-
1
-
-
17044376304
-
GCN2 whets the appetite for amino acids
-
[CrossRef] [PubMed]
-
Dever, T.E.; Hinnebusch, A.G. GCN2 whets the appetite for amino acids. Mol. Cell 2005, 18, 141-142. [CrossRef] [PubMed]
-
(2005)
Mol. Cell
, vol.18
, pp. 141-142
-
-
Dever, T.E.1
Hinnebusch, A.G.2
-
2
-
-
79953147308
-
Apoptotic regulation and tRNA
-
[CrossRef] [PubMed]
-
Mei, Y.; Stonestrom, A.; Hou, Y.M.; Yang, X. Apoptotic regulation and tRNA. Protein Cell 2010, 1, 795-801. [CrossRef] [PubMed]
-
(2010)
Protein Cell
, vol.1
, pp. 795-801
-
-
Mei, Y.1
Stonestrom, A.2
Hou, Y.M.3
Yang, X.4
-
3
-
-
0030632048
-
The N-end rule pathway of protein degradation
-
[CrossRef] [PubMed]
-
Varshavsky, A. The N-end rule pathway of protein degradation. Genes Cells 1997, 2, 13-28. [CrossRef] [PubMed]
-
(1997)
Genes Cells
, vol.2
, pp. 13-28
-
-
Varshavsky, A.1
-
4
-
-
84877088375
-
Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Hopper, A.K. Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae. Genetics 2013, 194, 43-67. [CrossRef] [PubMed]
-
(2013)
Genetics
, vol.194
, pp. 43-67
-
-
Hopper, A.K.1
-
5
-
-
84906213108
-
tRNAs as regulators of biological processes
-
[CrossRef] [PubMed]
-
Raina, M.; Ibba, M. tRNAs as regulators of biological processes. Front. Genet. 2014, 5, 171. [CrossRef] [PubMed]
-
(2014)
Front. Genet
, vol.5
, pp. 171
-
-
Raina, M.1
Ibba, M.2
-
6
-
-
84924192559
-
Emerging roles of tRNA in adaptive translation, signalling dynamics and disease
-
[CrossRef] [PubMed]
-
Kirchner, S.; Ignatova, Z. Emerging roles of tRNA in adaptive translation, signalling dynamics and disease. Nat. Rev. Genet. 2015, 16, 98-112. [CrossRef] [PubMed]
-
(2015)
Nat. Rev. Genet
, vol.16
, pp. 98-112
-
-
Kirchner, S.1
Ignatova, Z.2
-
7
-
-
84961678866
-
Role of tRNA modifications in human diseases
-
[CrossRef] [PubMed]
-
Torres, A.G.; Batlle, E.; Ribas de Pouplana, L. Role of tRNA modifications in human diseases. Trends Mol. Med. 2014, 4914, 10. [CrossRef] [PubMed]
-
(2014)
Trends Mol. Med
, vol.4914
, pp. 10
-
-
Torres, A.G.1
Batlle, E.2
De Ribas Pouplana, L.3
-
8
-
-
84931575609
-
Controlling translation via modulation of tRNA levels
-
[CrossRef] [PubMed]
-
Wilusz, J.E. Controlling translation via modulation of tRNA levels. Wiley Interdiscip. Rev. RNA 2015, 6, 453-470. [CrossRef] [PubMed]
-
(2015)
Wiley Interdiscip. Rev. RNA
, vol.6
, pp. 453-470
-
-
Wilusz, J.E.1
-
9
-
-
84929410801
-
Quality control pathways for nucleus-encoded eukaryotic tRNA biosynthesis and subcellular trafficking
-
[CrossRef] [PubMed]
-
Hopper, A.K.; Huang, H.Y. Quality control pathways for nucleus-encoded eukaryotic tRNA biosynthesis and subcellular trafficking. Mol. Cell Biol. 2015, 35, 2052-2058. [CrossRef] [PubMed]
-
(2015)
Mol. Cell Biol
, vol.35
, pp. 2052-2058
-
-
Hopper, A.K.1
Huang, H.Y.2
-
10
-
-
77952891717
-
RNA metabolism and the pathogenesis of motor neuron diseases
-
[CrossRef] [PubMed]
-
Lemmens, R.; Moore, M.J.; Al-Chalabi, A.; Brown, R.H., Jr.; Robberecht, W. RNA metabolism and the pathogenesis of motor neuron diseases. Trends Neurosci. 2010, 33, 249-258. [CrossRef] [PubMed]
-
(2010)
Trends Neurosci
, vol.33
, pp. 249-258
-
-
Lemmens, R.1
Moore, M.J.2
Al-Chalabi, A.3
Brown, R.H.4
Robberecht, W.5
-
11
-
-
50449096432
-
tRNA splicing endonuclease mutations cause pontocerebellar hypoplasia
-
[CrossRef] [PubMed]
-
Budde, B.S.; Namavar, Y.; Barth, P.G.; Poll-The, B.T.; Nurnberg, G.; Becker, C.; van Ruissen, F.; Weterman, M.A.; Fluiter, K.; te Beek, E.T.; et al. tRNA splicing endonuclease mutations cause pontocerebellar hypoplasia. Nat. Genet. 2008, 40, 1113-1118. [CrossRef] [PubMed]
-
(2008)
Nat. Genet
, vol.40
, pp. 1113-1118
-
-
Budde, B.S.1
Namavar, Y.2
Barth, P.G.3
Poll-The, B.T.4
Nurnberg, G.5
Becker, C.6
Van Ruissen, F.7
Weterman, M.A.8
Fluiter, K.9
Te Beek, E.T.10
-
12
-
-
84947031580
-
Defects in tRNA anticodon loop 2'-O-methylation are implicated in nonsyndromic x-linked intellectual disability due to mutations in FTSJ1
-
[CrossRef] [PubMed]
-
Guy, M.P.; Shaw, M.; Weiner, C.L.; Hobson, L.; Stark, Z.; Rose, K.; Kalscheuer, V.M.; Gecz, J.; Phizicky, E.M. Defects in tRNA anticodon loop 2'-O-methylation are implicated in nonsyndromic x-linked intellectual disability due to mutations in FTSJ1. Hum. Mutat. 2015, 36, 1176-1187. [CrossRef] [PubMed]
-
(2015)
Hum. Mutat
, vol.36
, pp. 1176-1187
-
-
Guy, M.P.1
Shaw, M.2
Weiner, C.L.3
Hobson, L.4
Stark, Z.5
Rose, K.6
Kalscheuer, V.M.7
Gecz, J.8
Phizicky, E.M.9
-
13
-
-
75149181741
-
Pan, T. tRNA over-expression in breast cancer and functional consequences
-
[CrossRef] [PubMed]
-
Pavon-Eternod, M.; Gomes, S.; Geslain, R.; Dai, Q.; Rosner, M.R.; Pan, T. tRNA over-expression in breast cancer and functional consequences. Nucleic Acids Res. 2009, 37, 7268-7280. [CrossRef] [PubMed]
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7268-7280
-
-
Pavon-Eternod, M.1
Gomes, S.2
Geslain, R.3
Dai, Q.4
Rosner, M.R.5
-
14
-
-
84872870536
-
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
-
[CrossRef] [PubMed]
-
Maute, R.L.; Schneider, C.; Sumazin, P.; Holmes, A.; Califano, A.; Basso, K.; Dalla-Favera, R. tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma. Proc. Natl. Acad. Sci. USA 2013, 110, 1404-1409. [CrossRef] [PubMed]
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 1404-1409
-
-
Maute, R.L.1
Schneider, C.2
Sumazin, P.3
Holmes, A.4
Califano, A.5
Basso, K.6
Dalla-Favera, R.7
-
15
-
-
84875465521
-
Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells
-
[CrossRef] [PubMed]
-
Pavon-Eternod, M.; Gomes, S.; Rosner, M.R.; Pan, T. Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells. RNA 2013, 19, 461-466. [CrossRef] [PubMed]
-
(2013)
RNA
, vol.19
, pp. 461-466
-
-
Pavon-Eternod, M.1
Gomes, S.2
Rosner, M.R.3
Pan, T.4
-
16
-
-
77956276464
-
tRNA biology charges to the front
-
[CrossRef] [PubMed]
-
Phizicky, E.M.; Hopper, A.K. tRNA biology charges to the front. Genes Dev. 2010, 24, 1832-1860. [CrossRef] [PubMed]
-
(2010)
Genes Dev
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
17
-
-
84869093362
-
Extensive degradation of RNA precursors by the exosome in wild-type cells
-
[CrossRef] [PubMed]
-
Gudipati, R.K.; Xu, Z.; Lebreton, A.; Seraphin, B.; Steinmetz, L.M.; Jacquier, A.; Libri, D. Extensive degradation of RNA precursors by the exosome in wild-type cells. Mol. Cell 2012, 48, 409-421. [CrossRef] [PubMed]
-
(2012)
Mol. Cell
, vol.48
, pp. 409-421
-
-
Gudipati, R.K.1
Xu, Z.2
Lebreton, A.3
Seraphin, B.4
Steinmetz, L.M.5
Jacquier, A.6
Libri, D.7
-
18
-
-
0032428969
-
The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA
-
[CrossRef] [PubMed]
-
Anderson, J.; Phan, L.; Cuesta, R.; Carlson, B.A.; Pak, M.; Asano, K.; Bjork, G.R.; Tamame, M.; Hinnebusch, A.G. The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev. 1998, 12, 3650-3662. [CrossRef] [PubMed]
-
(1998)
Genes Dev
, vol.12
, pp. 3650-3662
-
-
Anderson, J.1
Phan, L.2
Cuesta, R.3
Carlson, B.A.4
Pak, M.5
Asano, K.6
Bjork, G.R.7
Tamame, M.8
Hinnebusch, A.G.9
-
19
-
-
84910675377
-
tRNA modifications regulate translation during cellular stress
-
[CrossRef] [PubMed]
-
Gu, C.; Begley, T.J.; Dedon, P.C. tRNA modifications regulate translation during cellular stress. FEBS Lett. 2014, 588, 4287-4296. [CrossRef] [PubMed]
-
(2014)
FEBS Lett
, vol.588
, pp. 4287-4296
-
-
Gu, C.1
Begley, T.J.2
Dedon, P.C.3
-
20
-
-
0026059582
-
In vivo pre-tRNA processing in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
O'Connor, J.P.; Peebles, C.L. In vivo pre-tRNA processing in Saccharomyces cerevisiae. Mol. Cell Biol. 1991, 11, 425-439. [CrossRef] [PubMed]
-
(1991)
Mol. Cell Biol
, vol.11
, pp. 425-439
-
-
O'connor, J.P.1
Peebles, C.L.2
-
21
-
-
0037439213
-
tRNA transfers to the limelight
-
[CrossRef] [PubMed]
-
Hopper, A.K.; Phizicky, E.M. tRNA transfers to the limelight. Genes Dev. 2003, 17, 162-180. [CrossRef] [PubMed]
-
(2003)
Genes Dev
, vol.17
, pp. 162-180
-
-
Hopper, A.K.1
Phizicky, E.M.2
-
22
-
-
0035997350
-
A plurality of ribonucleoprotein enzymes
-
[CrossRef] [PubMed]
-
Xiao, S.; Scott, F.; Fierke, C.A.; Engelke, D.R. Eukaryotic ribonuclease P: A plurality of ribonucleoprotein enzymes. Annu. Rev. Biochem. 2002, 71, 165-189. [CrossRef] [PubMed]
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 165-189
-
-
Xiao, S.1
Scott, F.2
Fierke, C.A.3
Engelke, D.R.4
Eukaryotic Ribonuclease, P.5
-
23
-
-
78650444089
-
Archaeal/eukaryal RNase P: Subunits, functions and RNA diversification
-
[CrossRef] [PubMed]
-
Jarrous, N.; Gopalan, V. Archaeal/eukaryal RNase P: Subunits, functions and RNA diversification. Nucleic Acids Res. 2010, 38, 7885-7894. [CrossRef] [PubMed]
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7885-7894
-
-
Jarrous, N.1
Gopalan, V.2
-
24
-
-
84861141850
-
Prorp proteins support RNase P activity in both organelles and the nucleus in Arabidopsis
-
[CrossRef] [PubMed]
-
Gutmann, B.; Gobert, A.; Giege, P. Prorp proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Genes Dev. 2012, 26, 1022-1027. [CrossRef] [PubMed]
-
(2012)
Genes Dev
, vol.26
, pp. 1022-1027
-
-
Gutmann, B.1
Gobert, A.2
Giege, P.3
-
25
-
-
84885134261
-
Ppr proteins shed a new light on RNase P biology
-
[CrossRef] [PubMed]
-
Pinker, F.; Bonnard, G.; Gobert, A.; Gutmann, B.; Hammani, K.; Sauter, C.; Gegenheimer, P.A.; Giege, P. Ppr proteins shed a new light on RNase P biology. RNA Biol. 2013, 10, 9. [CrossRef] [PubMed]
-
(2013)
RNA Biol
, vol.10
, pp. 9
-
-
Pinker, F.1
Bonnard, G.2
Gobert, A.3
Gutmann, B.4
Hammani, K.5
Sauter, C.6
Gegenheimer, P.A.7
Giege, P.8
-
26
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
[CrossRef]
-
Guerrier-Takada, C.; Gardiner, K.; Marsh, T.; Pace, N.; Altman, S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 1983, 35, 849-857. [CrossRef]
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
27
-
-
25644433566
-
Crystal structure of the RNA component of bacterial ribonuclease p
-
[CrossRef] [PubMed]
-
Torres-Larios, A.; Swinger, K.K.; Krasilnikov, A.S.; Pan, T.; Mondragon, A. Crystal structure of the RNA component of bacterial ribonuclease p. Nature 2005, 437, 584-587. [CrossRef] [PubMed]
-
(2005)
Nature
, vol.437
, pp. 584-587
-
-
Torres-Larios, A.1
Swinger, K.K.2
Krasilnikov, A.S.3
Pan, T.4
Mondragon, A.5
-
28
-
-
0033529256
-
RNAs from some archaea are catalytically active
-
[CrossRef] [PubMed]
-
Pannucci, J.A.; Haas, E.S.; Hall, T.A.; Harris, J.K.; Brown, J.W. RNase P RNAs from some archaea are catalytically active. Proc. Natl. Acad. Sci. USA 1999, 96, 7803-7808. [CrossRef] [PubMed]
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7803-7808
-
-
Pannucci, J.A.1
Haas, E.S.2
Hall, T.A.3
Harris, J.K.4
Brown, J.W.5
Rnase, P.6
-
29
-
-
77956274154
-
Ribosomal protein L7Ae is a subunit of archaeal RNase P
-
[CrossRef] [PubMed]
-
Cho, I.M.; Lai, L.B.; Susanti, D.; Mukhopadhyay, B.; Gopalan, V. Ribosomal protein L7Ae is a subunit of archaeal RNase P. Proc. Natl. Acad. Sci. USA 2010, 107, 14573-14578. [CrossRef] [PubMed]
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 14573-14578
-
-
Cho, I.M.1
Lai, L.B.2
Susanti, D.3
Mukhopadhyay, B.4
Gopalan, V.5
-
30
-
-
33750489707
-
Structure and function of eukaryotic ribonuclease P RNA
-
[CrossRef] [PubMed]
-
Marquez, S.M.; Chen, J.L.; Evans, D.; Pace, N.R. Structure and function of eukaryotic ribonuclease P RNA. Mol. Cell 2006, 24, 445-456. [CrossRef] [PubMed]
-
(2006)
Mol. Cell
, vol.24
, pp. 445-456
-
-
Marquez, S.M.1
Chen, J.L.2
Evans, D.3
Pace, N.R.4
-
31
-
-
17844385813
-
Structural implications of novel diversity in eucaryal RNase P RNA
-
[CrossRef] [PubMed]
-
Marquez, S.M.; Harris, J.K.; Kelley, S.T.; Brown, J.W.; Dawson, S.C.; Roberts, E.C.; Pace, N.R. Structural implications of novel diversity in eucaryal RNase P RNA. RNA 2005, 11, 739-751. [CrossRef] [PubMed]
-
(2005)
RNA
, vol.11
, pp. 739-751
-
-
Marquez, S.M.1
Harris, J.K.2
Kelley, S.T.3
Brown, J.W.4
Dawson, S.C.5
Roberts, E.C.6
Pace, N.R.7
-
32
-
-
33847784925
-
Mediates cleavage in the absence of protein
-
[CrossRef] [PubMed]
-
Kikovska, E.; Svard, S.G.; Kirsebom, L.A. Eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc. Natl. Acad. Sci. USA 2007, 104, 2062-2067. [CrossRef] [PubMed]
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2062-2067
-
-
Kikovska, E.1
Svard, S.G.2
Kirsebom, L.A.3
Eukaryotic Rnase, P.4
-
33
-
-
0030576503
-
Maturation pathways for E. Coli tRNA precursors: A random multienzyme process in vivo
-
[CrossRef]
-
Li, Z.; Deutscher, M.P. Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo. Cell 1996, 86, 503-512. [CrossRef]
-
(1996)
Cell
, vol.86
, pp. 503-512
-
-
Li, Z.1
Deutscher, M.P.2
-
34
-
-
84890588127
-
tRNA 3' processing in yeast involves tRNAse Z, Rex1, and Rrp6
-
[CrossRef] [PubMed]
-
Skowronek, E.; Grzechnik, P.; Spath, B.; Marchfelder, A.; Kufel, J. tRNA 3' processing in yeast involves tRNAse Z, Rex1, and Rrp6. RNA 2014, 20, 115-130. [CrossRef] [PubMed]
-
(2014)
RNA
, vol.20
, pp. 115-130
-
-
Skowronek, E.1
Grzechnik, P.2
Spath, B.3
Marchfelder, A.4
Kufel, J.5
-
35
-
-
44149101017
-
Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation
-
[CrossRef] [PubMed]
-
Copela, L.A.; Fernandez, C.F.; Sherrer, R.L.; Wolin, S.L. Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation. RNA 2008, 14, 1214-1227. [CrossRef] [PubMed]
-
(2008)
RNA
, vol.14
, pp. 1214-1227
-
-
Copela, L.A.1
Fernandez, C.F.2
Sherrer, R.L.3
Wolin, S.L.4
-
36
-
-
58549100937
-
Rex1p deficiency leads to accumulation of precursor initiator tRNAmet and polyadenylation of substrate RNAs in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Ozanick, S.G.; Wang, X.; Costanzo, M.; Brost, R.L.; Boone, C.; Anderson, J.T. Rex1p deficiency leads to accumulation of precursor initiator tRNAmet and polyadenylation of substrate RNAs in Saccharomyces cerevisiae. Nucleic Acids Res. 2009, 37, 298-308. [CrossRef] [PubMed]
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 298-308
-
-
Ozanick, S.G.1
Wang, X.2
Costanzo, M.3
Brost, R.L.4
Boone, C.5
Anderson, J.T.6
-
37
-
-
0033777266
-
Function of the Ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA
-
[CrossRef] [PubMed]
-
Van Hoof, A.; Staples, R.R.; Baker, R.E.; Parker, R. Function of the Ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA. Mol. Cell Biol. 2000, 20, 8230-8243. [CrossRef] [PubMed]
-
(2000)
Mol. Cell Biol
, vol.20
, pp. 8230-8243
-
-
Van Hoof, A.1
Staples, R.R.2
Baker, R.E.3
Parker, R.4
-
38
-
-
26444483970
-
Characterization of Trz1, a yeast homolog of the human candidate prostate cancer susceptibility gene ELAC2 encoding tRNAse Z
-
[CrossRef] [PubMed]
-
Chen, Y.; Beck, A.; Davenport, C.; Shattuck, D.; Tavtigian, S.V. Characterization of Trz1, a yeast homolog of the human candidate prostate cancer susceptibility gene ELAC2 encoding tRNAse Z. BMC Mol. Biol. 2005, 6, 12. [CrossRef] [PubMed]
-
(2005)
BMC Mol. Biol
, vol.6
, pp. 12
-
-
Chen, Y.1
Beck, A.2
Davenport, C.3
Shattuck, D.4
Tavtigian, S.V.5
-
39
-
-
84857878816
-
RNase Z and the RNA degradosome are part of a stable supercomplex
-
[CrossRef] [PubMed]
-
Daoud, R.; Forget, L.; Lang, B.F. Yeast mitochondrial RNase P, RNase Z and the RNA degradosome are part of a stable supercomplex. Nucleic Acids Res. 2012, 40, 1728-1736. [CrossRef] [PubMed]
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1728-1736
-
-
Daoud, R.1
Forget, L.2
Lang, B.F.3
Yeast Mitochondrial Rnase, P.4
-
40
-
-
80052272097
-
3' processing of eukaryotic precursor tRNAs
-
[CrossRef] [PubMed]
-
Maraia, R.J.; Lamichhane, T.N. 3' processing of eukaryotic precursor tRNAs. Wiley Interdiscip. Rev. RNA 2011, 2, 362-375. [CrossRef] [PubMed]
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 362-375
-
-
Maraia, R.J.1
Lamichhane, T.N.2
-
41
-
-
0028891242
-
A yeast RNA binding protein that resembles the human autoantigen La
-
[CrossRef] [PubMed]
-
Lin-Marq, N.; Clarkson, S.G. A yeast RNA binding protein that resembles the human autoantigen La. J. Mol. Biol. 1995, 245, 81-85. [CrossRef] [PubMed]
-
(1995)
J. Mol. Biol
, vol.245
, pp. 81-85
-
-
Lin-Marq, N.1
Clarkson, S.G.2
-
42
-
-
0021305722
-
Purified lupus antigen La recognizes an oligouridylate stretch common to the 3' termini of RNA polymerase iii transcripts
-
[CrossRef]
-
Stefano, J.E. Purified lupus antigen La recognizes an oligouridylate stretch common to the 3' termini of RNA polymerase iii transcripts. Cell 1984, 36, 145-154. [CrossRef]
-
(1984)
Cell
, vol.36
, pp. 145-154
-
-
Stefano, J.E.1
-
43
-
-
0030904723
-
The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors
-
[CrossRef]
-
Yoo, C.J.; Wolin, S.L. The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors. Cell 1997, 89, 393-402. [CrossRef]
-
(1997)
Cell
, vol.89
, pp. 393-402
-
-
Yoo, C.J.1
Wolin, S.L.2
-
44
-
-
0347747969
-
A La protein requirement for efficient pre-tRNA folding
-
[CrossRef] [PubMed]
-
Chakshusmathi, G.; Kim, S.D.; Rubinson, D.A.; Wolin, S.L. A La protein requirement for efficient pre-tRNA folding. EMBO J. 2003, 22, 6562-6572. [CrossRef] [PubMed]
-
(2003)
EMBO J
, vol.22
, pp. 6562-6572
-
-
Chakshusmathi, G.1
Kim, S.D.2
Rubinson, D.A.3
Wolin, S.L.4
-
45
-
-
0031469506
-
The La protein in schizosaccharomyces pombe: A conserved yet dispensable phosphoprotein that functions in tRNA maturation
-
[PubMed]
-
Van Horn, D.J.; Yoo, C.J.; Xue, D.; Shi, H.; Wolin, S.L. The La protein in schizosaccharomyces pombe: A conserved yet dispensable phosphoprotein that functions in tRNA maturation. RNA 1997, 3, 1434-1443. [PubMed]
-
(1997)
RNA
, vol.3
, pp. 1434-1443
-
-
Van Horn, D.J.1
Yoo, C.J.2
Xue, D.3
Shi, H.4
Wolin, S.L.5
-
46
-
-
84958691767
-
Control of Saccharomyces cerevisiae pre-tRNA processing by environmental conditions
-
[CrossRef] [PubMed]
-
Foretek, D.; Wu, J.; Hopper, A.K.; Boguta, M. Control of Saccharomyces cerevisiae pre-tRNA processing by environmental conditions. RNA 2016, 22, 339-349. [CrossRef] [PubMed]
-
(2016)
RNA
, vol.22
, pp. 339-349
-
-
Foretek, D.1
Wu, J.2
Hopper, A.K.3
Boguta, M.4
-
47
-
-
84944680246
-
Codon-biased translation can be regulated by wobble-base tRNA modification systems during cellular stress responses
-
[CrossRef] [PubMed]
-
Endres, L.; Dedon, P.C.; Begley, T.J. Codon-biased translation can be regulated by wobble-base tRNA modification systems during cellular stress responses. RNA Biol. 2015, 12, 603-614. [CrossRef] [PubMed]
-
(2015)
RNA Biol
, vol.12
, pp. 603-614
-
-
Endres, L.1
Dedon, P.C.2
Begley, T.J.3
-
48
-
-
0033637993
-
Control of transfer RNA maturation by phosphorylation of the human La antigen on serine 366
-
[CrossRef]
-
Intine, R.V.; Sakulich, A.L.; Koduru, S.B.; Huang, Y.; Pierstorff, E.; Goodier, J.L.; Phan, L.; Maraia, R.J. Control of transfer RNA maturation by phosphorylation of the human La antigen on serine 366. Mol. Cell 2000, 6, 339-348. [CrossRef]
-
(2000)
Mol. Cell
, vol.6
, pp. 339-348
-
-
Intine, R.V.1
Sakulich, A.L.2
Koduru, S.B.3
Huang, Y.4
Pierstorff, E.5
Goodier, J.L.6
Phan, L.7
Maraia, R.J.8
-
49
-
-
0345276475
-
Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs
-
[CrossRef]
-
Intine, R.V.; Tenenbaum, S.A.; Sakulich, A.L.; Keene, J.D.; Maraia, R.J. Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Mol. Cell 2003, 12, 1301-1307. [CrossRef]
-
(2003)
Mol. Cell
, vol.12
, pp. 1301-1307
-
-
Intine, R.V.1
Tenenbaum, S.A.2
Sakulich, A.L.3
Keene, J.D.4
Maraia, R.J.5
-
50
-
-
0032729827
-
The La (SS-B) autoantigen, a key protein in RNA biogenesis, is dephosphorylated and cleaved early during apoptosis
-
[CrossRef] [PubMed]
-
Rutjes, S.A.; Utz, P.J.; van der Heijden, A.; Broekhuis, C.; van Venrooij, W.J.; Pruijn, G.J. The La (SS-B) autoantigen, a key protein in RNA biogenesis, is dephosphorylated and cleaved early during apoptosis. Cell Death Differ. 1999, 6, 976-986. [CrossRef] [PubMed]
-
(1999)
Cell Death Differ
, vol.6
, pp. 976-986
-
-
Rutjes, S.A.1
Utz, P.J.2
Van Der Heijden, A.3
Broekhuis, C.4
Van Venrooij, W.J.5
Pruijn, G.J.6
-
51
-
-
0027288847
-
Substitution of the 3' terminal adenosine residue of transfer RNA in vivo
-
[CrossRef] [PubMed]
-
Reuven, N.B.; Deutscher, M.P. Substitution of the 3' terminal adenosine residue of transfer RNA in vivo. Proc. Natl. Acad. Sci. USA 1993, 90, 4350-4353. [CrossRef] [PubMed]
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4350-4353
-
-
Reuven, N.B.1
Deutscher, M.P.2
-
52
-
-
0023394389
-
tRNA nucleotidyltransferase is not essential for Escherichia coli viability
-
[PubMed]
-
Zhu, L.; Deutscher, M.P. tRNA nucleotidyltransferase is not essential for Escherichia coli viability. EMBO J. 1987, 6, 2473-2477. [PubMed]
-
(1987)
EMBO J
, vol.6
, pp. 2473-2477
-
-
Zhu, L.1
Deutscher, M.P.2
-
53
-
-
0025130559
-
Isolation of a temperature-sensitive mutant with an altered tRNA nucleotidyltransferase and cloning of the gene encoding tRNA nucleotidyltransferase in the yeast Saccharomyces cerevisiae
-
[PubMed]
-
Aebi, M.; Kirchner, G.; Chen, J.Y.; Vijayraghavan, U.; Jacobson, A.; Martin, N.C.; Abelson, J. Isolation of a temperature-sensitive mutant with an altered tRNA nucleotidyltransferase and cloning of the gene encoding tRNA nucleotidyltransferase in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 1990, 265, 16216-16220. [PubMed]
-
(1990)
J. Biol. Chem
, vol.265
, pp. 16216-16220
-
-
Aebi, M.1
Kirchner, G.2
Chen, J.Y.3
Vijayraghavan, U.4
Jacobson, A.5
Martin, N.C.6
Abelson, J.7
-
54
-
-
0028657592
-
How single genes provide tRNA processing enzymes to mitochondria, nuclei and the cytosol
-
[CrossRef]
-
Martin, N.C.; Hopper, A.K. How single genes provide tRNA processing enzymes to mitochondria, nuclei and the cytosol. Biochimie 1994, 76, 1161-1167. [CrossRef]
-
(1994)
Biochimie
, vol.76
, pp. 1161-1167
-
-
Martin, N.C.1
Hopper, A.K.2
-
55
-
-
84884638166
-
Reversible and rapid transfer-RNA deactivation as a mechanism of translational repression in stress
-
[CrossRef] [PubMed]
-
Czech, A.; Wende, S.; Morl, M.; Pan, T.; Ignatova, Z. Reversible and rapid transfer-RNA deactivation as a mechanism of translational repression in stress. PLoS Genet. 2013, 9, e1003767. [CrossRef] [PubMed]
-
(2013)
Plos Genet
, vol.9
-
-
Czech, A.1
Wende, S.2
Morl, M.3
Pan, T.4
Ignatova, Z.5
-
56
-
-
84922688087
-
On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme
-
[CrossRef] [PubMed]
-
Kuhn, C.D.; Wilusz, J.E.; Zheng, Y.; Beal, P.A.; Joshua-Tor, L. On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme. Cell 2015, 160, 644-658. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.160
, pp. 644-658
-
-
Kuhn, C.D.1
Wilusz, J.E.2
Zheng, Y.3
Beal, P.A.4
Joshua-Tor, L.5
-
57
-
-
81055122667
-
tRNAs marked with CCACCA are targeted for degradation
-
[CrossRef] [PubMed]
-
Wilusz, J.E.; Whipple, J.M.; Phizicky, E.M.; Sharp, P.A. tRNAs marked with CCACCA are targeted for degradation. Science 2011, 334, 817-821. [CrossRef] [PubMed]
-
(2011)
Science
, vol.334
, pp. 817-821
-
-
Wilusz, J.E.1
Whipple, J.M.2
Phizicky, E.M.3
Sharp, P.A.4
-
58
-
-
58149191269
-
Modomics: A database of RNA modification pathways. 2008 update
-
[CrossRef] [PubMed]
-
Czerwoniec, A.; Dunin-Horkawicz, S.; Purta, E.; Kaminska, K.H.; Kasprzak, J.M.; Bujnicki, J.M.; Grosjean, H.; Rother, K. Modomics: A database of RNA modification pathways. 2008 update. Nucleic Acids Res. 2009, 37, D118-D121. [CrossRef] [PubMed]
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D118-D121
-
-
Czerwoniec, A.1
Dunin-Horkawicz, S.2
Purta, E.3
Kaminska, K.H.4
Kasprzak, J.M.5
Bujnicki, J.M.6
Grosjean, H.7
Rother, K.8
-
59
-
-
84871436566
-
Modifications: Nature's combinatorial chemistry playground. Wiley Interdiscip
-
[CrossRef] [PubMed]
-
Jackman, J.E.; Alfonzo, J.D. Transfer RNA modifications: Nature's combinatorial chemistry playground. Wiley Interdiscip. Rev. RNA 2013, 4, 35-48. [CrossRef] [PubMed]
-
(2013)
Rev. RNA
, vol.4
, pp. 35-48
-
-
Jackman, J.E.1
Alfonzo, J.D.2
Transfer, R.3
-
60
-
-
84870152928
-
Biosynthesis and function of posttranscriptional modifications of transfer RNAs
-
[CrossRef] [PubMed]
-
El Yacoubi, B.; Bailly, M.; de Crecy-Lagard, V. Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Annu. Rev. Genet. 2012, 46, 69-95. [CrossRef] [PubMed]
-
(2012)
Annu. Rev. Genet
, vol.46
, pp. 69-95
-
-
El Yacoubi, B.1
Bailly, M.2
de Crecy-Lagard, V.3
-
61
-
-
0033527628
-
An adenosine deaminase that generates inosine at the wobble position of tRNAs
-
[CrossRef] [PubMed]
-
Gerber, A.P.; Keller, W. An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science 1999, 286, 1146-1149. [CrossRef] [PubMed]
-
(1999)
Science
, vol.286
, pp. 1146-1149
-
-
Gerber, A.P.1
Keller, W.2
-
62
-
-
34548816729
-
Role of a tRNA base modification and its precursors in frameshifting in eukaryotes
-
[CrossRef] [PubMed]
-
Waas, W.F.; Druzina, Z.; Hanan, M.; Schimmel, P. Role of a tRNA base modification and its precursors in frameshifting in eukaryotes. J. Biol. Chem. 2007, 282, 26026-26034. [CrossRef] [PubMed]
-
(2007)
J. Biol. Chem
, vol.282
, pp. 26026-26034
-
-
Waas, W.F.1
Druzina, Z.2
Hanan, M.3
Schimmel, P.4
-
63
-
-
62249160690
-
Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA
-
[CrossRef] [PubMed]
-
Leidel, S.; Pedrioli, P.G.; Bucher, T.; Brost, R.; Costanzo, M.; Schmidt, A.; Aebersold, R.; Boone, C.; Hofmann, K.; Peter, M. Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA. Nature 2009, 458, 228-232. [CrossRef] [PubMed]
-
(2009)
Nature
, vol.458
, pp. 228-232
-
-
Leidel, S.1
Pedrioli, P.G.2
Bucher, T.3
Brost, R.4
Costanzo, M.5
Schmidt, A.6
Aebersold, R.7
Boone, C.8
Hofmann, K.9
Peter, M.10
-
64
-
-
55549137731
-
Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems
-
[CrossRef] [PubMed]
-
Nakai, Y.; Nakai, M.; Hayashi, H. Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems. J. Biol. Chem. 2008, 283, 27469-27476. [CrossRef] [PubMed]
-
(2008)
J. Biol. Chem
, vol.283
, pp. 27469-27476
-
-
Nakai, Y.1
Nakai, M.2
Hayashi, H.3
-
65
-
-
57449121400
-
A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway
-
[CrossRef] [PubMed]
-
Schlieker, C.D.; Van der Veen, A.G.; Damon, J.R.; Spooner, E.; Ploegh, H.L. A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway. Proc. Natl. Acad. Sci. USA 2008, 105, 18255-18260. [CrossRef] [PubMed]
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 18255-18260
-
-
Schlieker, C.D.1
Van Der Veen, A.G.2
Damon, J.R.3
Spooner, E.4
Ploegh, H.L.5
-
66
-
-
84931576485
-
Optimization of codon translation rates via tRNA modifications maintains proteome integrity
-
[CrossRef] [PubMed]
-
Nedialkova, D.D.; Leidel, S.A. Optimization of codon translation rates via tRNA modifications maintains proteome integrity. Cell 2015, 161, 1606-1618. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.161
, pp. 1606-1618
-
-
Nedialkova, D.D.1
Leidel, S.A.2
-
67
-
-
84953302322
-
Trm9-catalyzed tRNA modifications regulate global protein expression by codon-biased translation
-
[CrossRef] [PubMed]
-
Deng, W.; Babu, I.R.; Su, D.; Yin, S.; Begley, T.J.; Dedon, P.C. Trm9-catalyzed tRNA modifications regulate global protein expression by codon-biased translation. PLoS Genet. 2015, 11, e1005706. [CrossRef] [PubMed]
-
(2015)
Plos Genet
, vol.11
-
-
Deng, W.1
Babu, I.R.2
Su, D.3
Yin, S.4
Begley, T.J.5
Dedon, P.C.6
-
68
-
-
0036226647
-
Dual function of the tRNA(M(5)U54)methyltransferase in tRNA maturation
-
[CrossRef] [PubMed]
-
Johansson, M.J.; Bystrom, A.S. Dual function of the tRNA(m(5)U54)methyltransferase in tRNA maturation. RNA 2002, 8, 324-335. [CrossRef] [PubMed]
-
(2002)
RNA
, vol.8
, pp. 324-335
-
-
Johansson, M.J.1
Bystrom, A.S.2
-
69
-
-
44149119097
-
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1
-
[CrossRef] [PubMed]
-
Chernyakov, I.; Whipple, J.M.; Kotelawala, L.; Grayhack, E.J.; Phizicky, E.M. Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1. Genes Dev. 2008, 22, 1369-1380. [CrossRef] [PubMed]
-
(2008)
Genes Dev
, vol.22
, pp. 1369-1380
-
-
Chernyakov, I.1
Whipple, J.M.2
Kotelawala, L.3
Grayhack, E.J.4
Phizicky, E.M.5
-
70
-
-
38049091553
-
Identification of yeast tRNA Um(44) 2'-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA(Ser) species
-
[CrossRef] [PubMed]
-
Kotelawala, L.; Grayhack, E.J.; Phizicky, E.M. Identification of yeast tRNA Um(44) 2'-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA(Ser) species. RNA 2008, 14, 158-169. [CrossRef] [PubMed]
-
(2008)
RNA
, vol.14
, pp. 158-169
-
-
Kotelawala, L.1
Grayhack, E.J.2
Phizicky, E.M.3
-
71
-
-
0035824521
-
Pus1p-dependent tRNA pseudouridinylation becomes essential when tRNA biogenesis is compromised in yeast
-
[CrossRef] [PubMed]
-
Grosshans, H.; Lecointe, F.; Grosjean, H.; Hurt, E.; Simos, G. Pus1p-dependent tRNA pseudouridinylation becomes essential when tRNA biogenesis is compromised in yeast. J. Biol. Chem. 2001, 276, 46333-46339. [CrossRef] [PubMed]
-
(2001)
J. Biol. Chem
, vol.276
, pp. 46333-46339
-
-
Grosshans, H.1
Lecointe, F.2
Grosjean, H.3
Hurt, E.4
Simos, G.5
-
72
-
-
29544450711
-
Rapid tRNA decay can result from lack of nonessential modifications
-
[CrossRef] [PubMed]
-
Alexandrov, A.; Chernyakov, I.; Gu, W.; Hiley, S.L.; Hughes, T.R.; Grayhack, E.J.; Phizicky, E.M. Rapid tRNA decay can result from lack of nonessential modifications. Mol. Cell 2006, 21, 87-96. [CrossRef] [PubMed]
-
(2006)
Mol. Cell
, vol.21
, pp. 87-96
-
-
Alexandrov, A.1
Chernyakov, I.2
Gu, W.3
Hiley, S.L.4
Hughes, T.R.5
Grayhack, E.J.6
Phizicky, E.M.7
-
73
-
-
84866622511
-
The yeast rapid tRNA decay pathway competes with elongation factor 1a for substrate tRNAs and acts on tRNAs lacking one or more of several modifications
-
[CrossRef] [PubMed]
-
Dewe, J.M.; Whipple, J.M.; Chernyakov, I.; Jaramillo, L.N.; Phizicky, E.M. The yeast rapid tRNA decay pathway competes with elongation factor 1a for substrate tRNAs and acts on tRNAs lacking one or more of several modifications. RNA 2012, 18, 1886-1896. [CrossRef] [PubMed]
-
(2012)
RNA
, vol.18
, pp. 1886-1896
-
-
Dewe, J.M.1
Whipple, J.M.2
Chernyakov, I.3
Jaramillo, L.N.4
Phizicky, E.M.5
-
74
-
-
80555131009
-
Initiation factor eIF2gamma promotes eIF2-GTP-Met-tRNAi(Met) ternary complex binding to the 40s ribosome
-
[CrossRef] [PubMed]
-
Shin, B.S.; Kim, J.R.; Walker, S.E.; Dong, J.; Lorsch, J.R.; Dever, T.E. Initiation factor eIF2gamma promotes eIF2-GTP-Met-tRNAi(Met) ternary complex binding to the 40s ribosome. Nat. Struct. Mol. Biol. 2011, 18, 1227-1234. [CrossRef] [PubMed]
-
(2011)
Nat. Struct. Mol. Biol
, vol.18
, pp. 1227-1234
-
-
Shin, B.S.1
Kim, J.R.2
Walker, S.E.3
Dong, J.4
Lorsch, J.R.5
Dever, T.E.6
-
75
-
-
84921374170
-
Functional importance of Psi38 and Psi39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast
-
[CrossRef] [PubMed]
-
Han, L.; Kon, Y.; Phizicky, E.M. Functional importance of Psi38 and Psi39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast. RNA 2015, 21, 188-201. [CrossRef] [PubMed]
-
(2015)
RNA
, vol.21
, pp. 188-201
-
-
Han, L.1
Kon, Y.2
Phizicky, E.M.3
-
76
-
-
84872584130
-
tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Preston, M.A.; D'Silva, S.; Kon, Y.; Phizicky, E.M. tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae. RNA 2013, 19, 243-256. [CrossRef] [PubMed]
-
(2013)
RNA
, vol.19
, pp. 243-256
-
-
Preston, M.A.1
D'silva, S.2
Kon, Y.3
Phizicky, E.M.4
-
77
-
-
84921365621
-
An evolutionary approach uncovers a diverse response of tRNA 2-thiolation to elevated temperatures in yeast
-
[CrossRef] [PubMed]
-
Alings, F.; Sarin, L.P.; Fufezan, C.; Drexler, H.C.; Leidel, S.A. An evolutionary approach uncovers a diverse response of tRNA 2-thiolation to elevated temperatures in yeast. RNA 2015, 21, 202-212. [CrossRef] [PubMed]
-
(2015)
RNA
, vol.21
, pp. 202-212
-
-
Alings, F.1
Sarin, L.P.2
Fufezan, C.3
Drexler, H.C.4
Leidel, S.A.5
-
78
-
-
84920999617
-
tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. Mol. Biol
-
[CrossRef] [PubMed]
-
Damon, J.R.; Pincus, D.; Ploegh, H.L. tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. Mol. Biol. Cell 2015, 26, 270-282. [CrossRef] [PubMed]
-
(2015)
Cell
, vol.26
, pp. 270-282
-
-
Damon, J.R.1
Pincus, D.2
Ploegh, H.L.3
-
79
-
-
78650683942
-
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress
-
[CrossRef] [PubMed]
-
Chan, C.T.; Dyavaiah, M.; DeMott, M.S.; Taghizadeh, K.; Dedon, P.C.; Begley, T.J. A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress. PLoS Genet. 2010, 6, e1001247. [CrossRef] [PubMed]
-
(2010)
Plos Genet
, vol.6
-
-
Chan, C.T.1
Dyavaiah, M.2
Demott, M.S.3
Taghizadeh, K.4
Dedon, P.C.5
Begley, T.J.6
-
80
-
-
84922180958
-
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
-
[CrossRef] [PubMed]
-
Carlile, T.M.; Rojas-Duran, M.F.; Zinshteyn, B.; Shin, H.; Bartoli, K.M.; Gilbert, W.V. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature 2014, 515, 143-146. [CrossRef] [PubMed]
-
(2014)
Nature
, vol.515
, pp. 143-146
-
-
Carlile, T.M.1
Rojas-Duran, M.F.2
Zinshteyn, B.3
Shin, H.4
Bartoli, K.M.5
Gilbert, W.V.6
-
81
-
-
84907527348
-
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA
-
[CrossRef] [PubMed]
-
Schwartz, S.; Bernstein, D.A.; Mumbach, M.R.; Jovanovic, M.; Herbst, R.H.; Leon-Ricardo, B.X.; Engreitz, J.M.; Guttman, M.; Satija, R.; Lander, E.S.; et al. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell 2014, 159, 148-162. [CrossRef] [PubMed]
-
(2014)
Cell
, vol.159
, pp. 148-162
-
-
Schwartz, S.1
Bernstein, D.A.2
Mumbach, M.R.3
Jovanovic, M.4
Herbst, R.H.5
Leon-Ricardo, B.X.6
Engreitz, J.M.7
Guttman, M.8
Satija, R.9
Lander, E.S.10
-
82
-
-
84864828979
-
Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins
-
[CrossRef] [PubMed]
-
Chan, C.T.; Pang, Y.L.; Deng, W.; Babu, I.R.; Dyavaiah, M.; Begley, T.J.; Dedon, P.C. Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins. Nat. Commun. 2012, 3, 937. [CrossRef] [PubMed]
-
(2012)
Nat. Commun
, vol.3
, pp. 937
-
-
Chan, C.T.1
Pang, Y.L.2
Deng, W.3
Babu, I.R.4
Dyavaiah, M.5
Begley, T.J.6
Dedon, P.C.7
-
83
-
-
84896342480
-
A system of RNA modifications and biased codon use controls cellular stress response at the level of translation
-
[CrossRef] [PubMed]
-
Dedon, P.C.; Begley, T.J. A system of RNA modifications and biased codon use controls cellular stress response at the level of translation. Chem. Res. Toxicol. 2014, 27, 330-337. [CrossRef] [PubMed]
-
(2014)
Chem. Res. Toxicol
, vol.27
, pp. 330-337
-
-
Dedon, P.C.1
Begley, T.J.2
-
84
-
-
84929408617
-
Highly predictive reprogramming of tRNA modifications is linked to selective expression of codon-biased genes
-
[CrossRef] [PubMed]
-
Chan, C.T.; Deng, W.; Li, F.; DeMott, M.S.; Babu, I.R.; Begley, T.J.; Dedon, P.C. Highly predictive reprogramming of tRNA modifications is linked to selective expression of codon-biased genes. Chem. Res. Toxicol. 2015, 28, 978-988. [CrossRef] [PubMed]
-
(2015)
Chem. Res. Toxicol
, vol.28
, pp. 978-988
-
-
Chan, C.T.1
Deng, W.2
Li, F.3
Demott, M.S.4
Babu, I.R.5
Begley, T.J.6
Dedon, P.C.7
-
85
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
[CrossRef] [PubMed]
-
Schaefer, M.; Pollex, T.; Hanna, K.; Tuorto, F.; Meusburger, M.; Helm, M.; Lyko, F. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev. 2010, 24, 1590-1595. [CrossRef] [PubMed]
-
(2010)
Genes Dev
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Tuorto, F.4
Meusburger, M.5
Helm, M.6
Lyko, F.7
-
86
-
-
52949102950
-
A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Huang, B.; Lu, J.; Bystrom, A.S. A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 2008, 14, 2183-2194. [CrossRef] [PubMed]
-
(2008)
RNA
, vol.14
, pp. 2183-2194
-
-
Huang, B.1
Lu, J.2
Bystrom, A.S.3
-
87
-
-
39949083202
-
A decade of surprises for tRNA nuclear-cytoplasmic dynamics
-
[CrossRef] [PubMed]
-
Hopper, A.K.; Shaheen, H.H. A decade of surprises for tRNA nuclear-cytoplasmic dynamics. Trends Cell Biol. 2008, 18, 98-104. [CrossRef] [PubMed]
-
(2008)
Trends Cell Biol
, vol.18
, pp. 98-104
-
-
Hopper, A.K.1
Shaheen, H.H.2
-
88
-
-
34547407396
-
Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation
-
[CrossRef] [PubMed]
-
Shaheen, H.H.; Horetsky, R.L.; Kimball, S.R.; Murthi, A.; Jefferson, L.S.; Hopper, A.K. Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation. Proc. Natl. Acad. Sci. USA 2007, 104, 8845-8850. [CrossRef] [PubMed]
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 8845-8850
-
-
Shaheen, H.H.1
Horetsky, R.L.2
Kimball, S.R.3
Murthi, A.4
Jefferson, L.S.5
Hopper, A.K.6
-
89
-
-
79960582843
-
Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast
-
[CrossRef] [PubMed]
-
Ohira, T.; Suzuki, T. Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast. Proc. Natl. Acad. Sci. USA 2011, 108, 10502-10507. [CrossRef] [PubMed]
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 10502-10507
-
-
Ohira, T.1
Suzuki, T.2
-
90
-
-
33750241652
-
tRNAs promote nuclear import of HIV-1 intracellular reverse transcription complexes
-
[CrossRef] [PubMed]
-
Zaitseva, L.; Myers, R.; Fassati, A. tRNAs promote nuclear import of HIV-1 intracellular reverse transcription complexes. PLoS Biol. 2006, 4, e332. [CrossRef] [PubMed]
-
(2006)
Plos Biol
, vol.4
-
-
Zaitseva, L.1
Myers, R.2
Fassati, A.3
-
91
-
-
84891368395
-
Retrograde transfer RNA nuclear import provides a new level of tRNA quality control in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Kramer, E.B.; Hopper, A.K. Retrograde transfer RNA nuclear import provides a new level of tRNA quality control in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 2013, 110, 21042-21047. [CrossRef] [PubMed]
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 21042-21047
-
-
Kramer, E.B.1
Hopper, A.K.2
-
92
-
-
84926337845
-
Genome-wide investigation of the role of the tRNA nucleus-cytoplasm trafficking pathway in regulation of the yeast s. Cerevisiae transcriptome and proteome
-
Chu, H.Y.; Hopper, A.K. Genome-wide investigation of the role of the tRNA nucleus-cytoplasm trafficking pathway in regulation of the yeast s. Cerevisiae transcriptome and proteome. Mol. Cell Biol. 2013, 2013, 26.
-
(2013)
Mol. Cell Biol
, vol.2013
, pp. 26
-
-
Chu, H.Y.1
Hopper, A.K.2
-
93
-
-
0032510462
-
Identification of a nuclear export receptor for tRNA
-
[CrossRef]
-
Arts, G.J.; Fornerod, M.; Mattaj, I.W. Identification of a nuclear export receptor for tRNA. Curr. Biol. 1998, 8, 305-314. [CrossRef]
-
(1998)
Curr. Biol
, vol.8
, pp. 305-314
-
-
Arts, G.J.1
Fornerod, M.2
Mattaj, I.W.3
-
94
-
-
0031990346
-
Identification of a tRNA-specific nuclear export receptor
-
[CrossRef]
-
Kutay, U.; Lipowsky, G.; Izaurralde, E.; Bischoff, F.R.; Schwarzmaier, P.; Hartmann, E.; Gorlich, D. Identification of a tRNA-specific nuclear export receptor. Mol. Cell 1998, 1, 359-369. [CrossRef]
-
(1998)
Mol. Cell
, vol.1
, pp. 359-369
-
-
Kutay, U.1
Lipowsky, G.2
Izaurralde, E.3
Bischoff, F.R.4
Schwarzmaier, P.5
Hartmann, E.6
Gorlich, D.7
-
95
-
-
0041888473
-
PAUSED encodes the Arabidopsis exportin-t ortholog
-
[CrossRef] [PubMed]
-
Hunter, C.A.; Aukerman, M.J.; Sun, H.; Fokina, M.; Poethig, R.S. PAUSED encodes the Arabidopsis exportin-t ortholog. Plant Physiol. 2003, 132, 2135-2143. [CrossRef] [PubMed]
-
(2003)
Plant Physiol
, vol.132
, pp. 2135-2143
-
-
Hunter, C.A.1
Aukerman, M.J.2
Sun, H.3
Fokina, M.4
Poethig, R.S.5
-
96
-
-
69949094998
-
Structures of the tRNA export factor in the nuclear and cytosolic states
-
[CrossRef] [PubMed]
-
Cook, A.G.; Fukuhara, N.; Jinek, M.; Conti, E. Structures of the tRNA export factor in the nuclear and cytosolic states. Nature 2009, 461, 60-65. [CrossRef] [PubMed]
-
(2009)
Nature
, vol.461
, pp. 60-65
-
-
Cook, A.G.1
Fukuhara, N.2
Jinek, M.3
Conti, E.4
-
97
-
-
0031771756
-
Yeast Los1p has properties of an exportin-like nucleocytoplasmic transport factor for tRNA
-
[CrossRef] [PubMed]
-
Hellmuth, K.; Lau, D.M.; Bischoff, F.R.; Kunzler, M.; Hurt, E.; Simos, G. Yeast Los1p has properties of an exportin-like nucleocytoplasmic transport factor for tRNA. Mol. Cell Biol. 1998, 18, 6374-6386. [CrossRef] [PubMed]
-
(1998)
Mol. Cell Biol
, vol.18
, pp. 6374-6386
-
-
Hellmuth, K.1
Lau, D.M.2
Bischoff, F.R.3
Kunzler, M.4
Hurt, E.5
Simos, G.6
-
98
-
-
0018841174
-
Processing of intervening sequences: A new yeast mutant which fails to excise intervening sequences from precursor tRNAs
-
[CrossRef]
-
Hopper, A.K.; Schultz, L.D.; Shapiro, R.A. Processing of intervening sequences: A new yeast mutant which fails to excise intervening sequences from precursor tRNAs. Cell 1980, 19, 741-751. [CrossRef]
-
(1980)
Cell
, vol.19
, pp. 741-751
-
-
Hopper, A.K.1
Schultz, L.D.2
Shapiro, R.A.3
-
99
-
-
0031739249
-
tRNA nuclear export in Saccharomyces cerevisiae: In situ hybridization analysis
-
[CrossRef] [PubMed]
-
Sarkar, S.; Hopper, A.K. tRNA nuclear export in Saccharomyces cerevisiae: In situ hybridization analysis. Mol. Biol. Cell 1998, 9, 3041-3055. [CrossRef] [PubMed]
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3041-3055
-
-
Sarkar, S.1
Hopper, A.K.2
-
100
-
-
0032535450
-
The role of exportin-t in selective nuclear export of mature tRNAs
-
[CrossRef] [PubMed]
-
Arts, G.J.; Kuersten, S.; Romby, P.; Ehresmann, B.; Mattaj, I.W. The role of exportin-t in selective nuclear export of mature tRNAs. EMBO J. 1998, 17, 7430-7441. [CrossRef] [PubMed]
-
(1998)
EMBO J
, vol.17
, pp. 7430-7441
-
-
Arts, G.J.1
Kuersten, S.2
Romby, P.3
Ehresmann, B.4
Mattaj, I.W.5
-
101
-
-
0032509304
-
Proofreading and aminoacylation of tRNAs before export from the nucleus
-
[CrossRef] [PubMed]
-
Lund, E.; Dahlberg, J.E. Proofreading and aminoacylation of tRNAs before export from the nucleus. Science 1998, 282, 2082-2085. [CrossRef] [PubMed]
-
(1998)
Science
, vol.282
, pp. 2082-2085
-
-
Lund, E.1
Dahlberg, J.E.2
-
102
-
-
0032899187
-
Coordination of tRNA nuclear export with processing of tRNA
-
[CrossRef] [PubMed]
-
Lipowsky, G.; Bischoff, F.R.; Izaurralde, E.; Kutay, U.; Schafer, S.; Gross, H.J.; Beier, H.; Gorlich, D. Coordination of tRNA nuclear export with processing of tRNA. RNA 1999, 5, 539-549. [CrossRef] [PubMed]
-
(1999)
RNA
, vol.5
, pp. 539-549
-
-
Lipowsky, G.1
Bischoff, F.R.2
Izaurralde, E.3
Kutay, U.4
Schafer, S.5
Gross, H.J.6
Beier, H.7
Gorlich, D.8
-
103
-
-
84926375059
-
In vivo biochemical analyses reveal distinct roles of beta-importins and eEF1a in tRNA subcellular traffic
-
[CrossRef] [PubMed]
-
Huang, H.Y.; Hopper, A.K. In vivo biochemical analyses reveal distinct roles of beta-importins and eEF1a in tRNA subcellular traffic. Genes Dev. 2015, 29, 772-783. [CrossRef] [PubMed]
-
(2015)
Genes Dev
, vol.29
, pp. 772-783
-
-
Huang, H.Y.1
Hopper, A.K.2
-
104
-
-
0041467844
-
Possibility of cytoplasmic pre-tRNA splicing: The yeast tRNA splicing endonuclease mainly localizes on the mitochondria. Mol. Biol
-
[CrossRef] [PubMed]
-
Yoshihisa, T.; Yunoki-Esaki, K.; Ohshima, C.; Tanaka, N.; Endo, T. Possibility of cytoplasmic pre-tRNA splicing: The yeast tRNA splicing endonuclease mainly localizes on the mitochondria. Mol. Biol. Cell 2003, 14, 3266-3279. [CrossRef] [PubMed]
-
(2003)
Cell
, vol.14
, pp. 3266-3279
-
-
Yoshihisa, T.1
Yunoki-Esaki, K.2
Ohshima, C.3
Tanaka, N.4
Endo, T.5
-
105
-
-
76649140836
-
Regulation of tRNA bidirectional nuclear-cytoplasmic trafficking in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Murthi, A.; Shaheen, H.H.; Huang, H.Y.; Preston, M.A.; Lai, T.P.; Phizicky, E.M.; Hopper, A.K. Regulation of tRNA bidirectional nuclear-cytoplasmic trafficking in Saccharomyces cerevisiae. Mol. Biol. Cell 2010, 21, 639-649. [CrossRef] [PubMed]
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 639-649
-
-
Murthi, A.1
Shaheen, H.H.2
Huang, H.Y.3
Preston, M.A.4
Lai, T.P.5
Phizicky, E.M.6
Hopper, A.K.7
-
106
-
-
21744453148
-
tRNA actively shuttles between the nucleus and cytosol in yeast
-
[CrossRef] [PubMed]
-
Takano, A.; Endo, T.; Yoshihisa, T. tRNA actively shuttles between the nucleus and cytosol in yeast. Science 2005, 309, 140-142. [CrossRef] [PubMed]
-
(2005)
Science
, vol.309
, pp. 140-142
-
-
Takano, A.1
Endo, T.2
Yoshihisa, T.3
-
107
-
-
84949957312
-
Genome-wide screen uncovers novel pathways for tRNA processing and nuclear-cytoplasmic dynamics
-
[PubMed]
-
Wu, J.; Bao, A.; Chatterjee, K.; Wan, Y.; Hopper, A.K. Genome-wide screen uncovers novel pathways for tRNA processing and nuclear-cytoplasmic dynamics. Genes Dev. 2015, 29, 2633-2644. [PubMed]
-
(2015)
Genes Dev
, vol.29
, pp. 2633-2644
-
-
Wu, J.1
Bao, A.2
Chatterjee, K.3
Wan, Y.4
Hopper, A.K.5
-
108
-
-
23844508130
-
Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Shaheen, H.H.; Hopper, A.K. Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 2005, 102, 11290-11295. [CrossRef] [PubMed]
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11290-11295
-
-
Shaheen, H.H.1
Hopper, A.K.2
-
109
-
-
84926435571
-
Cytosolic Hsp70 and co-chaperones constitute a novel system for tRNA import into the nucleus
-
[CrossRef] [PubMed]
-
Takano, A.; Kajita, T.; Mochizuki, M.; Endo, T.; Yoshihisa, T. Cytosolic Hsp70 and co-chaperones constitute a novel system for tRNA import into the nucleus. eLife 2015, 4. [CrossRef] [PubMed]
-
(2015)
Elife
, pp. 4
-
-
Takano, A.1
Kajita, T.2
Mochizuki, M.3
Endo, T.4
Yoshihisa, T.5
-
110
-
-
0034175551
-
An aminoacylation-dependent nuclear tRNA export pathway in yeast
-
[PubMed]
-
Grosshans, H.; Hurt, E.; Simos, G. An aminoacylation-dependent nuclear tRNA export pathway in yeast. Genes Dev. 2000, 14, 830-840. [PubMed]
-
(2000)
Genes Dev
, vol.14
, pp. 830-840
-
-
Grosshans, H.1
Hurt, E.2
Simos, G.3
-
111
-
-
34250711447
-
Inorganic phosphate deprivation causes tRNA nuclear accumulation via retrograde transport in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Hurto, R.L.; Tong, A.H.; Boone, C.; Hopper, A.K. Inorganic phosphate deprivation causes tRNA nuclear accumulation via retrograde transport in Saccharomyces cerevisiae. Genetics 2007, 176, 841-852. [CrossRef] [PubMed]
-
(2007)
Genetics
, vol.176
, pp. 841-852
-
-
Hurto, R.L.1
Tong, A.H.2
Boone, C.3
Hopper, A.K.4
-
112
-
-
34250789855
-
Rapid and reversible nuclear accumulation of cytoplasmic tRNA in response to nutrient availability
-
[CrossRef] [PubMed]
-
Whitney, M.L.; Hurto, R.L.; Shaheen, H.H.; Hopper, A.K. Rapid and reversible nuclear accumulation of cytoplasmic tRNA in response to nutrient availability. Mol. Biol. Cell 2007, 18, 2678-2686. [CrossRef] [PubMed]
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 2678-2686
-
-
Whitney, M.L.1
Hurto, R.L.2
Shaheen, H.H.3
Hopper, A.K.4
-
113
-
-
84907222973
-
Separate responses of karyopherins to glucose and amino acid availability regulate nucleocytoplasmic transport
-
[CrossRef] [PubMed]
-
Huang, H.Y.; Hopper, A.K. Separate responses of karyopherins to glucose and amino acid availability regulate nucleocytoplasmic transport. Mol. Biol. Cell 2014, 25, 2840-2852. [CrossRef] [PubMed]
-
(2014)
Mol. Biol. Cell
, vol.25
, pp. 2840-2852
-
-
Huang, H.Y.1
Hopper, A.K.2
-
114
-
-
36248953763
-
Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint
-
[CrossRef] [PubMed]
-
Ghavidel, A.; Kislinger, T.; Pogoutse, O.; Sopko, R.; Jurisica, I.; Emili, A. Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint. Cell 2007, 131, 915-926. [CrossRef] [PubMed]
-
(2007)
Cell
, vol.131
, pp. 915-926
-
-
Ghavidel, A.1
Kislinger, T.2
Pogoutse, O.3
Sopko, R.4
Jurisica, I.5
Emili, A.6
-
115
-
-
80655144725
-
Maf1 protein, repressor of RNA polymerase III, indirectly affects tRNA processing
-
[CrossRef] [PubMed]
-
Karkusiewicz, I.; Turowski, T.W.; Graczyk, D.; Towpik, J.; Dhungel, N.; Hopper, A.K.; Boguta, M. Maf1 protein, repressor of RNA polymerase III, indirectly affects tRNA processing. J. Biol. Chem. 2011, 286, 39478-39488. [CrossRef] [PubMed]
-
(2011)
J. Biol. Chem
, vol.286
, pp. 39478-39488
-
-
Karkusiewicz, I.1
Turowski, T.W.2
Graczyk, D.3
Towpik, J.4
Dhungel, N.5
Hopper, A.K.6
Boguta, M.7
-
116
-
-
84893344050
-
Protein kinase a is part of a mechanism that regulates nuclear reimport of the nuclear tRNA export receptors Los1p and Msn5p
-
[CrossRef] [PubMed]
-
Pierce, J.B.; van der Merwe, G.; Mangroo, D. Protein kinase a is part of a mechanism that regulates nuclear reimport of the nuclear tRNA export receptors Los1p and Msn5p. Eukaryot. Cell 2014, 13, 209-230. [CrossRef] [PubMed]
-
(2014)
Eukaryot. Cell
, vol.13
, pp. 209-230
-
-
Pierce, J.B.1
Van Der Merwe, G.2
Mangroo, D.3
-
117
-
-
33749170007
-
The carrier Msn5p/Kap142p promotes nuclear export of theHsp70 Ssa4p and relocates in response to stress
-
[CrossRef] [PubMed]
-
Quan, X.; Tsoulos, P.; Kuritzky, A.; Zhang, R.; Stochaj, U. The carrier Msn5p/Kap142p promotes nuclear export of theHsp70 Ssa4p and relocates in response to stress. Mol. Microbiol. 2006, 62, 592-609. [CrossRef] [PubMed]
-
(2006)
Mol. Microbiol
, vol.62
, pp. 592-609
-
-
Quan, X.1
Tsoulos, P.2
Kuritzky, A.3
Zhang, R.4
Stochaj, U.5
-
118
-
-
34250165409
-
The localization of nuclear exporters of the importin-beta family is regulated by Snf1 kinase, nutrient supply and stress
-
[CrossRef] [PubMed]
-
Quan, X.; Yu, J.; Bussey, H.; Stochaj, U. The localization of nuclear exporters of the importin-beta family is regulated by Snf1 kinase, nutrient supply and stress. Biochim. Biophys. Acta 2007, 1773, 1052-1061. [CrossRef] [PubMed]
-
(2007)
Biochim. Biophys. Acta
, vol.1773
, pp. 1052-1061
-
-
Quan, X.1
Yu, J.2
Bussey, H.3
Stochaj, U.4
-
119
-
-
0037117614
-
Los1p-independent pathway for nuclear export of intronless tRNAs in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Feng, W.; Hopper, A.K. A Los1p-independent pathway for nuclear export of intronless tRNAs in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 2002, 99, 5412-5417. [CrossRef] [PubMed]
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5412-5417
-
-
Feng, W.1
Hopper, A.2
-
120
-
-
0034767664
-
Role of nuclear pools of aminoacyl-tRNA synthetases in tRNA nuclear export
-
[CrossRef] [PubMed]
-
Azad, A.K.; Stanford, D.R.; Sarkar, S.; Hopper, A.K. Role of nuclear pools of aminoacyl-tRNA synthetases in tRNA nuclear export. Mol. Biol. Cell 2001, 12, 1381-1392. [CrossRef] [PubMed]
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 1381-1392
-
-
Azad, A.K.1
Stanford, D.R.2
Sarkar, S.3
Hopper, A.K.4
-
121
-
-
0033431040
-
Nuclear tRNA aminoacylation and its role in nuclear export of endogenous tRNAs in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Sarkar, S.; Azad, A.K.; Hopper, A.K. Nuclear tRNA aminoacylation and its role in nuclear export of endogenous tRNAs in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 1999, 96, 14366-14371. [CrossRef] [PubMed]
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14366-14371
-
-
Sarkar, S.1
Azad, A.K.2
Hopper, A.K.3
-
122
-
-
24344499742
-
Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAhis with additional m(5)C
-
[CrossRef] [PubMed]
-
Gu, W.; Hurto, R.L.; Hopper, A.K.; Grayhack, E.J.; Phizicky, E.M. Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAhis with additional m(5)C. Mol. Cell Biol. 2005, 25, 8191-8201. [CrossRef] [PubMed]
-
(2005)
Mol. Cell Biol
, vol.25
, pp. 8191-8201
-
-
Gu, W.1
Hurto, R.L.2
Hopper, A.K.3
Grayhack, E.J.4
Phizicky, E.M.5
-
123
-
-
52949145277
-
tRNA cleavage is a conserved response to oxidative stress in eukaryotes
-
[CrossRef] [PubMed]
-
Thompson, D.M.; Lu, C.; Green, P.J.; Parker, R. tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 2008, 14, 2095-2103. [CrossRef] [PubMed]
-
(2008)
RNA
, vol.14
, pp. 2095-2103
-
-
Thompson, D.M.1
Lu, C.2
Green, P.J.3
Parker, R.4
-
124
-
-
0033974354
-
Anticodon nucleases
-
[CrossRef]
-
Kaufmann, G. Anticodon nucleases. Trends Biochem. Sci. 2000, 25, 70-74. [CrossRef]
-
(2000)
Trends Biochem. Sci
, vol.25
, pp. 70-74
-
-
Kaufmann, G.1
-
125
-
-
0036589213
-
The modes of action of colicins E5 and D, and related cytotoxic tRNAses
-
[CrossRef]
-
Masaki, H.; Ogawa, T. The modes of action of colicins E5 and D, and related cytotoxic tRNAses. Biochimie 2002, 84, 433-438. [CrossRef]
-
(2002)
Biochimie
, vol.84
, pp. 433-438
-
-
Masaki, H.1
Ogawa, T.2
-
126
-
-
84910673620
-
tRNA fragments in human health and disease
-
[CrossRef] [PubMed]
-
Anderson, P.; Ivanov, P. tRNA fragments in human health and disease. FEBS Lett. 2014, 588, 4297-4304. [CrossRef] [PubMed]
-
(2014)
FEBS Lett
, vol.588
, pp. 4297-4304
-
-
Anderson, P.1
Ivanov, P.2
-
127
-
-
84893147804
-
Slicing tRNAs to boost functional ncRNA diversity
-
[CrossRef] [PubMed]
-
Gebetsberger, J.; Polacek, N. Slicing tRNAs to boost functional ncRNA diversity. RNA Biol. 2013, 10, 1798-1806. [CrossRef] [PubMed]
-
(2013)
RNA Biol
, vol.10
, pp. 1798-1806
-
-
Gebetsberger, J.1
Polacek, N.2
-
128
-
-
67650604265
-
Stressing out over tRNA cleavage
-
[CrossRef] [PubMed]
-
Thompson, D.M.; Parker, R. Stressing out over tRNA cleavage. Cell 2009, 138, 215-219. [CrossRef] [PubMed]
-
(2009)
Cell
, vol.138
, pp. 215-219
-
-
Thompson, D.M.1
Parker, R.2
-
129
-
-
72749089855
-
A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
-
[CrossRef] [PubMed]
-
Lee, Y.S.; Shibata, Y.; Malhotra, A.; Dutta, A. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 2009, 23, 2639-2649. [CrossRef] [PubMed]
-
(2009)
Genes Dev
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
130
-
-
58149498297
-
Stress induces tRNA cleavage by angiogenin in mammalian cells
-
[CrossRef] [PubMed]
-
Fu, H.; Feng, J.; Liu, Q.; Sun, F.; Tie, Y.; Zhu, J.; Xing, R.; Sun, Z.; Zheng, X. Stress induces tRNA cleavage by angiogenin in mammalian cells. FEBS Lett. 2009, 583, 437-442. [CrossRef] [PubMed]
-
(2009)
FEBS Lett
, vol.583
, pp. 437-442
-
-
Fu, H.1
Feng, J.2
Liu, Q.3
Sun, F.4
Tie, Y.5
Zhu, J.6
Xing, R.7
Sun, Z.8
Zheng, X.9
-
131
-
-
65249152479
-
The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae
-
[CrossRef] [PubMed]
-
Thompson, D.M.; Parker, R. The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae. J. Cell Biol. 2009, 185, 43-50. [CrossRef] [PubMed]
-
(2009)
J. Cell Biol
, vol.185
, pp. 43-50
-
-
Thompson, D.M.1
Parker, R.2
-
132
-
-
80051713296
-
Angiogenin-induced tRNA fragments inhibit translation initiation. Mol
-
[CrossRef] [PubMed]
-
Ivanov, P.; Emara, M.M.; Villen, J.; Gygi, S.P.; Anderson, P. Angiogenin-induced tRNA fragments inhibit translation initiation. Mol. Cell 2011, 43, 613-623. [CrossRef] [PubMed]
-
(2011)
Cell
, vol.43
, pp. 613-623
-
-
Ivanov, P.1
Emara, M.M.2
Villen, J.3
Gygi, S.P.4
Anderson, P.5
-
133
-
-
84919934354
-
G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments
-
[CrossRef] [PubMed]
-
Ivanov, P.; O'Day, E.; Emara, M.M.; Wagner, G.; Lieberman, J.; Anderson, P. G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments. Proc. Natl. Acad. Sci. USA 2014, 111, 18201-18206. [CrossRef] [PubMed]
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 18201-18206
-
-
Ivanov, P.1
O'day, E.2
Emara, M.M.3
Wagner, G.4
Lieberman, J.5
Anderson, P.6
-
134
-
-
84901766882
-
Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress
-
[CrossRef] [PubMed]
-
Saikia, M.; Jobava, R.; Parisien, M.; Putnam, A.; Krokowski, D.; Gao, X.H.; Guan, B.J.; Yuan, Y.; Jankowsky, E.; Feng, Z.; et al. Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress. Mol. Cell Biol. 2014, 34, 2450-2463. [CrossRef] [PubMed]
-
(2014)
Mol. Cell Biol
, vol.34
, pp. 2450-2463
-
-
Saikia, M.1
Jobava, R.2
Parisien, M.3
Putnam, A.4
Krokowski, D.5
Gao, X.H.6
Guan, B.J.7
Yuan, Y.8
Jankowsky, E.9
Feng, Z.10
-
135
-
-
84857692673
-
Transfer RNA-derived fragments: Origins, processing, and functions
-
[CrossRef] [PubMed]
-
Sobala, A.; Hutvagner, G. Transfer RNA-derived fragments: Origins, processing, and functions. Wiley Interdiscip. Rev. RNA 2011, 2, 853-862. [CrossRef] [PubMed]
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 853-862
-
-
Sobala, A.1
Hutvagner, G.2
-
136
-
-
84941358900
-
Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies
-
[CrossRef] [PubMed]
-
Telonis, A.G.; Loher, P.; Honda, S.; Jing, Y.; Palazzo, J.; Kirino, Y.; Rigoutsos, I. Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies. Oncotarget 2015, 6, 24797-24822. [CrossRef] [PubMed]
-
(2015)
Oncotarget
, vol.6
, pp. 24797-24822
-
-
Telonis, A.G.1
Loher, P.2
Honda, S.3
Jing, Y.4
Palazzo, J.5
Kirino, Y.6
Rigoutsos, I.7
-
137
-
-
84875623194
-
Clp1 links tRNA metabolism to progressive motor-neuron loss
-
[CrossRef] [PubMed]
-
Hanada, T.; Weitzer, S.; Mair, B.; Bernreuther, C.; Wainger, B.J.; Ichida, J.; Hanada, R.; Orthofer, M.; Cronin, S.J.; Komnenovic, V.; et al. Clp1 links tRNA metabolism to progressive motor-neuron loss. Nature 2013, 495, 474-480. [CrossRef] [PubMed]
-
(2013)
Nature
, vol.495
, pp. 474-480
-
-
Hanada, T.1
Weitzer, S.2
Mair, B.3
Bernreuther, C.4
Wainger, B.J.5
Ichida, J.6
Hanada, R.7
Orthofer, M.8
Cronin, S.J.9
Komnenovic, V.10
-
138
-
-
84896859718
-
Argonaute-bound small RNAs from promoter-proximal RNA polymerase II
-
[CrossRef] [PubMed]
-
Zamudio, J.R.; Kelly, T.J.; Sharp, P.A. Argonaute-bound small RNAs from promoter-proximal RNA polymerase II. Cell 2014, 156, 920-934. [CrossRef] [PubMed]
-
(2014)
Cell
, vol.156
, pp. 920-934
-
-
Zamudio, J.R.1
Kelly, T.J.2
Sharp, P.A.3
-
139
-
-
84872784032
-
tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii
-
[CrossRef] [PubMed]
-
Gebetsberger, J.; Zywicki, M.; Kunzi, A.; Polacek, N. tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii. Archaea 2012, 2012, 260909. [CrossRef] [PubMed]
-
(2012)
Archaea
, vol.2012
, pp. 260909
-
-
Gebetsberger, J.1
Zywicki, M.2
Kunzi, A.3
Polacek, N.4
-
140
-
-
66149125192
-
The phloem-delivered RNA pool contains small noncoding RNAs and interferes with translation
-
[CrossRef] [PubMed]
-
Zhang, S.; Sun, L.; Kragler, F. The phloem-delivered RNA pool contains small noncoding RNAs and interferes with translation. Plant Physiol. 2009, 150, 378-387. [CrossRef] [PubMed]
-
(2009)
Plant Physiol
, vol.150
, pp. 378-387
-
-
Zhang, S.1
Sun, L.2
Kragler, F.3
-
141
-
-
84961289482
-
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
-
[CrossRef] [PubMed]
-
Sharma, U.; Conine, C.C.; Shea, J.M.; Boskovic, A.; Derr, A.G.; Bing, X.Y.; Belleannee, C.; Kucukural, A.; Serra, R.W.; Sun, F.; et al. Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals. Science 2016, 351, 391-396. [CrossRef] [PubMed]
-
(2016)
Science
, vol.351
, pp. 391-396
-
-
Sharma, U.1
Conine, C.C.2
Shea, J.M.3
Boskovic, A.4
Derr, A.G.5
Bing, X.Y.6
Belleannee, C.7
Kucukural, A.8
Serra, R.W.9
Sun, F.10
-
142
-
-
84955486679
-
Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder
-
[CrossRef] [PubMed]
-
Chen, Q.; Yan, M.; Cao, Z.; Li, X.; Zhang, Y.; Shi, J.; Feng, G.H.; Peng, H.; Zhang, X.; Zhang, Y.; et al. Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder. Science 2016, 351, 397-400. [CrossRef] [PubMed]
-
(2016)
Science
, vol.351
, pp. 397-400
-
-
Chen, Q.1
Yan, M.2
Cao, Z.3
Li, X.4
Zhang, Y.5
Shi, J.6
Feng, G.H.7
Peng, H.8
Zhang, X.9
Zhang, Y.10
|