Delving deeper into technological innovations to understand differences in rice quality

Rice

Volumn 8, Issue 1, 2015, Pages

  Calingacion, Mariafe ^a,b,c   Fang, Lu ^c   Quiatchon Baeza, Lenie ^a,d   Mumm, Roland ^b   Riedel, Arthur ^c   Hall, Robert D ^b   Fitzgerald, Melissa ^c  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Climate change; Consumer acceptance; Eating quality; Metabolomics; Rice

Indexed keywords

EID: 84961291474     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1186/s12284-015-0043-8     Document Type: Article

References (61)

1. Bahar B, Altug T (2009) Flavour characterization of sumach (Rhus coriaria L.) by means of GC/MS and sensory flavour profile analysis techniques. Int J Food Prop 12(2):379–387, doi:10.1080/10942910701799249
2. Bates D, Maechler M, Bolker B, Walker S (2014) lme4: Linear mixed-effects models using Eigen and S4. R package, http://cran.r-project.org/web/packages/lme4/index.html
3. Bett-Garber K, Champagne E, Thomson J, Lea J (2012) Relating raw rice colour and composition to cooked rice colour. J Sci Food Agric 92(2):283–291, doi:10.1002/jsfa.4573
4. Boualaphanh C, Calingacion M, Cuevas R, Jothityangkoon D, Sanitchon J, Fitzgerald M (2011) Yield and quality of traditional and improved Lao varieties of rice. Sci Asia 37(2):89–97, doi:10.2306/scienceasia1513-1874.2011.37.089
5. Bradbury L, Fitzgerald T, Henry R, Jin Q, Waters D (2005) The gene for fragrance in rice. Plant Biotechnol J 3(3):363–370, doi:10.1111/j.1467-7652.2005.00131.x
6. Bryant R, McClung A (2011) Volatile profiles of aromatic and non-aromatic rice cultivars using SPME/GC–MS. Food Chem 124(2):501–513, doi:10.1016/j.foodchem.2010.06.061
7. Buttery R, Turnbaugh J, Ling L (1988) Contribution of volatiles to rice aroma. J Agric Food Chem 36(5):1006–1009, doi:10.1021/jf00083a025
8. Calingacion M, Boualaphanh C, Daygon V, Anacleto R, Sackville Hamilton R, Biais B, Deborde C, Maucourt M, Moing A, Mumm R, de Vos R, Erban A, Kopka J, Hansen T, Laursen K, Schjoerring J, Hall R, Fitzgerald M (2012) A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8(5):771–783, doi:10.1007/s11306-011-0374-4
9. Calingacion M, Laborte A, Nelson A, Resurreccion A, Concepcion J, Daygon V, Mumm R, Reinke R, Dipti S, Bassinello P, Manful J, Sophany S, Lara K, Bao J, Xie L, Loaiza K, El-hissewy A, Gayin J, Sharma N, Rajeswari S, Manonmani S, Rani N, Kota S, Indrasari S, Habibi F, Hosseini M, Tavasoli F, Suzuki K, Umemoto T, Boualaphanh C, Lee H, Hung Y, Ramli A, Aung P, Ahmad R, Wattoo J, Bandonill E, Romero M, Brites C, Hafeel R, Lur H, Cheaupun K, Jongdee S, Blanco P, Bryant R, Thi Lang N, Hall RD, Fitzgerald M (2014) Diversity of global rice markets and the science required for consumer-targeted rice breeding. PLoS One 9(1):e85106, doi:10.1371/journal.pone.0085106
10. Champagne E, Bett-Garber K, Thompson J, Mutters R, Grimm C, McClung A (2005) Effects of drain and harvest dates on rice sensory and physicochemical properties. Cereal Chem 82(4):369–374
11. Champagne E, Bett-Garber K, Fitzgerald M, Grimm C, Lea J, Ohtsubo K, Jongdee S, Xie L, Bassinello P, Resurreccion A, Ahmad R, Habibi F, Reinke R (2010) Important Sensory Properties Differentiating Premium Rice Varieties. Rice 3:270–281, doi:10.1007/s12284-010-9057-4
12. Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, Cheng Z, Liu X, Xu M (2008) Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance. Plant Cell 20(7):1850–1861, doi:10.1105/tpc.108.058917
13. Cramer G, Wailes E, Shui S (1993) Impacts of liberalizing trade in the world rice market. Am J Agric Econ 75(1):219–226, doi:10.2307/1242970
14. Daygon V, Fitzgerald M (2013) Application of metabolomics for providing a new generation of selection tools for crop improvement. In: Hot Topics in Metabolomics: Food and Nutrition. Future Science Book Series. Future Science Ltd, pp 6–16. doi:10.4155/ebo.13.458
15. Dejean S, Gonzalez I, Le Cao K, Monget P, Coquery J, Yao F, Liquet B, Rohart F (2013) mixOmics: Omics data integration project. R package
16. Espino A, Cinense M (2010) Water management and mulching on rice production under aerobic condition. Philippine Agric Mechanisation J 17(1):1–10
17. Fanzo J, Pronyk P (2011) A review of global progress toward the Millennium Development Goal 1 Hunger Target. Food Nutr Bull 32(2):144–158
18. Fitzgerald M, McCouch S, Hall R (2009) Not just a grain of rice: the quest for quality. Trends Plant Sci 14(3):133–139
19. Ghimire K, Quiatchon L, Vikram P, Swamy B, Dixit S, Ahmed H, Hernandez J, Borromeo T, Kumar A (2012) Identification and mapping of a QTL (qDTY1.1) with a consistent effect on grain yield under drought. Field Crop Res 131:88–96, doi:10.1016/j.fcr.2012.02.028
20. Gift N, Gormley I, Brennan L, team tRC (2010) MetabolAnalyze: probabilistic principal components analysis for metabolomic data. R package, 1.3 edn., http://www.cran.r-project.org/web/packages/MetabolAnalyze/index.html
21. Giné Bordonaba J, Terry L (2010) Manipulating the taste-related composition of strawberry fruits (Fragaria × ananassa) from different cultivars using deficit irrigation. Food Chem 122(4):1020–1026
22. Goodman D, Robison R (2013) Economic development, social status and political consciousness. The new rich in Asia. Routledge, New York
23. Guan Y, Serraj R, Liu S, Xu J, Ali J, Wang W, Venus E, Zhu L, Li Z (2010) Simultaneously improving yield under drought stress and non-stress conditions: A case study of rice (Oryza sativa L.). J Exp Bot 61(15):4145–4156
24. Hall R, Brouwer I, Fitzgerald M (2008) Plant metabolomics and its potential application for human nutrition. Physiol Plant 132(2):162–175, doi:10.1111/j.1399-3054.2007.00989.x
25. Husson F, Josse J, Le S, Mazet J (2013) FactoMineR: Multivariate exploratory data analysis and data mining with R. R package, http://cran.r-project.org/web/packages/FactoMineR/index.html
26. IPCC (2014) IPCC Fifth Assessment Report: Working Group II Report ‘Impacts, adaptation and vulnerability’
27. Jezussek M, Juliano B, Schieberle P (2002) Comparison of key aroma compounds in cooked brown rice varieties based on aroma extract dilution analyses (Journal of Agricultural and Food Chemistry). J Agric Food Chem 50(5):1101–1105, doi:10.1021/jf0108720
28. Kharas H, Gertz G (eds) (2010) The New Global Middle Class: A Crossover from West to East. China’s Emerging Middle Class: Beyond Economic Transformation. Brookings Institution Press, Washington DC, USA.
29. Knutson T, Tuleya R (2004) Impact of CO2-induced warming on simulated hurricane intensity and precipitation: Sensitivity to the choice of climate model and convective parameterization. J Climate 17(18):3477–3495
30. Kovach M, Calingacion M, Fitzgerald M, McCouch S (2009) The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci 106(34):14444–14449, doi:10.1073/pnas.0904077106
31. Kumar A, Bernier J, Verulkar S, Lafitte H, Atlin G (2008) Breeding for drought tolerance: Direct selection for yield, response to selection and use of drought-tolerant donors in upland and lowland-adapted populations. Field Crop Res 107(3):221–231, doi:10.1016/j.fcr.2008.02.007
32. Kumar A, Dixit S, Ram T, Yadaw R, Mishra K, Mandal N (2014) Breeding high-yielding drought-tolerant rice: genetic variations and conventional and molecular approaches. Journal of Experimental Botany:1–14. doi:10.1093/jxb/eru363
33. Laguerre M, Mestres C, Davrieux F, Ringuet J, Boulanger R (2007) Rapid discrimination of scented rice by solid-phase microextraction, mass spectrometry, and multivariate analysis used as a mass sensor. J Agric Food Chem 55(4):1077–1083, doi:10.1021/jf0623992
34. Lam H, Proctor A (2003) Milled rice oxidation volatiles and odor development. J Food Sci 68(9):2676–2681, doi:10.1111/j.1365-2621.2003.tb05788.x
35. Leonardos G, Kendall D, Barnard N (1969) Odor threshold determinations of 53 odorant chemicals. J Air Pollut Control Assoc 19(2):91–95, doi:10.1080/00022470.1969.10466465
36. Loper G, Flath R, Webster J (1971) Identification of Ocimene in Alfalfa Flower Aroma by Combined GC-Mass Spectrometry1. Crop Sci 11(1):61–63, doi:10.2135/cropsci1971.0011183X001100010020x
37. Mackill D, Ismail A, Singh U, Labios R, Paris T, Donald L (2012) Chapter 6 - Development and rapid adoption of submergence-tolerant (Sub1) rice varieties. In: Advances in Agronomy, vol 115. Academic Press, pp 299–352. doi:10.1016/B978-0-12-394276-0.00006-8
38. Maraval I, Mestres C, Pernin K, Ribeyre F, Boulanger R, Guichard E, Gunata Z (2008) Odor-active compounds in cooked rice cultivars from Camargue (France) analyzed by GC − O and GC − MS (Journal of Agricultural and Food Chemistry). J Agric Food Chem 56(13):5291–5298, doi:10.1021/jf7037373
39. Mathure S, Jawali N, Thengane R, Nadaf A (2014) Comparative quantitative analysis of headspace volatiles and their association with BADH2 marker in non-basmati scented, basmati and non-scented rice (Oryza sativa L.) cultivars of India. Food Chem 142:383–391, doi:10.1016/j.foodchem.2013.07.066
40. Monsoor M, Proctor A, Siebenmorgen T (2004) Surface lipid and free fatty acids (FFA) content of head and broken rice produced by milling after different drying treatments. Cereal Chem 81(6):705–709
41. O’Neill D, Phillips V (1992) A review of the control of odour nuisance from livestock buildings: Part 3, properties of the odorous substances which have been identified in livestock wastes or in the air around them. J Agric Eng Res 53:23–50, doi:10.1016/0021-8634(92)80072-Z
42. Palanog A, Swamy B, Shamsudin N, Dixit S, Hernandez J, Boromeo T, Cruz P, Kumar A (2014) Grain yield QTLs with consistent-effect under reproductive-stage drought stress in rice. Field Crop Res 161:46–54
43. Peng S, Huang J, Sheehy J, Laza R, Visperas R, Zhong X, Centeno G, Khush G, Cassman K (2004) Rice yields decline with higher night temperature from global warming. Proc Natl Acad Sci 101(27):9971–9975, doi:10.1073/pnas.0403720101
44. Quinn G, Keough J (2002) Experimental design and data analysis for biologists
45. RCoreTeam (2014). R package, http://www.r-project.org/
46. Saxton A (2004) Genetic analysis of complex traits using SAS. SAS. SAS Institute, Inc., Cary, NC
47. Septiningsih E, Pamplona A, Sanchez D, Neeraja C, Vergara G, Heuer S, Ismail A, Mackill D (2009) Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. Ann Bot 103(2):151–160, doi:10.1093/aob/mcn206
48. Sundaram R, Vishnupriya M, Biradar S, Laha G, Reddy G, Rani N, Sarma N, Sonti R (2008) Marker assisted introgression of bacterial blight resistance in Samba Mahsuri, an elite indica rice variety. Euphytica 160(3):411–422, doi:10.1007/s10681-007-9564-6
49. Trenberth K (2005) Uncertainty in hurricanes and global warming. Science 308(5729):1753–1754, doi:10.1126/science.1112551
50. United Nations (2014) World Population Prospects: The 2012 Revision vol Working Paper No. ESA/P/WP.235. United Nations, New York
51. van den Berg R, Hoefsloot H, Westerhuis J, Smilde A, van der Werf M (2006) Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genomics 7(142), doi:10.1186/1471-2164-7-142
52. Venuprasad R, Lafitte H, Atlin G (2007) Response to Direct Selection for Grain Yield under Drought Stress in Rice. Crop Sci 47(1):285–293, doi:10.2135/cropsci2006.03.0181
53. Venuprasad R, Bool M, Dalid C, Bernier J, Kumar A, Atlin G (2009) Genetic loci responding to two cycles of divergent selection for grain yield under drought stress in a rice breeding population. Euphytica 167(2):261–269, doi:10.1007/s10681-009-9898-3
54. Venuprasad R, Bool M, Quiatchon L, Atlin G (2012) A QTL for rice grain yield in aerobic environments with large effects in three genetic backgrounds. TAG Theor Appl Genet 124(2):323–332, doi:10.1007/s00122-011-1707-4
55. Vikram P, Swamy B, Dixit S, Ahmed H, Teresa Sta Cruz M, Singh A, Kumar A (2011) QDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds. BMC Genetics 12:89.
56. Wassmann R, Jagadish S, Heuer S, Ismail A, Redona E, Serraj R, Singh R, Howell G, Pathak H, Sumfleth K (2009) Climate Change Affecting Rice Production: The Physiological and Agronomic Basis for Possible Adaptation Strategies. Advances in Agronomy, vol 101. Academic Press, Burlington, MA, USA.
57. Win K, Korinsak S, Jantaboon J, Siangliw M, Lanceras-Siangliw J, Sirithunya P, Vanavichit A, Pantuwan G, Jongdee B, Sidhiwong N, Toojinda T (2012) Breeding the Thai jasmine rice variety KDML105 for non-age-related broad-spectrum resistance to bacterial blight disease based on combined marker-assisted and phenotypic selection. Field Crop Res 137:186–194, doi:10.1016/j.fcr.2012.09.007
58. Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail A, Bailey-Serres J, Ronald P, Mackill D (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442(7103):705–708, doi:10.1038/nature04920
59. Yang D, Shewfelt R, Lee K, Kays S (2008) Comparison of odor-active compounds from six distinctly different rice flavor types. J Agric Food Chem 56(8):2780–2787, doi:10.1021/jf072685t
60. Yang D, Lee K, Kays S (2010) Characterization and discrimination of premium-quality, waxy, and black-pigmented rice based on odor-active compounds. J Sci Food Agric 90(15):2595–2601, doi:10.1002/jsfa.4126
61. Zeigler R, Barclay A (2008) The relevance of rice. Rice 1(1):3–10, doi:10.1007/s12284-008-9001-z