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Applied and Environmental Microbiology
Volumn 81, Issue 19, 2015, Pages 6589-6600
Most of the dominant members of amphibian skin bacterial communities can be readily cultured
Author keywords

[No Author keywords available]
Indexed keywords

RNA;
EID: 84940775219     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01486-15     Document Type: Article
Times cited : (38)
References (98)
  • 1
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace NR. 1997. A molecular view of microbial diversity and the biosphere. Science 276:734-740. http://dx.doi.org/10.1126/science.276.5313.734.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH, Amann RI, Ludwig W. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3    Amann, R.I.4    Ludwig, W.5
  • 3
    • 38649142473 scopus 로고    scopus 로고
    • The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
    • Van der Heijden MGA, Bardgett RD, van Straalen NM. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11:296-310. http://dx.doi.org/10.1111/j.1461-0248.2007.01139.x.
    • (2008) Ecol Lett , vol.11 , pp. 296-310
    • Van der Heijden, M.G.A.1    Bardgett, R.D.2    van Straalen, N.M.3
  • 4
    • 1542378228 scopus 로고    scopus 로고
    • Microbial diversity: facts, problems and prospects
    • Schleifer K-H. 2004. Microbial diversity: facts, problems and prospects. Syst Appl Microbiol 27:3-9. http://dx.doi.org/10.1078/0723-2020-00245.
    • (2004) Syst Appl Microbiol , vol.27 , pp. 3-9
    • Schleifer, K.-H.1
  • 5
    • 84903977458 scopus 로고    scopus 로고
    • Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa
    • Ma L, Kim J, Hatzenpichler R, Karymov MA, Hubert N, Hanan IM, Chang EB, Ismagilov RF. 2014. Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa. Proc Natl Acad Sci U S A 111:9768-9773. http://dx.doi.org/10.1073/pnas.1404753111.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 9768-9773
    • Ma, L.1    Kim, J.2    Hatzenpichler, R.3    Karymov, M.A.4    Hubert, N.5    Hanan, I.M.6    Chang, E.B.7    Ismagilov, R.F.8
  • 6
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic nature of microbial species
    • Achtman M, Wagner M. 2008. Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol 6:431-440. http://dx.doi.org/10.1038/nrmicro1872.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 7
    • 84859625932 scopus 로고    scopus 로고
    • Next-generation sequencing technologies for environmental DNA research
    • Shokralla S, Spall JL, Gibson JF, Hajibabaei M. 2012. Next-generation sequencing technologies for environmental DNA research. Mol Ecol 21: 1794-1805. http://dx.doi.org/10.1111/j.1365-294X.2012.05538.x.
    • (2012) Mol Ecol , vol.21 , pp. 1794-1805
    • Shokralla, S.1    Spall, J.L.2    Gibson, J.F.3    Hajibabaei, M.4
  • 8
    • 0031662188 scopus 로고    scopus 로고
    • Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR. 1998. Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180:4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 9
    • 0035163571 scopus 로고    scopus 로고
    • Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives
    • Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. 2001. Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Appl Environ Microbiol 67:411-419. http://dx.doi.org/10.1128/AEM.67.1.411-419.2001.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 411-419
    • Hugenholtz, P.1    Tyson, G.W.2    Webb, R.I.3    Wagner, A.M.4    Blackall, L.L.5
  • 11
    • 84940740541 scopus 로고    scopus 로고
    • Single cell whole genome amplification of uncultivated microorganisms
    • Epstein SS (ed), Springer Science & Business Media, New York, NY.
    • Podar M, Keller M, Hugenholtz P. 2009. Single cell whole genome amplification of uncultivated microorganisms, p 241-256. In Epstein SS (ed), Uncultivated microorganisms. Springer Science & Business Media, New York, NY. http://dx.doi.org/10.1007/978-3-540-85465-4_10.
    • (2009) Uncultivated microorganisms , pp. 241-256
    • Podar, M.1    Keller, M.2    Hugenholtz, P.3
  • 12
    • 84920494626 scopus 로고    scopus 로고
    • Genomic characteristics of an environmental microbial community harboring a novel human uncultured TM7 bacterium associated with oral diseases
    • Abrams M, Barton D, Vandaei E, Romero D, Caldwell A, Ouverney C. 2012. Genomic characteristics of an environmental microbial community harboring a novel human uncultured TM7 bacterium associated with oral diseases. Open Access Sci Rep 1:276.
    • (2012) Open Access Sci Rep , vol.1 , pp. 276
    • Abrams, M.1    Barton, D.2    Vandaei, E.3    Romero, D.4    Caldwell, A.5    Ouverney, C.6
  • 13
    • 0027293144 scopus 로고
    • Detection of viable, but non-culturable Pseudomonas fluorescens DF57 in soil using a microcolony epifluorescence technique
    • Binnerup SJ, Jensen DF, Thordal-Christensen H, Sørensen J. 1993. Detection of viable, but non-culturable Pseudomonas fluorescens DF57 in soil using a microcolony epifluorescence technique. FEMS Microbiol Ecol 12:97-105. http://dx.doi.org/10.1111/j.1574-6941.1993.tb00021.x.
    • (1993) FEMS Microbiol Ecol , vol.12 , pp. 97-105
    • Binnerup, S.J.1    Jensen, D.F.2    Thordal-Christensen, H.3    Sørensen, J.4
  • 14
    • 10044246054 scopus 로고    scopus 로고
    • Quantification of the Pseudomonas population in New Zealand soils by fluorogenic PCR assay and culturing techniques
    • Lloyd-Jones G, Laurie AD, Tizzard AC. 2005. Quantification of the Pseudomonas population in New Zealand soils by fluorogenic PCR assay and culturing techniques. J Microbiol Methods 60:217-224. http://dx.doi.org/10.1016/j.mimet.2004.09.011.
    • (2005) J Microbiol Methods , vol.60 , pp. 217-224
    • Lloyd-Jones, G.1    Laurie, A.D.2    Tizzard, A.C.3
  • 15
    • 33750919098 scopus 로고    scopus 로고
    • Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of fieldgrown Verticillium dahliae host plants
    • Costa R, Salles JF, Berg G, Smalla K. 2006. Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of fieldgrown Verticillium dahliae host plants. Environ Microbiol 8:2136-2149. http://dx.doi.org/10.1111/j.1462-2920.2006.01096.x.
    • (2006) Environ Microbiol , vol.8 , pp. 2136-2149
    • Costa, R.1    Salles, J.F.2    Berg, G.3    Smalla, K.4
  • 16
    • 80051688016 scopus 로고    scopus 로고
    • Natural history, microbes and sequences: shouldn't we look back again to organisms?
    • Lazcano A. 2011. Natural history, microbes and sequences: shouldn't we look back again to organisms? PLoS One 6:e21334. http://dx.doi.org/10.1371/journal.pone.0021334.
    • (2011) PLoS One , vol.6
    • Lazcano, A.1
  • 17
    • 64749085304 scopus 로고    scopus 로고
    • Advances in fermentative biohydrogen production: the way forward?
    • Hallenbeck PC, Ghosh D. 2009. Advances in fermentative biohydrogen production: the way forward? Trends Biotechnol 27:287-297. http://dx.doi.org/10.1016/j.tibtech.2009.02.004.
    • (2009) Trends Biotechnol , vol.27 , pp. 287-297
    • Hallenbeck, P.C.1    Ghosh, D.2
  • 19
    • 79952186054 scopus 로고    scopus 로고
    • Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes
    • Tyagi M, da Fonseca MMR, de Carvalho CCCR. 2011. Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation 22:231-241. http://dx.doi.org/10.1007/s10532-010-9394-4.
    • (2011) Biodegradation , vol.22 , pp. 231-241
    • Tyagi, M.1    da Fonseca, M.M.R.2    de Carvalho, C.C.C.R.3
  • 20
    • 0037341503 scopus 로고    scopus 로고
    • Bacillus anthracis
    • Spencer RC. 2003. Bacillus anthracis. J Clin Pathol 56:182-187. http://dx.doi.org/10.1136/jcp.56.3.182.
    • (2003) J Clin Pathol , vol.56 , pp. 182-187
    • Spencer, R.C.1
  • 22
    • 77952673220 scopus 로고    scopus 로고
    • Application of probiotics in food products-challenges and new approaches
    • Jankovic I, Sybesma W, Phothirath P, Ananta E, Mercenier A. 2010. Application of probiotics in food products-challenges and new approaches. Curr Opin Biotechnol 21:175-181. http://dx.doi.org/10.1016/j.copbio.2010.03.009.
    • (2010) Curr Opin Biotechnol , vol.21 , pp. 175-181
    • Jankovic, I.1    Sybesma, W.2    Phothirath, P.3    Ananta, E.4    Mercenier, A.5
  • 24
    • 0034444503 scopus 로고    scopus 로고
    • Probiotic bacteria as biological control agents in aquaculture
    • Verschuere L, Rombaut G, Sorgeloos P, Verstraete W. 2000. Probiotic bacteria as biological control agents in aquaculture. Microbiol Mol Biol Rev 64:655-671. http://dx.doi.org/10.1128/MMBR.64.4.655-671.2000.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 655-671
    • Verschuere, L.1    Rombaut, G.2    Sorgeloos, P.3    Verstraete, W.4
  • 25
    • 33644838444 scopus 로고    scopus 로고
    • Amphibian pathogen Batrachochytrium dendrobatidis is inhibited by the cutaneous bacteria of amphibian species
    • Harris RN, James TY, Lauer A, Simon MA, Patel A. 2006. Amphibian pathogen Batrachochytrium dendrobatidis is inhibited by the cutaneous bacteria of amphibian species. Ecohealth 3:53-56. http://dx.doi.org/10.1007/s10393-005-0009-1.
    • (2006) Ecohealth , vol.3 , pp. 53-56
    • Harris, R.N.1    James, T.Y.2    Lauer, A.3    Simon, M.A.4    Patel, A.5
  • 26
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243-1247. http://dx.doi.org/10.1038/nature08480.
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1    Yu, D.S.2    Yoon, S.H.3    Jeong, H.4    Oh, T.K.5    Schneider, D.6    Lenski, R.E.7    Kim, J.F.8
  • 27
    • 0038441327 scopus 로고    scopus 로고
    • Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
    • Elena SF, Lenski RE. 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat Rev Genet 4:457-469.
    • (2003) Nat Rev Genet , vol.4 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 31
    • 0345869634 scopus 로고    scopus 로고
    • Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods
    • Broderick NA, Raffa KF, Goodman RM, Handelsman J. 2004. Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods. Appl Environ Microbiol 70:293-300. http://dx.doi.org/10.1128/AEM.70.1.293-300.2004.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 293-300
    • Broderick, N.A.1    Raffa, K.F.2    Goodman, R.M.3    Handelsman, J.4
  • 32
    • 67650621368 scopus 로고    scopus 로고
    • Bacterial diversity analysis of larvae and adult midgut microflora using culturedependent and culture-independent methods in lab-reared and fieldcollected Anopheles stephensi-an Asian malarial vector
    • Rani A, Sharma A, Rajagopal R, Adak T, Bhatnagar RK. 2009. Bacterial diversity analysis of larvae and adult midgut microflora using culturedependent and culture-independent methods in lab-reared and fieldcollected Anopheles stephensi-an Asian malarial vector. BMC Microbiol 9:96. http://dx.doi.org/10.1186/1471-2180-9-96.
    • (2009) BMC Microbiol , vol.9 , pp. 96
    • Rani, A.1    Sharma, A.2    Rajagopal, R.3    Adak, T.4    Bhatnagar, R.K.5
  • 33
    • 27444437777 scopus 로고    scopus 로고
    • Fungi associated with hair roots of Rhododendron lochiae (Ericaceae) in an Australian tropical cloud forest revealed by culturing and culture-independent molecular methods
    • Bougoure DS, Cairney JWG. 2005. Fungi associated with hair roots of Rhododendron lochiae (Ericaceae) in an Australian tropical cloud forest revealed by culturing and culture-independent molecular methods. Environ Microbiol 7:1743-1754. http://dx.doi.org/10.1111/j.1462-2920.2005.00919.x.
    • (2005) Environ Microbiol , vol.7 , pp. 1743-1754
    • Bougoure, D.S.1    Cairney, J.W.G.2
  • 34
    • 32144436601 scopus 로고    scopus 로고
    • 16S rRNA gene-based identification of midgut bacteria from field-caught Anopheles gambiae sensu lato and A. funestus mosquitoes reveals new species related to known insect symbionts
    • Lindh JM, Terenius O, Faye I. 2005. 16S rRNA gene-based identification of midgut bacteria from field-caught Anopheles gambiae sensu lato and A. funestus mosquitoes reveals new species related to known insect symbionts. Appl Environ Microbiol 71:7217-7223. http://dx.doi.org/10.1128/AEM.71.11.7217-7223.2005.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7217-7223
    • Lindh, J.M.1    Terenius, O.2    Faye, I.3
  • 35
    • 0036024611 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
    • Hayashi H, Sakamoto M, Benno Y. 2002. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 46:535-548. http://dx.doi.org/10.1111/j.1348-0421.2002.tb02731.x.
    • (2002) Microbiol Immunol , vol.46 , pp. 535-548
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 36
    • 0035158608 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile
    • Webster NS, Wilson KJ, Blackall LL, Hill RT. 2001. Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile. Appl Environ Microbiol 67:434-444. http://dx.doi.org/10.1128/AEM.67.1.434-444.2001.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 434-444
    • Webster, N.S.1    Wilson, K.J.2    Blackall, L.L.3    Hill, R.T.4
  • 38
    • 70350475894 scopus 로고    scopus 로고
    • The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus
    • Becker MH, Brucker RM, Schwantes CR, Harris RN, Minbiole KPC. 2009. The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus. Appl Environ Microbiol 75:6635-6638. http://dx.doi.org/10.1128/AEM.01294-09.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6635-6638
    • Becker, M.H.1    Brucker, R.M.2    Schwantes, C.R.3    Harris, R.N.4    Minbiole, K.P.C.5
  • 39
    • 77956197505 scopus 로고    scopus 로고
    • Cutaneous bacteria of the redback salamander prevent morbidity associated with a lethal disease
    • Becker MH, Harris RN. 2010. Cutaneous bacteria of the redback salamander prevent morbidity associated with a lethal disease. PLoS One 5:e10957. http://dx.doi.org/10.1371/journal.pone.0010957.
    • (2010) PLoS One , vol.5
    • Becker, M.H.1    Harris, R.N.2
  • 40
    • 84870956150 scopus 로고    scopus 로고
    • Synergistic inhibition of the lethal fungal pathogen Batrachochytrium dendrobatidis: the combined effect of symbiotic bacterial metabolites and antimicrobial peptides of the frog Rana muscosa
    • Myers JM, Ramsey JP, Blackman AL, Nichols AE, Minbiole KPC, Harris RN. 2012. Synergistic inhibition of the lethal fungal pathogen Batrachochytrium dendrobatidis: the combined effect of symbiotic bacterial metabolites and antimicrobial peptides of the frog Rana muscosa. J Chem Ecol 38:958-965. http://dx.doi.org/10.1007/s10886-012-0170-2.
    • (2012) J Chem Ecol , vol.38 , pp. 958-965
    • Myers, J.M.1    Ramsey, J.P.2    Blackman, A.L.3    Nichols, A.E.4    Minbiole, K.P.C.5    Harris, R.N.6
  • 41
    • 84874688341 scopus 로고    scopus 로고
    • Surviving chytridiomycosis: differential anti-Batrachochytrium dendrobatidis activity in bacterial isolates from three lowland species of Atelopus
    • Flechas SV, Sarmiento C, Cárdenas ME, Medina EM, Restrepo S, Amézquita A. 2012. Surviving chytridiomycosis: differential anti-Batrachochytrium dendrobatidis activity in bacterial isolates from three lowland species of Atelopus. PLoS One 7:e44832. http://dx.doi.org/10.1371/journal.pone.0044832.
    • (2012) PLoS One , vol.7
    • Flechas, S.V.1    Sarmiento, C.2    Cárdenas, M.E.3    Medina, E.M.4    Restrepo, S.5    Amézquita, A.6
  • 43
    • 84857117741 scopus 로고    scopus 로고
    • Co-habiting amphibian species harbor unique skin bacterial communities in wild populations
    • McKenzie VJ, Bowers RM, Fierer N, Knight R, Lauber CL. 2012. Co-habiting amphibian species harbor unique skin bacterial communities in wild populations. ISME J 6:588-596. http://dx.doi.org/10.1038/ismej.2011.129.
    • (2012) ISME J , vol.6 , pp. 588-596
    • McKenzie, V.J.1    Bowers, R.M.2    Fierer, N.3    Knight, R.4    Lauber, C.L.5
  • 45
    • 34548862039 scopus 로고    scopus 로고
    • Common cutaneous bacteria from the eastern red-backed salamander can inhibit pathogenic fungi
    • Lauer A, Simon MA, Banning JL, André E, Duncan K, Harris RN. 2007. Common cutaneous bacteria from the eastern red-backed salamander can inhibit pathogenic fungi. Copeia 2007:630-640. http://dx.doi.org/10.1643/0045-8511(2007)2007[630:CCBFTE]2.0.CO;2.
    • (2007) Copeia , vol.2007 , pp. 630-640
    • Lauer, A.1    Simon, M.A.2    Banning, J.L.3    André, E.4    Duncan, K.5    Harris, R.N.6
  • 48
    • 84875098273 scopus 로고    scopus 로고
    • Comparison of sequencing utility programs
    • Aronesty E. 2013. Comparison of sequencing utility programs. Open Bioinform J 7:1-8. http://dx.doi.org/10.2174/1875036201307010001.
    • (2013) Open Bioinform J , vol.7 , pp. 1-8
    • Aronesty, E.1
  • 51
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461. http://dx.doi.org/10.1093/bioinformatics/btq461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 53
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261-5267. http://dx.doi.org/10.1128/AEM.00062-07.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 54
    • 69249109724 scopus 로고    scopus 로고
    • Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
    • Claesson MJ, O'Sullivan O, Wang Q, Nikkilä J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW. 2009. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One 4:e6669. http://dx.doi.org/10.1371/journal.pone.0006669.
    • (2009) PLoS One , vol.4
    • Claesson, M.J.1    O'Sullivan, O.2    Wang, Q.3    Nikkilä, J.4    Marchesi, J.R.5    Smidt, H.6    de Vos, W.M.7    Ross, R.P.8    O'Toole, P.W.9
  • 56
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP. 2010. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5:e9490. http://dx.doi.org/10.1371/journal.pone.0009490.
    • (2010) PLoS One , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 57
    • 0021971186 scopus 로고
    • A new medium for the enumeration and subculture of bacteria from potable water
    • Reasoner DJ, Geldreich EE. 1985. A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49:1-7.
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1-7
    • Reasoner, D.J.1    Geldreich, E.E.2
  • 58
    • 84897445439 scopus 로고    scopus 로고
    • Ex situ diet influences the bacterial community associated with the skin of red-eyed tree frogs (Agalychnis callidryas)
    • Antwis RE, Haworth RL, Engelmoer DJP, Ogilvy V, Fidgett AL, Preziosi RF. 2014. Ex situ diet influences the bacterial community associated with the skin of red-eyed tree frogs (Agalychnis callidryas). PLoS One 9:e85563. http://dx.doi.org/10.1371/journal.pone.0085563.
    • (2014) PLoS One , vol.9
    • Antwis, R.E.1    Haworth, R.L.2    Engelmoer, D.J.P.3    Ogilvy, V.4    Fidgett, A.L.5    Preziosi, R.F.6
  • 59
    • 79960147009 scopus 로고    scopus 로고
    • Social immunity in amphibians: evidence for vertical transmission of innate defenses
    • Walke JB, Harris RN, Reinert LK, Rollins-Smith LA, Woodhams DC. 2011. Social immunity in amphibians: evidence for vertical transmission of innate defenses. Biotropica 43:396-400. http://dx.doi.org/10.1111/j.1744-7429.2011.00787.x.
    • (2011) Biotropica , vol.43 , pp. 396-400
    • Walke, J.B.1    Harris, R.N.2    Reinert, L.K.3    Rollins-Smith, L.A.4    Woodhams, D.C.5
  • 60
    • 38949203139 scopus 로고    scopus 로고
    • Diversity of cutaneous bacteria with antifungal activity isolated from female fourtoed salamanders
    • Lauer A, Simon MA, Banning JL, Lam BA, Harris RN. 2008. Diversity of cutaneous bacteria with antifungal activity isolated from female fourtoed salamanders. ISME J 2:145-157. http://dx.doi.org/10.1038/ismej.2007.110.
    • (2008) ISME J , vol.2 , pp. 145-157
    • Lauer, A.1    Simon, M.A.2    Banning, J.L.3    Lam, B.A.4    Harris, R.N.5
  • 63
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith DP. 1992. Conservation evaluation and phylogenetic diversity. Biol Conserv 61:1-10. http://dx.doi.org/10.1016/0006-3207(92)91201-3.
    • (1992) Biol Conserv , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 66
    • 78751575501 scopus 로고    scopus 로고
    • UniFrac: an effective distance metric for microbial community comparison
    • Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. 2011. UniFrac: an effective distance metric for microbial community comparison. ISME J 5:169-172. http://dx.doi.org/10.1038/ismej.2010.133.
    • (2011) ISME J , vol.5 , pp. 169-172
    • Lozupone, C.1    Lladser, M.E.2    Knights, D.3    Stombaugh, J.4    Knight, R.5
  • 67
    • 0041654220 scopus 로고
    • Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis
    • Kruskal JB. 1964. Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29:1-27. http://dx.doi.org/10.1007/BF02289565.
    • (1964) Psychometrika , vol.29 , pp. 1-27
    • Kruskal, J.B.1
  • 68
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
    • Letunic I, Bork P. 2011. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39:W475-W478. http://dx.doi.org/10.1093/nar/gkr201.
    • (2011) Nucleic Acids Res , vol.39 , pp. W475-W478
    • Letunic, I.1    Bork, P.2
  • 69
    • 0036181778 scopus 로고    scopus 로고
    • Exploring prokaryotic diversity in the genomic era
    • Hugenholtz P. 2002. Exploring prokaryotic diversity in the genomic era. Genome Biol 3:REVIEWS0003.
    • (2002) Genome Biol , vol.3
    • Hugenholtz, P.1
  • 70
    • 84931560785 scopus 로고    scopus 로고
    • Abundance of common species, not species richness, drives delivery of a real-world ecosystem service
    • Winfree R, Fox JW, Williams NM, Reilly JR, Cariveau DP. 2015. Abundance of common species, not species richness, drives delivery of a real-world ecosystem service. Ecol Lett 18:626-635. http://dx.doi.org/10.1111/ele.12424.
    • (2015) Ecol Lett , vol.18 , pp. 626-635
    • Winfree, R.1    Fox, J.W.2    Williams, N.M.3    Reilly, J.R.4    Cariveau, D.P.5
  • 71
    • 4043115676 scopus 로고    scopus 로고
    • Dominance not richness determines invasibility of tallgrass prairie
    • Smith MD, Wilcox JC, Kelly T, Knapp AK. 2004. Dominance not richness determines invasibility of tallgrass prairie. Oikos 106:253-262. http://dx.doi.org/10.1111/j.0030-1299.2004.13057.x.
    • (2004) Oikos , vol.106 , pp. 253-262
    • Smith, M.D.1    Wilcox, J.C.2    Kelly, T.3    Knapp, A.K.4
  • 72
    • 0038388872 scopus 로고    scopus 로고
    • Dominant species maintain ecosystem function with non-random species loss
    • Smith MD, Knapp AK. 2003. Dominant species maintain ecosystem function with non-random species loss. Ecol Lett 6:509-517. http://dx.doi.org/10.1046/j.1461-0248.2003.00454.x.
    • (2003) Ecol Lett , vol.6 , pp. 509-517
    • Smith, M.D.1    Knapp, A.K.2
  • 73
    • 73949111750 scopus 로고    scopus 로고
    • Bacterial competition: surviving and thriving in the microbial jungle
    • Hibbing ME, Fuqua C, Parsek MR, Peterson SB. 2010. Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Microbiol 8:15-25. http://dx.doi.org/10.1038/nrmicro2259.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 15-25
    • Hibbing, M.E.1    Fuqua, C.2    Parsek, M.R.3    Peterson, S.B.4
  • 74
    • 0037313141 scopus 로고    scopus 로고
    • High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters
    • Zubkov MV, Fuchs BM, Tarran GA, Burkill PH, Amann R. 2003. High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters. Appl Environ Microbiol 69:1299-1304. http://dx.doi.org/10.1128/AEM.69.2.1299-1304.2003.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1299-1304
    • Zubkov, M.V.1    Fuchs, B.M.2    Tarran, G.A.3    Burkill, P.H.4    Amann, R.5
  • 75
    • 0036406590 scopus 로고    scopus 로고
    • Bacteriocins: evolution, ecology, and application
    • Riley MA, Wertz JE. 2002. Bacteriocins: evolution, ecology, and application. Annu Rev Microbiol 56:117-137. http://dx.doi.org/10.1146/annurev.micro.56.012302.161024.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 117-137
    • Riley, M.A.1    Wertz, J.E.2
  • 76
    • 55549085179 scopus 로고    scopus 로고
    • Amphibian chemical defense: antifungal metabolites of the microsymbiont Janthinobacterium lividum on the salamander Plethodon cinereus
    • Brucker RM, Harris RN, Schwantes CR, Gallaher TN, Flaherty DC, Lam BA, Minbiole KPC. 2008. Amphibian chemical defense: antifungal metabolites of the microsymbiont Janthinobacterium lividum on the salamander Plethodon cinereus. J Chem Ecol 34:1422-1429. http://dx.doi.org/10.1007/s10886-008-9555-7.
    • (2008) J Chem Ecol , vol.34 , pp. 1422-1429
    • Brucker, R.M.1    Harris, R.N.2    Schwantes, C.R.3    Gallaher, T.N.4    Flaherty, D.C.5    Lam, B.A.6    Minbiole, K.P.C.7
  • 77
    • 44449139647 scopus 로고    scopus 로고
    • The identification of 2,4-diacetylphloroglucinol as an antifungal metabolite produced by cutaneous bacteria of the salamander Plethodon cinereus
    • Brucker RM, Baylor CM, Walters RL, Lauer A, Harris RN, Minbiole KPC. 2008. The identification of 2,4-diacetylphloroglucinol as an antifungal metabolite produced by cutaneous bacteria of the salamander Plethodon cinereus. J Chem Ecol 34:39-43. http://dx.doi.org/10.1007/s10886-007-9352-8.
    • (2008) J Chem Ecol , vol.34 , pp. 39-43
    • Brucker, R.M.1    Baylor, C.M.2    Walters, R.L.3    Lauer, A.4    Harris, R.N.5    Minbiole, K.P.C.6
  • 78
    • 43049116790 scopus 로고    scopus 로고
    • Antifungal skin bacteria, embryonic survival, and communal nesting in four-toed salamanders, Hemidactylium scutatum
    • Banning JL, Weddle AL, Wahl GW, Simon MA, Lauer A, Walters RL, Harris RN. 2008. Antifungal skin bacteria, embryonic survival, and communal nesting in four-toed salamanders, Hemidactylium scutatum. Oecologia 156:423-429. http://dx.doi.org/10.1007/s00442-008-1002-5.
    • (2008) Oecologia , vol.156 , pp. 423-429
    • Banning, J.L.1    Weddle, A.L.2    Wahl, G.W.3    Simon, M.A.4    Lauer, A.5    Walters, R.L.6    Harris, R.N.7
  • 79
    • 84856241246 scopus 로고    scopus 로고
    • Motile zoospores of Batrachochytrium dendrobatidis move away from antifungal metabolites produced by amphibian skin bacteria
    • Lam BA, Walton DB, Harris RN. 2011. Motile zoospores of Batrachochytrium dendrobatidis move away from antifungal metabolites produced by amphibian skin bacteria. Ecohealth 8:36-45. http://dx.doi.org/10.1007/s10393-011-0689-7.
    • (2011) Ecohealth , vol.8 , pp. 36-45
    • Lam, B.A.1    Walton, D.B.2    Harris, R.N.3
  • 80
    • 34547686154 scopus 로고    scopus 로고
    • Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses
    • Costa R, Gomes NCM, Krögerrecklenfort E, Opelt K, Berg G, Smalla K. 2007. Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses. Environ Microbiol 9:2260-2273. http://dx.doi.org/10.1111/j.1462-2920.2007.01340.x.
    • (2007) Environ Microbiol , vol.9 , pp. 2260-2273
    • Costa, R.1    Gomes, N.C.M.2    Krögerrecklenfort, E.3    Opelt, K.4    Berg, G.5    Smalla, K.6
  • 81
    • 84896322290 scopus 로고    scopus 로고
    • The amphibian skin-associated microbiome across species, space and life history stages
    • Kueneman JG, Parfrey LW, Woodhams DC, Archer HM, Knight R, McKenzie VJ. 2014. The amphibian skin-associated microbiome across species, space and life history stages. Mol Ecol 23:1238-1250. http://dx.doi.org/10.1111/mec.12510.
    • (2014) Mol Ecol , vol.23 , pp. 1238-1250
    • Kueneman, J.G.1    Parfrey, L.W.2    Woodhams, D.C.3    Archer, H.M.4    Knight, R.5    McKenzie, V.J.6
  • 84
    • 84930031515 scopus 로고    scopus 로고
    • Amphibian symbiotic bacteria do not show a universal ability to inhibit growth of the global panzootic lineage of Batrachochytrium dendrobatidis
    • Antwis RE, Preziosi RF, Harrison XA, Garner TWJ. 2015. Amphibian symbiotic bacteria do not show a universal ability to inhibit growth of the global panzootic lineage of Batrachochytrium dendrobatidis. Appl Environ Microbiol 81:3706-3711. http://dx.doi.org/10.1128/AEM.00010-15.
    • (2015) Appl Environ Microbiol , vol.81 , pp. 3706-3711
    • Antwis, R.E.1    Preziosi, R.F.2    Harrison, X.A.3    Garner, T.W.J.4
  • 85
    • 0032724937 scopus 로고    scopus 로고
    • Dilution/extinction of community phenotypic characters to estimate relative structural diversity in mixed com-munities
    • Garland JL, Lehman RM. 1999. Dilution/extinction of community phenotypic characters to estimate relative structural diversity in mixed com-munities. FEMS Microbiol Ecol 30:333-343. http://dx.doi.org/10.1111/j.1574-6941.1999.tb00661.x.
    • (1999) FEMS Microbiol Ecol , vol.30 , pp. 333-343
    • Garland, J.L.1    Lehman, R.M.2
  • 86
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon SA, Giovannoni SJ. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl Environ Microbiol 68:3878-3885. http://dx.doi.org/10.1128/AEM.68.8.3878-3885.2002.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 87
    • 77954353448 scopus 로고    scopus 로고
    • Strategies for culture of "unculturable" bacteria
    • Vartoukian SR, Palmer RM, Wade WG. 2010. Strategies for culture of "unculturable" bacteria. FEMS Microbiol Lett 309:1-7. http://dx.doi.org/10.1111/j.1574-6968.2010.02000.x.
    • (2010) FEMS Microbiol Lett , vol.309 , pp. 1-7
    • Vartoukian, S.R.1    Palmer, R.M.2    Wade, W.G.3
  • 89
    • 78651511845 scopus 로고    scopus 로고
    • Microbial seed banks: the ecological and evolutionary implications of dormancy
    • Lennon JT, Jones SE. 2011. Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat Rev Microbiol 9:119-130. http://dx.doi.org/10.1038/nrmicro2504.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 119-130
    • Lennon, J.T.1    Jones, S.E.2
  • 90
    • 77953206132 scopus 로고    scopus 로고
    • Recent findings on the viable but nonculturable state in pathogenic bacteria
    • Oliver JD. 2010. Recent findings on the viable but nonculturable state in pathogenic bacteria. FEMS Microbiol Rev 34:415-425. http://dx.doi.org/10.1111/j.1574-6976.2009.00200.x.
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 415-425
    • Oliver, J.D.1
  • 91
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M. 2002. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 68:2391-2396. http://dx.doi.org/10.1128/AEM.68.5.2391-2396.2002.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 92
    • 2142663611 scopus 로고
    • Nature of the factor in soil-extract responsible for bacterial growth-stimulation
    • Taylor CB. 1951. Nature of the factor in soil-extract responsible for bacterial growth-stimulation. Nature 168:115-116. http://dx.doi.org/10.1038/168115a0.
    • (1951) Nature , vol.168 , pp. 115-116
    • Taylor, C.B.1
  • 93
    • 0037052320 scopus 로고    scopus 로고
    • Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment
    • Kaeberlein T, Lewis K, Epstein SS. 2002. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science 296:1127-1129. http://dx.doi.org/10.1126/science.1070633.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 94
    • 35448948699 scopus 로고    scopus 로고
    • Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates
    • Bollmann A, Lewis K, Epstein SS. 2007. Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl Environ Microbiol 73:6386-6390. http://dx.doi.org/10.1128/AEM.01309-07.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6386-6390
    • Bollmann, A.1    Lewis, K.2    Epstein, S.S.3
  • 96
    • 77950526876 scopus 로고    scopus 로고
    • Dormancy contributes to the maintenance of microbial diversity
    • Jones SE, Lennon JT. 2010. Dormancy contributes to the maintenance of microbial diversity. Proc Natl Acad SciUSA107:5881-5886. http://dx.doi.org/10.1073/pnas.0912765107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 5881-5886
    • Jones, S.E.1    Lennon, J.T.2
  • 98
    • 0037979242 scopus 로고    scopus 로고
    • Cultivationdependent and-independent approaches for determining bacterial diversity in heavy-metal-contaminated soil
    • Ellis RJ, Morgan P, Weightman AJ, Fry JC. 2003. Cultivationdependent and-independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl Environ Microbiol 69:3223-3230. http://dx.doi.org/10.1128/AEM.69.6.3223-3230.2003.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3223-3230
    • Ellis, R.J.1    Morgan, P.2    Weightman, A.J.3    Fry, J.C.4

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