-
1
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
M. Arumugam, J. Raes, E. Pelletier, D. Le Paslier, T. Yamada, D. R. Mende, G. R. Fernandes, J. Tap, T. Bruls, J.-M. Batto, et al. Enterotypes of the human gut microbiome. Nature, 473:174{180, 2011.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.-M.10
-
2
-
-
84863403768
-
Conditional likelihood maximisation: A unifying framework for information theoretic feature selection
-
G. Brown, A. Pocock, M.-J. Zhao, and M. Lujfian. Conditional likelihood maximisation: A unifying framework for information theoretic feature selection. Journal of Machine Learning Research, 13:27{66, 2012.
-
(2012)
Journal of Machine Learning Research
, vol.13
, pp. 27-66
-
-
Brown, G.1
Pocock, A.2
Zhao, M.-J.3
Lujfian, M.4
-
3
-
-
77952243141
-
Qiime allows analysis of high-throughput community sequencing data
-
J. G. Caporaso, J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, N. Fierer, A. G. Peña, J. K. Goodrich, J. I. Gordon, G. A. Huttley, S. T. Kelley, D. Knights, J. E. Koenig, R. E. Ley, C. A. Lozupone, D. McDonald, B. D. Muegge, M. Pirrung, J. Reeder, J. R. Sevinsky, P. J. Turnbaugh, W. A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, and R. Knight. QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7:335{336, 2010.
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
4
-
-
79957574938
-
Moving pictures of the human microbiome
-
J. G. Caporaso, C. L. Lauber, E. K. Costello, D. Berg-Lyons, A. Gonzalez, J. Stombaugh, D. Knights, P. Gajer, J. Ravel, N. Fierer, J. I. Gordon, and R. Knight. Moving pictures of the human microbiome. Genome Biology, 12(5), 2011.
-
(2011)
Genome Biology
, vol.12
, Issue.5
-
-
Caporaso, J.G.1
Lauber, C.L.2
Costello, E.K.3
Berg-Lyons, D.4
Gonzalez, A.5
Stombaugh, J.6
Knights, D.7
Gajer, P.8
Ravel, J.9
Fierer, N.10
Gordon, J.I.11
Knight, R.12
-
6
-
-
84867606932
-
Forensic identification using environmental samples
-
G. Ditzler, R. Polikar, and G. Rosen. Forensic identification using environmental samples. In International Conference on Acoustics, Speech and Signal Processing, pages 1861{1864, 2012.
-
(2012)
International Conference on Acoustics, Speech and Signal Processing
, pp. 1861-1864
-
-
Ditzler, G.1
Polikar, R.2
Rosen, G.3
-
9
-
-
77950904616
-
Forensic identification using skin bacterial communities
-
N. Fierer, C. L. Lauber, N. Zhou, D. McDonald, E. K. Costello, and R. Knight. Forensic identification using skin bacterial communities. Proceedings of the National Academy of Sciences, 107(14):6477{6481, 2010.
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, Issue.14
, pp. 6477-6481
-
-
Fierer, N.1
Lauber, C.L.2
Zhou, N.3
McDonald, D.4
Costello, E.K.5
Knight, R.6
-
10
-
-
79959749487
-
Information-theoretic approaches to SVM feature selection for metagenome read classiffication
-
E. Garbarine, J. DePasquale, V. Gadia, R. Polikar, and G. Rosen. Information-theoretic approaches to SVM feature selection for metagenome read classiffication. Computational Biology and Chemistry, 35:199{209, 2011.
-
(2011)
Computational Biology and Chemistry
, vol.35
, pp. 199-209
-
-
Garbarine, E.1
DePasquale, J.2
Gadia, V.3
Polikar, R.4
Rosen, G.5
-
11
-
-
80052722544
-
Meeting report: The terabase metagenomics workshop and the vision of an earth microbiome project
-
J. Gilbert, F. Meyer, D. Antonopoulos, P. Balaji, C. T. Brown, C. Brown, N. Desai, J. A. Eisen, D. Evers, D. Field, W. Feng, D. Huson, J. Jansson, R. Knight, J. Knight, E. Kolker, K. Konstantindis, J. Kostka, N. Kyrpides, R. Mackelprang, A. McHardy, C. Quince, J. Raes, A. Sczyrba, A. Shade, and R. Stevens. Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project. Standards in Genomic Sciences, 3(3), 2010.
-
(2010)
Standards in Genomic Sciences
, vol.3
, Issue.3
-
-
Gilbert, J.1
Meyer, F.2
Antonopoulos, D.3
Balaji, P.4
Brown, C.T.5
Brown, C.6
Desai, N.7
Eisen, J.A.8
Evers, D.9
Field, D.10
Feng, W.11
Huson, D.12
Jansson, J.13
Knight, R.14
Knight, J.15
Kolker, E.16
Konstantindis, K.17
Kostka, J.18
Kyrpides, N.19
Mackelprang, R.20
Mchardy, A.21
Quince, C.22
Raes, J.23
Sczyrba, A.24
Shade, A.25
Stevens, R.26
more..
-
14
-
-
79251625980
-
Supervised classiffication of human microbiota
-
D. Knights, E. K. Costello, and R. Knight. Supervised classiffication of human microbiota. FEMS Microbiology Reviews, 35(2):343{359, 2011.
-
(2011)
FEMS Microbiology Reviews
, vol.35
, Issue.2
, pp. 343-359
-
-
Knights, D.1
Costello, E.K.2
Knight, R.3
-
15
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
J. E. Koenig, A. Spor, N. Scalfone, A. D. Fricker, J. Stombaugh, R. Knight, L. T. Angenent, and R. E. Ley. Succession of microbial consortia in the developing infant gut microbiome. Proceedings of the National Academy of Sciences, pages 4578{4585, 2010.
-
(2010)
Proceedings of the National Academy of Sciences
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
Angenent, L.T.7
Ley, R.E.8
-
18
-
-
82255194270
-
Sparse distance based learning for simultaneous multiclass classiffication and feature selection of metagenomic data
-
Z. Liu, W. Hsiao, B. Cantarel, E. F. Drfiabek, and C. Fraser-Liggett. Sparse distance based learning for simultaneous multiclass classiffication and feature selection of metagenomic data. Oxford Bioinformatics, 27(23), 2011.
-
(2011)
Oxford Bioinformatics
, vol.27
, Issue.23
-
-
Liu, Z.1
Hsiao, W.2
Cantarel, B.3
Drfiabek, E.F.4
Fraser-Liggett, C.5
-
19
-
-
53549118607
-
The metagenomics rast server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
F. Meyer, D. Paarmann, M. D'Souza, R. Olson, E. M. Glass, M. Kubal, T. Paczian, A. Rodriguez, R. Stevens, A. Wilke, J. Wilkening, and R. A. Edwards. The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9(386), 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
Paczian, T.7
Rodriguez, A.8
Stevens, R.9
Wilke, A.10
Wilkening, J.11
Edwards, R.A.12
-
20
-
-
85052723106
-
-
National Research Council. National Academies Press
-
National Research Council. Frontiers in Massive Data Analysis. National Academies Press, 2013.
-
(2013)
Frontiers in Massive Data Analysis
-
-
-
21
-
-
80555140075
-
Scikit-learn: Machine learning in python
-
F. Pedregosa, G. Varoquaux, A. Gramfort, V. Michel, B. Thirion, O. Grisel, M. Blondel, P. Prettenhofer, R. Weiss, V. Dubourg, J. Vanderplas, A. Passos, D. Cournapeau, M. Brucher, M. Perrot, and E. Duchesnay. Scikit-learn: Machine learning in Python. Journal of Machine Learning Research, 12(2825{2830), 2011.
-
(2011)
Journal of Machine Learning Research
, vol.12
, Issue.2825-2830
-
-
Pedregosa, F.1
Varoquaux, G.2
Gramfort, A.3
Michel, V.4
Thirion, B.5
Grisel, O.6
Blondel, M.7
Prettenhofer, P.8
Weiss, R.9
Dubourg, V.10
Vanderplas, J.11
Passos, A.12
Cournapeau, D.13
Brucher, M.14
Perrot, M.15
Duchesnay, E.16
-
22
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
J. Qin, R. Li, J. Raes, M. Arumugam, K. S. Burgdorf, C. Manichanh, T. Nielsen, N. Pons, F. Levenez, T. Yamada, D. R. Mende, J. Li, J. Xu, S. Li, D. Li, J. Cao, B. Wang, H. Liang, H. Zheng, Y. Xie, J. Tap, P. Lepage, M. Bertalan, J. M. Batto, T. Hansen, D. Le Paslier, A. Linneberg, H. B. Nielsen, E. Pelletier, P. Renault, T. Sicheritz-Ponten, K. Turner, H. Zhu, C. Yu, M. Jian, Y. Zhou, Y. Li, X. Zhang, N. Qin, H. Yang, J. Wang, S. Brunak, J. Dore, F. Guarner, K. Kristiansen, O. Pedersen, J. Parkhill, J. Weissenbach, P. Bork, and S. D. Ehrlich. A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464:59{65, 2010.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Paslier, D.L.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
Sicheritz-Ponten, T.31
Turner, K.32
Zhu, H.33
Yu, C.34
Jian, M.35
Zhou, Y.36
Li, Y.37
Zhang, X.38
Qin, N.39
Yang, H.40
Wang, J.41
Brunak, S.42
Dore, J.43
Guarner, F.44
Kristiansen, K.45
Pedersen, O.46
Parkhill, J.47
Weissenbach, J.48
Bork, P.49
Ehrlich, S.D.50
more..
-
23
-
-
84863023598
-
The impact of normalization and phylogenetic information on estimating the distance for metagenomes
-
C.-H. Su, T.-Y. Wang, M.-T. Hsu, F. C.-H. Weng, C.-Y. Kao, D. Wang, and H.-K. Tsai. The impact of normalization and phylogenetic information on estimating the distance for metagenomes. IEEE Transactions on Computational Biology and Bioinformatics, 2(9):619{628, 2012.
-
(2012)
IEEE Transactions on Computational Biology and Bioinformatics
, vol.2
, Issue.9
, pp. 619-628
-
-
Su, C.-H.1
Wang, T.-Y.2
Hsu, M.-T.3
Weng, F.C.-H.4
Kao, C.-Y.5
Wang, D.6
Tsai, H.-K.7
-
24
-
-
70449713952
-
The nih human microbiome project
-
The NIH HMP Working Group et al
-
The NIH HMP Working Group et al. The nih human microbiome project. Genome Research, 19(12):2317{2323, 2009.
-
(2009)
Genome Research
, vol.19
, Issue.12
, pp. 2317-2323
-
-
-
25
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
R. Tibshirani. Regression shrinkage and selection via the lasso. Journal of Royal Statistics Society, 58(1):267{288, 1996.
-
(1996)
Journal of Royal Statistics Society
, vol.58
, Issue.1
, pp. 267-288
-
-
Tibshirani, R.1
-
26
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
P. Turnbaugh, M. Hamady, T. Yatsunenko, B. Cantarel, A. Duncan, R. Ley, M. Sogin, W. Jones, B. Roe, J. Afiourtit, M. Egholm, B. Henrissat, A. Heath, R. Knight, and J. Gordon. A core gut microbiome in obese and lean twins. Nature, 475:480{485, 2009.
-
(2009)
Nature
, vol.475
, pp. 480-485
-
-
Turnbaugh, P.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.4
Duncan, A.5
Ley, R.6
Sogin, M.7
Jones, W.8
Roe, B.9
Afiourtit, J.10
Egholm, M.11
Henrissat, B.12
Heath, A.13
Knight, R.14
Gordon, J.15
-
28
-
-
84870061093
-
Correlation of intestinal microbiota with overweight and obesity in kazakh school children
-
P. Xu, M. Li, J. Zhang, and T. Zhang. Correlation of intestinal microbiota with overweight and obesity in kazakh school children. BMC Microbiology, 12(283), 2012.
-
(2012)
BMC Microbiology
, vol.12
, Issue.283
-
-
Xu, P.1
Li, M.2
Zhang, J.3
Zhang, T.4
-
30
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
T. Yatsunenko, F. E. Rey, M. J. Manary, I. Trehan, M. G. Dominguez-Bello, M. Contreras, M. Magris, G. Hidalgo, R. N. Baldassano, A. P. Anokhin, A. C. Heath, B. Warner, J. Reeder, J. Kuczynski, J. G. Caporaso, C. A. Lozupone, C. Lauber, J. C. Clemente, D. Knights, R. Knight, and J. Gordon. Human gut microbiome viewed across age and geography. Nature, 486:222{227, 2012.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.21
more..
-
31
-
-
84904651375
-
The emerging big dimensionality
-
August
-
Y. Zhai, Y.-S. Ong, and I. W. Tsang. The Emerging "Big Dimensionality". Computational Intelligence Magazine, 9(3):14{26, August 2014.
-
(2014)
Computational Intelligence Magazine
, vol.9
, Issue.3
, pp. 14-26
-
-
Zhai, Y.1
Ong, Y.-S.2
Tsang, I.W.3
-
32
-
-
16244401458
-
Regularization and variable selection via the elastic net
-
H. Zou and T. Hastie. Regularization and variable selection via the elastic net. Journal of the Royal Statistical Society, 67(2):301{320, 2005.
-
(2005)
Journal of the Royal Statistical Society
, vol.67
, Issue.2
, pp. 301-320
-
-
Zou, H.1
Hastie, T.2
|