Diversity of global rice markets and the science required for consumer-targeted rice breeding

PLoS ONE

Volumn 9, Issue 1, 2014, Pages

  Calingacion, Mariafe ^a,b,c   Laborte, Alice ^a   Nelson, Andrew ^a   Resurreccion, Adoracion ^a,c   Concepcion, Jeanaflor Crystal ^a,c   Daygon, Venea Dara ^a,c,am   Mumm, Roland ^b,d   Reinke, Russell ^c,e,al   Dipti, Sharifa ^c,f   Bassinello, Priscila Zaczuk ^c,g   Manful, John ^c,h   Sophany, Sakhan ^c,i   Lara, Karla Cordero ^c,j   Bao, Jinsong ^c,k   Xie, Lihong ^c,l   Loaiza, Katerine ^c,m   El hissewy, Ahmad ^c,n   Gayin, Joseph ^c,o   Sharma, Neerja ^c,p   Rajeswari, Sivakami ^c,q   Manonmani, Swaminathan ^c,q   Rani, N Shobha ^c,r   Kota, Suneetha ^c,r   Indrasari, Siti Dewi ^c,s   Habibi, Fatemeh ^c,t   Hosseini, Maryam ^c,t   Tavasoli, Fatemeh ^c,t   Suzuki, Keitaro ^c,u   Umemoto, Takayuki ^c,v   Boualaphanh, Chanthkone ^c,w   Lee, Huei Hong ^c,x   Hung, Yiu Pang ^x   Ramli, Asfaliza ^c,y   Aung, Pa Pa ^c,z   Ahmad, Rauf ^c,aa   Wattoo, Javed Iqbal ^c,ab   Bandonill, Evelyn ^c,ac   Romero, Marissa ^c,ac   Brites, Carla Moita ^c,ad   Hafeel, Roshni ^c,ae   Lur, Huu Sheng ^c,af   Cheaupun, Kunya ^c,ag   Jongdee, Supanee ^c,ah   Blanco, Pedro ^c,ai   Bryant, Rolfe ^c,aj   Lang, Nguyen Thi ^c,ak   Hall, Robert D ^b,c,d   Fitzgerald, Melissa ^a,c,am   more..

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c International Network for Quality Rice   (Netherlands)

^d CENTRE FOR BIOSYSTEMS GENOMICS   (Netherlands)

^e NSW DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^f BANGLADESH RICE RESEARCH INSTITUTE   (Bangladesh)

^g EMBRAPA ARROZ E FEIJÃO   (Brazil)

^h AFRICA RICE CENTER AFRICARICE   (Benin)

ⁱ Cambodian Agricultural Research and Development Institute   (Cambodia)

^j Cambodian Agricultural Research and Development Institute ^*  (Chile)

^k ZHEJIANG UNIVERSITY   (China)

^l CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^m INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

ⁿ Agricultural Research Center   (Egypt)

^o Food Research Institute Ghana   (Ghana)

^p PUNJAB AGRICULTURAL UNIVERSITY   (India)

^q TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^r DIRECTORATE OF RICE RESEARCH   (India)

^s Indonesian Center for Rice Research (ICRR) BB Padi   (Indonesia)

^t RICE RESEARCH INSTITUTE OF IRAN   (Iran)

^u NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^v NATIONAL AGRICULTURAL RESEARCH CENTER FOR HOKKAIDO REGION   (Japan)

^w NAFRI   (Laos)

^x DEPARTMENT OF CROP SCIENCE   (Malaysia)

^y MARDI Seberang Perai Beg Berkunci   (Malaysia)

^z Ministry of Agriculture and Irrigation   (Myanmar)

^aa NATIONAL AGRICULTURAL RESEARCH CENTRE   (Pakistan)

^ab NATIONAL INSTITUTE FOR BIOTECHNOLOGY AND GENETIC ENGINEERING NIBGE   (Pakistan)

^ac PHILIPPINE RICE RESEARCH INSTITUTE   (Philippines)

^ad INSTITUTO NACIONAL DE INVESTIGAÇÃO AGRÁRIA E VETERINÁRIA   (Portugal)

^ae Rice Research Station Department of Agriculture   (Sri Lanka)

^af NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^ag Rice Department   (Thailand)

^ah Khon Kaen Rice Experiment Station   (Thailand)

^ai INSTITUTO NACIONAL DE INVESTIGACIÓN AGROPECUARIA INIA   (Uruguay)

^aj AGRICULTURAL RESEARCH SERVICE   (United States)

^ak Cuu Long Delta Rice Research Institute   (Viet Nam)

^al National Institute of Crop Science   (South Korea)

^am UNIVERSITY OF QUEENSLAND   (Australia)

more..

Author keywords

[No Author keywords available]

Indexed keywords

AMYLOSE;

AGRONOMIC TRAIT; AROMA; ARTICLE; BIOCHEMISTRY; BIODIVERSITY; CARBOHYDRATE ANALYSIS; CONSUMER; CROP IMPROVEMENT; GELATINIZATION; GRAIN; GRAIN (STRUCTURE); NONHUMAN; PLANT BREEDING; PLANT IDENTIFICATION; PLANT STRUCTURES; RICE;

AMYLOSE; BREEDING; CLIMATE; INTERNATIONALITY; ODORS; ORYZA SATIVA; TEMPERATURE;

EID: 84897998610     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0085106     Document Type: Article

References (66)

1. Lee J-W, Hong K (2012) Economic growth in Asia: Determinants and prospects. Japan and the World Economy 24: 101-113.
2. FAO WaI (2012) The State of Food Insecurity in the World 2012. Economic growth is necessary but not sufficient to accelerate reduction of hunger and malnutrition. Rome FAO.
3. Government A (2012) Australia in the Asian Century.
4. ADB (2012) Food Security and Poverty in Asia Pacific: Key Challenges and Policy Issues. Philippines: Asian Development Bank.
5. ANZ (2012) Greener Pastures: The global soft commodity opportunity for Australia and New Zealand. 80 p.
6. Foundation TG (2012) Feeding Asia and the World' Australia has the potential to be a global food superpower.
7. Stern N (2006) The Economics of Climate Change, The Stern Review. In: Office of Climate Change BG, editor: Cambridge. pp. 700.
8. Pingali P (2007) Westernization of Asian diets and the transformation of food systems: Implications for research and policy. Food Policy 32: 281-298.
9. Mohanty S (2013) Trends in Global Rice Production. Rice Today 13: 44-45.
10. Supakornchuwong C, Suwannaporn P (2012) Attitudes toward rice compared with potatoes and pasta among british, french, dutch and belgian consumers. Journal of Sensory Studies 27: 71-77.
11. Suwannaporn P, Linnemann A, Chaveesuk R (2008) Consumer preference mapping for rice product concepts. British Food Journal 110: 595-606. (Pubitemid 351914091)
12. Fitzgerald MA, McCouch SR, Hall RD (2009) Not just a grain of rice: the quest for quality. Trends in Plant Science 14: 133-139.
13. Boualaphanh C, Daygon VD, Calingacion MN, Sanitchon J, Jothityangkoon D, et al. (2011) Use of New Generation Single Nucleotide Polymorphism Genotyping for Rapid Development of Near-Isogenic Lines in Rice. Crop Sci 51: 2067-2073.
14. Tomlins KI, Manful JT, Larwer P, Hammond L (2005) Urban consumer preferences and sensory evaluation of locally produced and imported rice in West Africa. Food Quality and Preference 16: 79-89. (Pubitemid 39378109)
15. Rachmat R, Thahir R, Gummert M (2006) The empirical relationship between price and quality of rice at market level in West Java. Indonesian Journal of Agricultural Science 7: 27-33.
16. Musa M, Othman N, Fatah FA (2011) Determinants of Consumers Purchasing Behavior for Rice in Malaysia. American International Journal of Contemporary Research 1 159-167.
17. Minten B, Murshid KAS, Reardon T (2013) Food Quality Changes and Implications: Evidence from the Rice Value Chain of Bangladesh. World Development 42: 100-113.
18. Diako C, Sakyi-Dawson E, Bediako-Amoa B, Saalia FK, Manful JT (2010) Consumer Perceptions, Knowledge and Preferences for Aromatic Rice Types in Ghana
19. Azabagaoglu MO, Gaytancioglu O (2009) Analyzing consumer preferences to different rice varieties in Turkey. Agricultura Tropica Et Subtropica 42: 118-125.
20. Anang BT, Adjetey SNA, Abiriwe SA (2011) Consumer preferences for rice quality characteristics and the effects on price in the Tamale metropolis, northern region, Ghana. International Journal of AgriScience 1: 67-74.
21. Abazari A, Mojaverian S-M, Hosseini-Yekani S-A (2012) Effective Factors on Rice Consumers' Preferences: A Case Study of Urban Consumers in Mazandaran Province of Iran. American Journal of Scientific Research 70-79.
22. Khush GS, Paule CM, de la Cruz N. Rice grain quality evaluation and improvement at IRRI; 1979; Los Banos. International Rice Research Institute. pp. 22-31.
23. Juliano BO (1985) Criteria and Tests for Rice Grain Qualities. In: Juliano BO, editor. Rice Chemistry and Technology. 2nd ed. St. Paul, MN: American Association of Cereal Chemists, Inc, pp. 43-524.
24. Commission E (2003) Council Regulation (EC) No 1785/2003 on the common organisation of the market in rice. Official Journal of the European Union: 1-18.
25. FAOSTAT (2013). www.faostat.fao.org
26. International Organization for Standardization (2011) ISO/DIS 6647-2: 2011-Rice - Determination of amylose content - Part 2: Routine methods. 10.
27. Ward RM, Gao Q, de Bruyn H, Gilbert RG, Fitzgerald MA (2006) Improved Methods for the Structural Analysis of the Amylose-Rich Fraction from Rice Flour. Biomacromolecules 7: 866-876.
28. Virk PS, Ford-Lloyd BV, Jackson MT, Newbury HJ (1995) Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74: 170-179.
29. Rozen S, Skaletsky H (1999) Primer3 on the WWW for General Users and for Biologist Programmers. In: Misener S, Krawetz S, editors. Bioinformatics Methods and Protocols: Humana Press. pp. 365-386.
30. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symposium Series no 41: Oxford University Press.
31. Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, et al. (2002) Gramene, a Tool for Grass Genomics. Plant Physiology 130: 1606-1613. (Pubitemid 36035161)
32. Cuevas RP, Daygon VD, Corpuz HM, Reinke RF, Waters DLE, et al. (2010) Melting the secrets of gelatinisation temperature in rice. Functional Plant Biology 37: 439-447.
33. Little R, Hilder G, Dawson E (1958) Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chemistry Journal 35.
34. Cagampang GB, Perez CM, Juliano BO (1973) A gel consistency test for eating quality in rice. Journal of the Science of Food and Agriculture 24: 1589-1594.
35. Fitzgerald MA, Sackville Hamilton NR, Calingacion MN, Verhoeven HA, Butardo VM (2008) Is there a second fragrance gene in rice? Plant Biotechnology Journal 6: 416-423. (Pubitemid 351490225)
36. Calingacion M, Boualaphanh C, Daygon V, Anacleto R, Sackville Hamilton R, et al. (2012) A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8: 771-783.
37. Lommen A, Kools H (2012) MetAlign 3.0: performance enhancement by efficient use of advances in computer hardware. Metabolomics 8: 719-726.
38. Tikunov Y, Laptenok S, Hall R, Bovy A, de Vos R (2012) MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data. Metabolomics 8: 714-718.
39. Fitzgerald MA (2010) Cereal grains. Rice: characteristics and quality requirements. Woodhead Publishing Series in Food Science, Technology and Nutrition. pp. 212-236.
40. Zhao X, Fitzgerald M (2013) Climate Change: Implications for the Yield of Edible Rice. PLoS ONE 8: e66218.
41. Fitzgerald MA, Bergman CJ, Resurreccion AP, Moller J, Jimenez R, et al. (2009) Addressing the dilemmas of measuring amylose in rice. Cereal Chemistry 86: 492-498.
42. Tran N, A, Daygon V, D, Resurreccion A, Cuevas R, P, Corpuz H, et al. (2011) A single nucleotide polymorphism on the Waxy gene explains gel consistency. Theoretical & Applied Genetics 123: 519-525.
43. Umemoto T, Horibata T, Aoki N, Hiratsuka M, Yano M, et al. (2008) Effects of variations in starch synthase on starch properties and eating quality of rice. Plant Production Science 11: 472-480.
44. Huang R, Jiang L, Zheng J, Wang T, Wang H, et al. (2012) Genetic bases of rice grain shape: so many genes, so little known. Trends in Plant Science.
45. Fan C, Xing Y, Mao H, Lu T, Han B, et al. (2006) GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. TAG Theoretical and Applied Genetics 112: 1164-1171.
46. Fan CC, Yu SB, Wang CR, Xing YZ (2009) A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker. Theoretical and Applied Genetics 118: 465-472.
47. Takano-Kai N, Jiang H, Kubo T, Sweeney M, Matsumoto T, et al. (2009) Evolutionary History of GS3, a Gene Conferring Grain Length in Rice. Genetics, 182 182: 1323-1334.
48. Zhang X, Wang J, Huang J, Lan H, Wang C, et al. (2012) Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proceedings of the National Academy of Sciences of the United States of America 109: 21534-21539.
49. Sano Y (1984) Differential regulation of waxy gene expression in rice endosperm. Theoret Appl Genetics 68: 467-473.
50. Smith AM, Denyer K, Martin C (1997) The synthesis of the starch granule. Annu Rev Plant Physiol Plant Mol Biol 48: 67-87.
51. Ayres NM, McClung AM, Larkin PD, Bligh HFJ, Jones CA, et al. (1997) Microsatellites and a single-nucleotide polymorphism differentiate apparentamylose classes in an extended pedigree of US rice germ plasm. Theor Appl Genet 94: 773-781. (Pubitemid 27253559)
52. Chen M-H, Bergman C, Pinson S, Fjellstrom R (2008) Waxy gene haplotypes: Associations with apparent amylose content and the effect by the environment in an international rice germplasm collection. Journal of Cereal Science 47: 536-545. (Pubitemid 351508357)
53. Mikami I, Uwatoko N, Ikeda Y, Yamaguchi J, Hirano HY, et al. (2008) Allelic diversification at the wx locus in landraces of Asian rice. 116: 979-989.
54. Wanchana S, Toojinda T, Tragoonrung S, Vanavichit A (2003) Duplicated coding sequence in the waxy allele of tropical glutinous rice (Oryza sativa L.). Plant Science 165: 1193-1199. (Pubitemid 37481348)
55. Cuevas R, P, Fitzgerald M (2012) Genetics of Rice Quality. In: Junjicic S, editor. Genetic Diversity. Rijeka, Croatia: In-Tech.
56. Larkin PD, Park WD (2003) Association of waxy gene single nucleotide polymorphisms with starch characteristics in rice (Oryza sativa L.). Molecular Breeding 12: 335-339. (Pubitemid 38092579)
57. Slade L, Levine H (1989) A food polymer science approach to selected aspects of starch gelatinization and retrogradation. In: Millane R, BeMiller JN, Chandrasekaran R, editors. Frontiers in Carbohydrate Research 1 Food Applications. London: Elsevier. pp. 215-270.
58. Waters DLE, Henry RJ, Reinke RF, Fitzgerald MA (2006) Gelatinization temperature of rice explained by polymorphisms in starch synthase. Plant Biotechnology Journal 4: 115-122.
59. Umemoto T, Yano M, Satoh H, Shomura A, Nakamura Y (2002) Mapping of a gene responsible for the difference in amylopectin structure between japonicatype and indica-type rice varieties. Theoretical and Applied Genetics 104: 1-8. (Pubitemid 36064853)
60. Bao J-S, Corke H, Sun M (2006) Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.). Theoretical and Applied Genetics 113: 1171-1183. (Pubitemid 44581682)
61. Umemoto T, Aoki N (2005) Single-nucleotide polymorphisms in rice starch synthase IIa that alter starch gelatinisation and starch association of the enzyme. Functional Plant Biology 32: 763-768. (Pubitemid 41426374)
62. Buttery RG, Ling LC, Juliano BO, Turnbaugh JG (1983) Cooked rice aroma and 2-acetyl-1-pyrroline. Journal of Agricultural and Food Chemistry 31: 823- 826.
63. Courtois B, Frouin J, Greco R, Bruschi G, Droc G, et al. (2012) Genetic Diversity and Population Structure in a European Collection of Rice. Crop Sci 52: 1663-1675.
64. Champagne ET, Bett-Garber KL, Fitzgerald MA, Grimm CC, Lea J, et al. (2010) Important Sensory Properties Differentiating Premium Rice Varieties. Rice 3: 270-281.
65. Limpawattana M, Shewfelt RL (2010) Flavor Lexicon for Sensory Descriptive Profiling of Different Rice Types. Journal of Food Science 75: S199-S205.
66. Bryant RJ, McClung AM (2011) Volatile profiles of aromatic and non-aromatic rice cultivars using SPME/GC-MS. Food Chemistry 124: 501-513.