-
1
-
-
29544450711
-
Rapid tRNA decay can result from lack of non-essential modifications
-
Alexandrov A, Chernyakov I, Gu W, Hiley SL, Hughes TR, Grayhack EJ, Phizicky EM. 2006. Rapid tRNA decay can result from lack of non-essential modifications. Mol Cell 21: 87-96.
-
(2006)
Mol Cell
, vol.21
, pp. 87-96
-
-
Alexandrov, A.1
Chernyakov, I.2
Gu, W.3
Hiley, S.L.4
Hughes, T.R.5
Grayhack, E.J.6
Phizicky, E.M.7
-
2
-
-
0024415902
-
Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria
-
Andachi Y, Yamao F, Muto A, Osawa S. 1989. Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria. J Mol Biol 209: 37-54.
-
(1989)
J Mol Biol
, vol.209
, pp. 37-54
-
-
Andachi, Y.1
Yamao, F.2
Muto, A.3
Osawa, S.4
-
3
-
-
0028239805
-
Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
-
Arnez JG, Steitz TA. 1994. Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure. Biochemistry 33: 7560-7567.
-
(1994)
Biochemistry
, vol.33
, pp. 7560-7567
-
-
Arnez, J.G.1
Steitz, T.A.2
-
4
-
-
0033600832
-
Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes
-
Auffinger P, Westhof E. 1999. Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes. J Mol Biol 292: 467-483.
-
(1999)
J Mol Biol
, vol.292
, pp. 467-483
-
-
Auffinger, P.1
Westhof, E.2
-
5
-
-
0014630895
-
Synthesis of 2-thio-5-carboxymethyluridine methyl ester: A component of transfer RNA
-
Baczynskyj L, Biemann K, Fleysher MH, Hall RH. 1969. Synthesis of 2-thio-5-carboxymethyluridine methyl ester: a component of transfer RNA. Can J Biochem 47: 1202-1203.
-
(1969)
Can J Biochem
, vol.47
, pp. 1202-1203
-
-
Baczynskyj, L.1
Biemann, K.2
Fleysher, M.H.3
Hall, R.H.4
-
6
-
-
11344272208
-
An extended signal involved in eukaryotic-1 frameshifting operates through modification of the E site tRNA
-
Bekaert M, Rousset JP. 2005. An extended signal involved in eukaryotic-1 frameshifting operates through modification of the E site tRNA. Mol Cell 17: 61-68.
-
(2005)
Mol Cell
, vol.17
, pp. 61-68
-
-
Bekaert, M.1
Rousset, J.P.2
-
7
-
-
0035863196
-
A primordial tRNA modification required for the evolution of life?
-
Björk GR, Jacobsson K, Nilsson K, Johansson MJ, Byström AS, Persson OP. 2001. A primordial tRNA modification required for the evolution of life? EMBO J 20: 231-239.
-
(2001)
EMBO J
, vol.20
, pp. 231-239
-
-
Björk, G.R.1
Jacobsson, K.2
Nilsson, K.3
Johansson, M.J.4
Byström, A.S.5
Persson, O.P.6
-
9
-
-
79959311751
-
Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii
-
Blaby IK, Majumder M, Chatterjee K, Jana S, Grosjean H, de Crécy-Lagard V, Gupta R. 2011. Pseudouridine formation in archaeal RNAs: the case of Haloferax volcanii. RNA 17: 1367-1380.
-
(2011)
RNA
, vol.17
, pp. 1367-1380
-
-
Blaby, I.K.1
Majumder, M.2
Chatterjee, K.3
Jana, S.4
Grosjean, H.5
De Crécy-Lagard, V.6
Gupta, R.7
-
10
-
-
0025969199
-
A gene tightly linked to CEN6 is important for growth of Saccharomyces cerevisiae
-
Carbone ML, Solinas M, Sora S, Panzeri L. 1991. A gene tightly linked to CEN6 is important for growth of Saccharomyces cerevisiae. Curr Genet 19: 1-8.
-
(1991)
Curr Genet
, vol.19
, pp. 1-8
-
-
Carbone, M.L.1
Solinas, M.2
Sora, S.3
Panzeri, L.4
-
11
-
-
78650683942
-
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress
-
Chan CT, Dyavaiah M, DeMott MS, Taghizadeh K, Dedon PC, Begley TJ. 2010. A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress. PLoS Genet 6: e1001247.
-
(2010)
PLoS Genet
, vol.6
-
-
Chan, C.T.1
Dyavaiah, M.2
DeMott, M.S.3
Taghizadeh, K.4
Dedon, P.C.5
Begley, T.J.6
-
12
-
-
84864828979
-
Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins
-
Chan CT, Pang YL, Deng W, Babu IR, Dyavaiah M, Begley TJ, Dedon PC. 2012. Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins. Nat Commun 3: 937.
-
(2012)
Nat Commun
, vol.3
, pp. 937
-
-
Chan, C.T.1
Pang, Y.L.2
Deng, W.3
Babu, I.R.4
Dyavaiah, M.5
Begley, T.J.6
Dedon, P.C.7
-
13
-
-
0015137696
-
Histidine regulation in Salmonella typhimurium. VIII. Mutations of the hisT gene
-
Chang GW, Roth JR, Ames BN. 1971. Histidine regulation in Salmonella typhimurium. VIII. Mutations of the hisT gene. J Bacteriol 108: 410-414.
-
(1971)
J Bacteriol
, vol.108
, pp. 410-414
-
-
Chang, G.W.1
Roth, J.R.2
Ames, B.N.3
-
14
-
-
0033935223
-
Pseudouridine in RNA: What, where, how, and why
-
Charette M, Gray MW. 2000. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49: 341-351.
-
(2000)
IUBMB Life
, vol.49
, pp. 341-351
-
-
Charette, M.1
Gray, M.W.2
-
15
-
-
80053461006
-
Elongator complex influences telomeric gene silencing and DNA damage response by its role in wobble uridine tRNA modification
-
Chen C, Huang B, Eliasson M, Rydén P, Byström AS. 2011. Elongator complex influences telomeric gene silencing and DNA damage response by its role in wobble uridine tRNA modification. PLoS Genet 7: e1002258.
-
(2011)
PLoS Genet
, vol.7
-
-
Chen, C.1
Huang, B.2
Eliasson, M.3
Rydén, P.4
Byström, A.S.5
-
16
-
-
44149119097
-
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1
-
Chernyakov I, Whipple JM, Kotelawala L, Grayhack EJ, Phizicky EM. 2008. Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1. Genes Dev 22: 1369-1380.
-
(2008)
Genes Dev
, vol.22
, pp. 1369-1380
-
-
Chernyakov, I.1
Whipple, J.M.2
Kotelawala, L.3
Grayhack, E.J.4
Phizicky, E.M.5
-
17
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, et al. 2010. The genetic landscape of a cell. Science 327: 425-431.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.8
Toufighi, K.9
Mostafavi, S.10
-
18
-
-
0029566314
-
Stabilization of RNA stacking by pseudouridine
-
Davis DR. 1995. Stabilization of RNA stacking by pseudouridine. Nucleic Acids Res 23: 5020-5026.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 5020-5026
-
-
Davis, D.R.1
-
19
-
-
84885926803
-
Decoding in Candidatus Riesia pediculicola, close to a minimal tRNA modification set?
-
de Crécy-Lagard V, Marck C, Grosjean H. 2012. Decoding in Candidatus Riesia pediculicola, close to a minimal tRNA modification set? Trends Cell Mol Biol 7: 11-34.
-
(2012)
Trends Cell Mol Biol
, vol.7
, pp. 11-34
-
-
De Crécy-Lagard, V.1
Marck, C.2
Grosjean, H.3
-
20
-
-
84869750609
-
RNA-ID, a highly sensitive and robust method to identify cis-regulatory sequences using superfolder GFP and a fluorescence-based assay
-
Dean KM, Grayhack EJ. 2012. RNA-ID, a highly sensitive and robust method to identify cis-regulatory sequences using superfolder GFP and a fluorescence-based assay. RNA 18: 2335-2344.
-
(2012)
RNA
, vol.18
, pp. 2335-2344
-
-
Dean, K.M.1
Grayhack, E.J.2
-
21
-
-
84866622511
-
The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications
-
Dewe JM, Whipple JM, Chernyakov I, Jaramillo LN, Phizicky EM. 2012. The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications. RNA 18: 1886-1896.
-
(2012)
RNA
, vol.18
, pp. 1886-1896
-
-
Dewe, J.M.1
Whipple, J.M.2
Chernyakov, I.3
Jaramillo, L.N.4
Phizicky, E.M.5
-
22
-
-
0023084849
-
Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae
-
Dihanich ME, Najarian D, Clark R, Gillman EC, Martin NC, Hopper AK. 1987. Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae. Mol Cell Biol 7: 177-184.
-
(1987)
Mol Cell Biol
, vol.7
, pp. 177-184
-
-
Dihanich, M.E.1
Najarian, D.2
Clark, R.3
Gillman, E.C.4
Martin, N.C.5
Hopper, A.K.6
-
23
-
-
0033534387
-
Lys,3 by an A+-C base-pair and by pseudouridine
-
Lys,3 by an A+-C base-pair and by pseudouridine. J Mol Biol 285: 115-131.
-
(1999)
J Mol Biol
, vol.285
, pp. 115-131
-
-
Durant, P.C.1
Davis, D.R.2
-
24
-
-
79952281325
-
A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification
-
El Yacoubi B, Hatin I, Deutsch C, Kahveci T, Rousset JP, Iwata-Reuyl D, Murzin AG, de Crécy-Lagard V. 2011. A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification. EMBO J 30: 882-893.
-
(2011)
EMBO J
, vol.30
, pp. 882-893
-
-
El Yacoubi, B.1
Hatin, I.2
Deutsch, C.3
Kahveci, T.4
Rousset, J.P.5
Iwata-Reuyl, D.6
Murzin, A.G.7
De Crécy-Lagard, V.8
-
25
-
-
33749078546
-
Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis
-
Esberg A, Huang B, Johansson MJ, Byström AS. 2006. Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis. Mol Cell 24: 139-148.
-
(2006)
Mol Cell
, vol.24
, pp. 139-148
-
-
Esberg, A.1
Huang, B.2
Johansson, M.J.3
Byström, A.S.4
-
26
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
27
-
-
0033527628
-
An adenosine deaminase that generates inosine at the wobble position of tRNAs
-
Gerber AP, KellerW. 1999. An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science 286: 1146-1149.
-
(1999)
Science
, vol.286
, pp. 1146-1149
-
-
Gerber, A.P.1
Keller, W.2
-
28
-
-
0017100329
-
Structural analysis of O2'-methyl-5-carbamoylmethyluridine, a newly discovered constituent of yeast transfer RNA
-
Gray MW. 1976. Structural analysis of O2'-methyl-5-carbamoylmethyluridine, a newly discovered constituent of yeast transfer RNA. Biochemistry 15: 3046-3051.
-
(1976)
Biochemistry
, vol.15
, pp. 3046-3051
-
-
Gray, M.W.1
-
29
-
-
41649102484
-
Evidence that tRNA modifying enzymes are important in vivo targets for 5-fluorouracil in yeast
-
Gustavsson M, Ronne H. 2008. Evidence that tRNA modifying enzymes are important in vivo targets for 5-fluorouracil in yeast. RNA 14: 666-674.
-
(2008)
RNA
, vol.14
, pp. 666-674
-
-
Gustavsson, M.1
Ronne, H.2
-
30
-
-
84866610711
-
Phe anticodon loop
-
Phe anticodon loop. RNA 18: 1921-1933.
-
(2012)
RNA
, vol.18
, pp. 1921-1933
-
-
Guy, M.P.1
Podyma, B.M.2
Preston, M.A.3
Shaheen, H.H.4
Krivos, K.L.5
Limbach, P.A.6
Hopper, A.K.7
Phizicky, E.M.8
-
31
-
-
84905228696
-
Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis
-
Guy MP, Young DL, Payea MJ, Zhang X, Kon Y, Dean KM, Grayhack EJ, Mathews DH, Fields S, Phizicky EM. 2014. Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis. Genes Dev 28: 1721-1732.
-
(2014)
Genes Dev
, vol.28
, pp. 1721-1732
-
-
Guy, M.P.1
Young, D.L.2
Payea, M.J.3
Zhang, X.4
Kon, Y.5
Dean, K.M.6
Grayhack, E.J.7
Mathews, D.H.8
Fields, S.9
Phizicky, E.M.10
-
33
-
-
15444371415
-
An early step in wobble uridine tRNA modification requires the Elongator complex
-
Huang B, Johansson MJ, Byström AS. 2005. An early step in wobble uridine tRNA modification requires the Elongator complex. RNA 11: 424-436.
-
(2005)
RNA
, vol.11
, pp. 424-436
-
-
Huang, B.1
Johansson, M.J.2
Byström, A.S.3
-
34
-
-
52949102950
-
A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxy-carbonylmethyl-2-thiouridine in Saccharomyces cerevisiae
-
Huang B, Lu J, Byström AS. 2008. A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxy-carbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14: 2183-2194.
-
(2008)
RNA
, vol.14
, pp. 2183-2194
-
-
Huang, B.1
Lu, J.2
Byström, A.S.3
-
35
-
-
34247199024
-
How U38, 39, and 40 of many tRNAs become the targets for pseudouridylation by TruA
-
Hur S, Stroud RM. 2007. How U38, 39, and 40 of many tRNAs become the targets for pseudouridylation by TruA. Mol Cell 26: 189-203.
-
(2007)
Mol Cell
, vol.26
, pp. 189-203
-
-
Hur, S.1
Stroud, R.M.2
-
36
-
-
0035175582
-
Kluyveromyces lactis zymocin mode of action is linked to RNA polymerase II function via Elongator
-
Jablonowski D, Frohloff F, Fichtner L, Stark MJ, Schaffrath R. 2001. Kluyveromyces lactis zymocin mode of action is linked to RNA polymerase II function via Elongator. Mol Microbiol 42: 1095-1105.
-
(2001)
Mol Microbiol
, vol.42
, pp. 1095-1105
-
-
Jablonowski, D.1
Frohloff, F.2
Fichtner, L.3
Stark, M.J.4
Schaffrath, R.5
-
37
-
-
0037407933
-
Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9
-
Jackman JE, Montange RK, Malik HS, Phizicky EM. 2003. Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9. RNA 9: 574-585.
-
(2003)
RNA
, vol.9
, pp. 574-585
-
-
Jackman, J.E.1
Montange, R.K.2
Malik, H.S.3
Phizicky, E.M.4
-
38
-
-
43249104840
-
Eukaryotic wobble uridine modifications promote a functionally redundant decoding system
-
Johansson MJ, Esberg A, Huang B, Björk GR, Bystrom AS. 2008. Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28: 3301-3312.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 3301-3312
-
-
Johansson, M.J.1
Esberg, A.2
Huang, B.3
Björk, G.R.4
Bystrom, A.S.5
-
39
-
-
40149109321
-
A systematic library for comprehensive overexpression screens in Saccharomyces cerevisiae
-
Jones GM, Stalker J, Humphray S, West A, Cox T, Rogers J, Dunham I, Prelich G. 2008. A systematic library for comprehensive overexpression screens in Saccharomyces cerevisiae. Nat Methods 5: 239-241.
-
(2008)
Nat Methods
, vol.5
, pp. 239-241
-
-
Jones, G.M.1
Stalker, J.2
Humphray, S.3
West, A.4
Cox, T.5
Rogers, J.6
Dunham, I.7
Prelich, G.8
-
40
-
-
58149191272
-
tRNAdb 2009: Compilation of tRNA sequences and tRNA genes
-
Juhling F, Mörl M, Hartmann RK, Sprinzl M, Stadler PF, Pütz J. 2009. tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Res 37: D159-D162.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D159-D162
-
-
Juhling, F.1
Mörl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Pütz, J.6
-
42
-
-
34249793205
-
Evidence for an adaptation mechanism of mitochondrial translation via tRNA import from the cytosol
-
Kamenski P, Kolesnikova O, Jubenot V, Entelis N, Krasheninnikov IA, Martin RP, Tarassov I. 2007. Evidence for an adaptation mechanism of mitochondrial translation via tRNA import from the cytosol. Mol Cell 26: 625-637.
-
(2007)
Mol Cell
, vol.26
, pp. 625-637
-
-
Kamenski, P.1
Kolesnikova, O.2
Jubenot, V.3
Entelis, N.4
Krasheninnikov, I.A.5
Martin, R.P.6
Tarassov, I.7
-
43
-
-
84872395280
-
A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation
-
Kemp AJ, Betney R, Ciandrini L, Schwenger AC, Romano MC, Stansfield I. 2013. A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation. Mol Microbiol 87: 284-300.
-
(2013)
Mol Microbiol
, vol.87
, pp. 284-300
-
-
Kemp, A.J.1
Betney, R.2
Ciandrini, L.3
Schwenger, A.C.4
Romano, M.C.5
Stansfield, I.6
-
44
-
-
0029945504
-
Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
-
Koonin EV. 1996. Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res 24: 2411-2415.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2411-2415
-
-
Koonin, E.V.1
-
45
-
-
0035171624
-
Characterization of a six-subunit holo-elongator complex required for the regulated expression of a group of genes in Saccharomyces cerevisiae
-
Krogan NJ, Greenblatt JF. 2001. Characterization of a six-subunit holo-elongator complex required for the regulated expression of a group of genes in Saccharomyces cerevisiae. Mol Cell Biol 21: 8203-8212.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 8203-8212
-
-
Krogan, N.J.1
Greenblatt, J.F.2
-
47
-
-
0037163022
-
Lack of pseudouridine 38/39 in the anticodon arm of yeast cytoplasmic tRNA decreases in vivo recoding efficiency
-
Lecointe F, Namy O, Hatin I, Simos G, Rousset JP, Grosjean H. 2002. Lack of pseudouridine 38/39 in the anticodon arm of yeast cytoplasmic tRNA decreases in vivo recoding efficiency. J Biol Chem 277: 30445-30453.
-
(2002)
J Biol Chem
, vol.277
, pp. 30445-30453
-
-
Lecointe, F.1
Namy, O.2
Hatin, I.3
Simos, G.4
Rousset, J.P.5
Grosjean, H.6
-
48
-
-
78649656286
-
Control of translation efficiency in yeast by codon-anticodon interactions
-
Letzring DP, Dean KM, Grayhack EJ. 2010. Control of translation efficiency in yeast by codon-anticodon interactions. RNA 16: 2516-2528.
-
(2010)
RNA
, vol.16
, pp. 2516-2528
-
-
Letzring, D.P.1
Dean, K.M.2
Grayhack, E.J.3
-
49
-
-
73349133725
-
The elongator complex interacts with PCNA and modulates transcriptional silencing and sensitivity to DNA damage agents
-
Li Q, Fazly AM, Zhou H, Huang S, Zhang Z, Stillman B. 2009. The elongator complex interacts with PCNA and modulates transcriptional silencing and sensitivity to DNA damage agents. PLoS Genet 5: e1000684.
-
(2009)
PLoS Genet
, vol.5
-
-
Li, Q.1
Fazly, A.M.2
Zhou, H.3
Huang, S.4
Zhang, Z.5
Stillman, B.6
-
50
-
-
78751476913
-
Pseudouridine formation, the most common transglycosylation in RNA
-
(ed. Grosjean H), Landes Bioscience, Austin, TX
-
Mueller EG, Ferre-D'Amare AR. 2009. Pseudouridine formation, the most common transglycosylation in RNA. In DNA and RNA modification enzymes: structure mechanism, function and evolution (ed. Grosjean H), pp. 363-376. Landes Bioscience, Austin, TX.
-
(2009)
DNA and RNA Modification Enzymes: Structure Mechanism, Function and Evolution
, pp. 363-376
-
-
Mueller, E.G.1
Ferre-D'Amare, A.R.2
-
51
-
-
0023734317
-
Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
-
Muramatsu T, Nishikawa K, Nemoto F, Kuchino Y, Nishimura S, Miyazawa T, Yokoyama S. 1988. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336: 179-181.
-
(1988)
Nature
, vol.336
, pp. 179-181
-
-
Muramatsu, T.1
Nishikawa, K.2
Nemoto, F.3
Kuchino, Y.4
Nishimura, S.5
Miyazawa, T.6
Yokoyama, S.7
-
53
-
-
0032555213
-
A yeast glutamine tRNA signals nitrogen status for regulation of dimorphic growth and sporulation
-
Murray LE, Rowley N, Dawes IW, Johnston GC, Singer RA. 1998. A yeast glutamine tRNA signals nitrogen status for regulation of dimorphic growth and sporulation. Proc Natl Acad Sci 95: 8619-8624.
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 8619-8624
-
-
Murray, L.E.1
Rowley, N.2
Dawes, I.W.3
Johnston, G.C.4
Singer, R.A.5
-
54
-
-
76649140836
-
Regulation of tRNA bidirectional nuclear-cytoplasmic trafficking in Saccharomyces cerevisiae
-
Murthi A, Shaheen HH, Huang HY, Preston MA, Lai TP, Phizicky EM, Hopper AK. 2010. Regulation of tRNA bidirectional nuclear-cytoplasmic trafficking in Saccharomyces cerevisiae. Mol Biol Cell 21: 639-649.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 639-649
-
-
Murthi, A.1
Shaheen, H.H.2
Huang, H.Y.3
Preston, M.A.4
Lai, T.P.5
Phizicky, E.M.6
Hopper, A.K.7
-
55
-
-
55549137731
-
Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems
-
Nakai Y, Nakai M, Hayashi H. 2008. Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems. J Biol Chem 283: 27469-27476.
-
(2008)
J Biol Chem
, vol.283
, pp. 27469-27476
-
-
Nakai, Y.1
Nakai, M.2
Hayashi, H.3
-
56
-
-
62549117409
-
Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions
-
Noma A, Sakaguchi Y, Suzuki T. 2009. Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions. Nucleic Acids Res 37: 1335-1352.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1335-1352
-
-
Noma, A.1
Sakaguchi, Y.2
Suzuki, T.3
-
57
-
-
79960582843
-
Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast
-
Ohira T, Suzuki T. 2011. Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast. Proc Natl Acad Sci 108: 10502-10507.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 10502-10507
-
-
Ohira, T.1
Suzuki, T.2
-
58
-
-
0032971711
-
Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation
-
Otero G, Fellows J, Li Y, de Bizemont T, Dirac AM, Gustafsson CM, Erdjument-Bromage H, Tempst P, Svejstrup JQ. 1999. Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. Mol Cell 3: 109-118.
-
(1999)
Mol Cell
, vol.3
, pp. 109-118
-
-
Otero, G.1
Fellows, J.2
Li, Y.3
De Bizemont, T.4
Dirac, A.M.5
Gustafsson, C.M.6
Erdjument-Bromage, H.7
Tempst, P.8
Svejstrup, J.Q.9
-
59
-
-
71549130107
-
Do all modifications benefit all tRNAs?
-
Phizicky EM, Alfonzo JD. 2010. Do all modifications benefit all tRNAs? FEBS Lett 584: 265-271.
-
(2010)
FEBS Lett
, vol.584
, pp. 265-271
-
-
Phizicky, E.M.1
Alfonzo, J.D.2
-
60
-
-
0037007220
-
Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop
-
Pintard L, Lecointe F, Bujnicki JM, Bonnerot C, Grosjean H, Lapeyre B. 2002. Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop. EMBO J 21: 1811-1820.
-
(2002)
EMBO J
, vol.21
, pp. 1811-1820
-
-
Pintard, L.1
Lecointe, F.2
Bujnicki, J.M.3
Bonnerot, C.4
Grosjean, H.5
Lapeyre, B.6
-
61
-
-
84882313983
-
Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing
-
Pratt-Hyatt M, Pai DA, Haeusler RA, Wozniak GG, Good PD, Miller EL, McLeod IX, Yates JR III, Hopper AK, Engelke DR. 2013. Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing. Proc Natl Acad Sci 110: E3081-E3089.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. E3081-E3089
-
-
Pratt-Hyatt, M.1
Pai, D.A.2
Haeusler, R.A.3
Wozniak, G.G.4
Good, P.D.5
Miller, E.L.6
McLeod, I.X.7
Yates, J.R.8
Hopper, A.K.9
Engelke, D.R.10
-
62
-
-
84872584130
-
His 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae
-
His 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae. RNA 19: 243-256.
-
(2013)
RNA
, vol.19
, pp. 243-256
-
-
Preston, M.A.1
D'Silva, S.2
Kon, Y.3
Phizicky, E.M.4
-
63
-
-
69949093364
-
Heterologous expression of L. major proteins in S. cerevisiae: A test of solubility, purity, and gene recoding
-
Quartley E, Alexandrov A, Mikucki M, Buckner FS, Hol WG, DeTitta GT, Phizicky EM, Grayhack EJ. 2009. Heterologous expression of L. major proteins in S. cerevisiae: a test of solubility, purity, and gene recoding. J Struct Funct Genomics 10: 233-247.
-
(2009)
J Struct Funct Genomics
, vol.10
, pp. 233-247
-
-
Quartley, E.1
Alexandrov, A.2
Mikucki, M.3
Buckner, F.S.4
Hol, W.G.5
DeTitta, G.T.6
Phizicky, E.M.7
Grayhack, E.J.8
-
64
-
-
15244355534
-
Elp1p, the yeast homolog of the FD disease syndrome protein, negatively regulates exocytosis independently of transcriptional elongation
-
Rahl PB, Chen CZ, Collins RN. 2005. Elp1p, the yeast homolog of the FD disease syndrome protein, negatively regulates exocytosis independently of transcriptional elongation. Mol Cell 17: 841-853.
-
(2005)
Mol Cell
, vol.17
, pp. 841-853
-
-
Rahl, P.B.1
Chen, C.Z.2
Collins, R.N.3
-
65
-
-
77949447172
-
RNAstructure: Software for RNA secondary structure prediction and analysis
-
Reuter JS, Mathews DH. 2010. RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinform 11: 129.
-
(2010)
BMC Bioinform
, vol.11
, pp. 129
-
-
Reuter, J.S.1
Mathews, D.H.2
-
68
-
-
84859985750
-
A yeast prion, Mod5, promotes acquired drug resistance and cell survival under environmental stress
-
Suzuki G, Shimazu N, Tanaka M. 2012. A yeast prion, Mod5, promotes acquired drug resistance and cell survival under environmental stress. Science 336: 355-359.
-
(2012)
Science
, vol.336
, pp. 355-359
-
-
Suzuki, G.1
Shimazu, N.2
Tanaka, M.3
-
70
-
-
0025838327
-
Absence of hisT-mediated tRNA pseudouridylation results in a uracil requirement that interferes with Escherichia coli K-12 cell division
-
Tsui HC, Arps PJ, Connolly DM, Winkler ME. 1991. Absence of hisT-mediated tRNA pseudouridylation results in a uracil requirement that interferes with Escherichia coli K-12 cell division. J Bacteriol 173: 7395-7400.
-
(1991)
J Bacteriol
, vol.173
, pp. 7395-7400
-
-
Tsui, H.C.1
Arps, P.J.2
Connolly, D.M.3
Winkler, M.E.4
-
71
-
-
0035801515
-
Improvement of reading frame maintenance is a common function for several tRNA modifications
-
Urbonavicius J, Qian Q, Durand JM, Hagervall TG, Björk GR. 2001. Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J 20: 4863-4873.
-
(2001)
EMBO J
, vol.20
, pp. 4863-4873
-
-
Urbonavicius, J.1
Qian, Q.2
Durand, J.M.3
Hagervall, T.G.4
Björk, G.R.5
-
72
-
-
34249870122
-
Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines
-
Weixlbaumer A, Murphy FV IV, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V. 2007. Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines. Nat Struct Mol Biol 14: 498-502.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 498-502
-
-
Weixlbaumer, A.1
Murphy, F.V.2
Dziergowska, A.3
Malkiewicz, A.4
Vendeix, F.A.5
Agris, P.F.6
Ramakrishnan, V.7
-
73
-
-
79958053947
-
The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA
-
Whipple JM, Lane EA, Chernyakov I, D'Silva S, Phizicky EM. 2011. The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA. Genes Dev 25: 1173-1184.
-
(2011)
Genes Dev
, vol.25
, pp. 1173-1184
-
-
Whipple, J.M.1
Lane, E.A.2
Chernyakov, I.3
D'Silva, S.4
Phizicky, E.M.5
-
74
-
-
84884598021
-
Loss of a conserved tRNA anticodon modification perturbs cellular signaling
-
Zinshteyn B, Gilbert WV. 2013. Loss of a conserved tRNA anticodon modification perturbs cellular signaling. PLoS Genet 9: e1003675.
-
(2013)
PLoS Genet
, vol.9
-
-
Zinshteyn, B.1
Gilbert, W.V.2
|