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Volumn 23, Issue 6, 2014, Pages 1238-1250

The amphibian skin-associated microbiome across species, space and life history stages

Author keywords

amphibians; bacteria; California; metamorphosis; microbiome; skin

Indexed keywords

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; AMPHIBIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BOREAS; FIRMICUTES; GAMMAPROTEOBACTERIA; LITHOBATES; PSEUDACRIS; PSEUDACRIS REGILLA; RANA CASCADAE; RANA CATESBEIANA; SPHINGOBACTERIA; TARICHA TOROSA;

EID: 84896322290     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12510     Document Type: Article
Times cited : (279)

References (52)
  • 1
    • 33644844767 scopus 로고    scopus 로고
    • Cutaneous microbial flora and antibiosis in Plethodon ventralis
    • (eds Bruce R.C. Jaeger R.G. Houck L.D.), Kluwer Academic Plenum Publishers, New York.
    • Austin Jr RM, (2000) Cutaneous microbial flora and antibiosis in Plethodon ventralis. In: The biology of plethodontid salamanders (eds, Bruce RC, Jaeger RG, Houck LD,), pp. 127-136. Kluwer Academic Plenum Publishers, New York.
    • (2000) The Biology of Plethodontid Salamanders , pp. 127-136
    • Austin, Jr.R.M.1
  • 3
    • 79955456912 scopus 로고    scopus 로고
    • Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood
    • Berger SA, Krompass D, Stamatakis A, (2011) Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood. Systematic biology, 60, 291-302.
    • (2011) Systematic Biology , vol.60 , pp. 291-302
    • Berger, S.A.1    Krompass, D.2    Stamatakis, A.3
  • 4
    • 84877919659 scopus 로고    scopus 로고
    • Mitigating amphibian chytridiomycosis with bioaugmentation: Characteristics of effective probiotics and strategies for their selection and use
    • Bletz MC, Loudon AH, Becker MH, et al,. (2013) Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use. Ecology Letters, 16, 807-820.
    • (2013) Ecology Letters , vol.16 , pp. 807-820
    • Bletz, M.C.1    Loudon, A.H.2    Becker, M.H.3
  • 5
    • 84871979584 scopus 로고    scopus 로고
    • Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
    • Bokulich NA, Subramanian S, Faith JJ, et al,. (2013) Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature methods, 10, 57-59.
    • (2013) Nature Methods , vol.10 , pp. 57-59
    • Bokulich, N.A.1    Subramanian, S.2    Faith, J.J.3
  • 6
    • 0035147539 scopus 로고    scopus 로고
    • Evidence of a chytrid fungus infection involved in the decline of the common midwife toad Alytes obstetricans in protected areas of central Spain
    • Bosch J, Martínez-Solano I, García-París M, (2001) Evidence of a chytrid fungus infection involved in the decline of the common midwife toad Alytes obstetricans in protected areas of central Spain. Biological conservation, 97, 331-337.
    • (2001) Biological Conservation , vol.97 , pp. 331-337
    • Bosch, J.1    Martínez-Solano, I.2    García-París, M.3
  • 7
    • 80052965474 scopus 로고    scopus 로고
    • Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve
    • Bravo JA, Forsythe P, Chew MV, et al,. (2011) Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve. Proceedings of the National Academy of Sciences, 108, 16050-16055.
    • (2011) Proceedings of the National Academy of Sciences , vol.108 , pp. 16050-16055
    • Bravo, J.A.1    Forsythe, P.2    Chew, M.V.3
  • 9
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al,. (2010) QIIME allows analysis of high-throughput community sequencing data. Nature methods, 7, 335-336.
    • (2010) Nature Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 11
    • 84862637797 scopus 로고    scopus 로고
    • Gut immune maturation depends on colonization with a host-specific microbiota
    • Chung H, Pamp SJ, Hill JA, et al,. (2012) Gut immune maturation depends on colonization with a host-specific microbiota. Cell, 149, 1578-1593.
    • (2012) Cell , vol.149 , pp. 1578-1593
    • Chung, H.1    Pamp, S.J.2    Hill, J.A.3
  • 12
    • 79151481443 scopus 로고    scopus 로고
    • The contribution of skin antimicrobial peptides to the system of innate immunity in anurans
    • Conlon JM, (2011) The contribution of skin antimicrobial peptides to the system of innate immunity in anurans. Cell and tissue research, 343, 201-212.
    • (2011) Cell and Tissue Research , vol.343 , pp. 201-212
    • Conlon, J.M.1
  • 13
  • 14
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL, Hamady M, et al,. (2009) Bacterial community variation in human body habitats across space and time. Science, 326, 1694-1697.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3
  • 15
    • 34247587615 scopus 로고    scopus 로고
    • Identification of the natural bacterial microflora on the skin of eastern newts, bullfrog tadpoles and redback salamanders
    • Culp CE, Falkinham JO III, Belden LK, (2007) Identification of the natural bacterial microflora on the skin of eastern newts, bullfrog tadpoles and redback salamanders. Herpetologica, 63, 66-71.
    • (2007) Herpetologica , vol.63 , pp. 66-71
    • Culp, C.E.1    Falkinham III, J.O.2    Belden, L.K.3
  • 16
    • 0036566174 scopus 로고    scopus 로고
    • Species specificity of O-linked carbohydrate chains of the oviducal mucins in amphibians: Structural analysis of neutral oligosaccharide alditols released by reductive beta-elimination from the egg-jelly coats of Rana clamitans
    • Delplace F, Maes E, Lemoine J, Strecker G, (2002) Species specificity of O-linked carbohydrate chains of the oviducal mucins in amphibians: structural analysis of neutral oligosaccharide alditols released by reductive beta-elimination from the egg-jelly coats of Rana clamitans. The Biochemical Journal, 363, 457-471.
    • (2002) The Biochemical Journal , vol.363 , pp. 457-471
    • Delplace, F.1    Maes, E.2    Lemoine, J.3    Strecker, G.4
  • 17
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, et al,. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and environmental microbiology, 72, 5069-5072.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5069-5072
    • Desantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 19
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC, (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 20
    • 0029016511 scopus 로고
    • Histology and lectin-binding patterns in the skin of the terrestrial horned frog Ceratophrys ornata
    • Faszewski EE, Kaltenbach JC, (1995) Histology and lectin-binding patterns in the skin of the terrestrial horned frog Ceratophrys ornata. Cell and tissue research, 281, 169-177.
    • (1995) Cell and Tissue Research , vol.281 , pp. 169-177
    • Faszewski, E.E.1    Kaltenbach, J.C.2
  • 21
    • 50349089501 scopus 로고    scopus 로고
    • Metamorphic changes in localization of sugars in skin of the leopard frog, Rana pipiens
    • Faszewski EE, Tyrell A, Guin S, Kaltenbach JC, (2008) Metamorphic changes in localization of sugars in skin of the leopard frog, Rana pipiens. Journal of Morphology, 269, 998-1007.
    • (2008) Journal of Morphology , vol.269 , pp. 998-1007
    • Faszewski, E.E.1    Tyrell, A.2    Guin, S.3    Kaltenbach, J.C.4
  • 24
    • 0000396128 scopus 로고
    • A simplified table for staging anuran embryos and larvae with notes on identification
    • Gosner KL, (1960) A simplified table for staging anuran embryos and larvae with notes on identification. Herpetologica, 16, 183-190.
    • (1960) Herpetologica , vol.16 , pp. 183-190
    • Gosner, K.L.1
  • 26
    • 46449124442 scopus 로고    scopus 로고
    • A diversity profile of the human skin microbiota
    • Grice EA, Kong HH, Renaud G, et al,. (2008) A diversity profile of the human skin microbiota. Genome Research, 18, 1043-1050.
    • (2008) Genome Research , vol.18 , pp. 1043-1050
    • Grice, E.A.1    Kong, H.H.2    Renaud, G.3
  • 27
    • 67949120453 scopus 로고    scopus 로고
    • Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus
    • Harris RN, Brucker RM, Walke JB, et al,. (2009) Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus. The ISME journal, 3, 818-824.
    • (2009) The ISME Journal , vol.3 , pp. 818-824
    • Harris, R.N.1    Brucker, R.M.2    Walke, J.B.3
  • 28
    • 74049157816 scopus 로고    scopus 로고
    • The ecology and impact of chytridiomycosis: An emerging disease of amphibians
    • Kilpatrick AM, Briggs CJ, Daszak P, (2010) The ecology and impact of chytridiomycosis: an emerging disease of amphibians. Trends in Ecology & Evolution, 25, 109-118.
    • (2010) Trends in Ecology & Evolution , vol.25 , pp. 109-118
    • Kilpatrick, A.M.1    Briggs, C.J.2    Daszak, P.3
  • 29
    • 49249124904 scopus 로고    scopus 로고
    • The influence of soil properties on the structure of bacterial and fungal communities across land-use types
    • Lauber CL, Strickland MS, Bradford MA, Fierer N, (2008) The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biology and Biochemistry, 40, 2407-2415.
    • (2008) Soil Biology and Biochemistry , vol.40 , pp. 2407-2415
    • Lauber, C.L.1    Strickland, M.S.2    Bradford, M.A.3    Fierer, N.4
  • 30
    • 38949203139 scopus 로고    scopus 로고
    • Diversity of cutaneous bacteria with antifungal activity isolated from female four-toed salamanders
    • Lauer A, Simon MA, Banning JL, Lam BA, Harris RN, (2007) Diversity of cutaneous bacteria with antifungal activity isolated from female four-toed salamanders. The ISME journal, 2, 145-157.
    • (2007) The ISME Journal , vol.2 , pp. 145-157
    • Lauer, A.1    Simon, M.A.2    Banning, J.L.3    Lam, B.A.4    Harris, R.N.5
  • 31
    • 46249085739 scopus 로고    scopus 로고
    • Evolution of mammals and their gut microbes
    • Ley RE, Hamady M, Lozupone C, et al,. (2008) Evolution of mammals and their gut microbes. Science, 320, 1647-1651.
    • (2008) Science , vol.320 , pp. 1647-1651
    • Ley, R.E.1    Hamady, M.2    Lozupone, C.3
  • 32
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R, (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Applied and environmental microbiology, 71, 8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 34
    • 84857122937 scopus 로고    scopus 로고
    • An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
    • McDonald D, Price MN, Goodrich J, et al,. (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME journal, 6, 610-618.
    • (2012) The ISME Journal , vol.6 , pp. 610-618
    • McDonald, D.1    Price, M.N.2    Goodrich, J.3
  • 36
    • 84857117741 scopus 로고    scopus 로고
    • Co-habiting amphibian species harbor unique skin bacterial communities in wild populations
    • McKenzie VJ, Bowers RM, Fierer N, Knight R, Lauber CL, (2012) Co-habiting amphibian species harbor unique skin bacterial communities in wild populations. The ISME journal, 6, 588-596.
    • (2012) The ISME Journal , vol.6 , pp. 588-596
    • McKenzie, V.J.1    Bowers, R.M.2    Fierer, N.3    Knight, R.4    Lauber, C.L.5
  • 37
    • 79956301905 scopus 로고    scopus 로고
    • Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
    • Muegge BD, Kuczynski J, Knights D, et al,. (2011) Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science, 332, 970-974.
    • (2011) Science , vol.332 , pp. 970-974
    • Muegge, B.D.1    Kuczynski, J.2    Knights, D.3
  • 39
    • 83555163868 scopus 로고    scopus 로고
    • Factors related to the distribution and prevalence of the fungal pathogen Batrachochytrium dendrobatidis in Rana cascadae and other amphibians in the Klamath Mountains
    • Piovia-Scott J, Pope KL, Lawler SP, Cole EM, Foley JE, (2011) Factors related to the distribution and prevalence of the fungal pathogen Batrachochytrium dendrobatidis in Rana cascadae and other amphibians in the Klamath Mountains. Biological Conservation, 144, 2913-2921.
    • (2011) Biological Conservation , vol.144 , pp. 2913-2921
    • Piovia-Scott, J.1    Pope, K.L.2    Lawler, S.P.3    Cole, E.M.4    Foley, J.E.5
  • 40
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2 - Approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP, (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE, 5, e9490.
    • (2010) PLoS ONE , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 42
    • 0023122844 scopus 로고
    • Morphology of ventral epidermis of Rana catesbeiana during metamorphosis
    • Robinson DH, Heintzelman MB, (1987) Morphology of ventral epidermis of Rana catesbeiana during metamorphosis. The Anatomical Record, 217, 305-317.
    • (1987) The Anatomical Record , vol.217 , pp. 305-317
    • Robinson, D.H.1    Heintzelman, M.B.2
  • 43
    • 0032429004 scopus 로고    scopus 로고
    • Metamorphosis and the amphibian immune system
    • Rollins-Smith LA, (1998) Metamorphosis and the amphibian immune system. Immunological Reviews, 166, 221-230.
    • (1998) Immunological Reviews , vol.166 , pp. 221-230
    • Rollins-Smith, L.A.1
  • 46
    • 79956293726 scopus 로고    scopus 로고
    • Skin microbiota: Microbial community structure and its potential association with health and disease
    • Rosenthal M, Goldberg D, Aiello A, Larson E, Foxman B, (2011) Skin microbiota: microbial community structure and its potential association with health and disease. Infection, Genetics and Evolution, 11, 839-848.
    • (2011) Infection, Genetics and Evolution , vol.11 , pp. 839-848
    • Rosenthal, M.1    Goldberg, D.2    Aiello, A.3    Larson, E.4    Foxman, B.5
  • 47
    • 84875883112 scopus 로고    scopus 로고
    • Fundamentals of microbial community resistance and resilience
    • Shade A, Peter H, Allison SD, et al,. (2012) Fundamentals of microbial community resistance and resilience. Frontiers in Microbiology, 3, 417.
    • (2012) Frontiers in Microbiology , vol.3 , pp. 417
    • Shade, A.1    Peter, H.2    Allison, S.D.3
  • 48
    • 80051750115 scopus 로고    scopus 로고
    • Symbiotic bacteria are responsible for diet-induced mating preference in Drosophila melanogaster, providing support for the hologenome concept of evolution
    • Sharon G, Segal D, Zilber-Rosenberg I, Rosenberg E, (2011) Symbiotic bacteria are responsible for diet-induced mating preference in Drosophila melanogaster, providing support for the hologenome concept of evolution. Gut Microbes, 2, 190-192.
    • (2011) Gut Microbes , vol.2 , pp. 190-192
    • Sharon, G.1    Segal, D.2    Zilber-Rosenberg, I.3    Rosenberg, E.4
  • 49
    • 0027318961 scopus 로고
    • Biological roles of oligosaccharides: All of the theories are correct
    • Varki A, (1993) Biological roles of oligosaccharides: all of the theories are correct. Glycobiology, 3, 97-130.
    • (1993) Glycobiology , vol.3 , pp. 97-130
    • Varki, A.1
  • 50
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and environmental microbiology, 73, 5261-5267.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 51
    • 34547509968 scopus 로고    scopus 로고
    • Symbiotic bacteria contribute to innate immune defenses of the threatened mountain yellow-legged frog, Rana muscosa
    • Woodhams D, Vredenburg V, Simon M, et al,. (2007) Symbiotic bacteria contribute to innate immune defenses of the threatened mountain yellow-legged frog, Rana muscosa. Biological Conservation, 138, 390-398.
    • (2007) Biological Conservation , vol.138 , pp. 390-398
    • Woodhams, D.1    Vredenburg, V.2    Simon, M.3
  • 52
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko T, Rey FE, Manary MJ, et al,. (2012) Human gut microbiome viewed across age and geography. Nature, 486, 222-227.
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1    Rey, F.E.2    Manary, M.J.3


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