-
1
-
-
20144387232
-
Large-scale Transcriptome Analyses Reveal New Genetic Marker Candidates of Head, Neck, and Thyroid Cancer
-
Reis EM, Ojopi EPB, Alberto FL, Rahal P, Tsukumo F, Mancini UM, Guimaraes GS, Thompson GMA, Camacho C, Miracca E, Carvalho AL, Machado AA, Paquola ACM, Cerutti JM, da Silva AM, Pereira GG, Valentini SR, Nagai MA, Kowalski LP, Verjovski-Almeida S, Tajara EH, Dias-Neto E, Consortium HNA: Large-scale Transcriptome Analyses Reveal New Genetic Marker Candidates of Head, Neck, and Thyroid Cancer. Cancer Res 2005, 65:1693-1699 [http://cancerres.aacrjournals.org/cgi/content/abstract/65/5/1693].
-
(2005)
Cancer Res
, vol.65
, pp. 1693-1699
-
-
Reis, E.M.1
Ojopi, E.P.B.2
Alberto, F.L.3
Rahal, P.4
Tsukumo, F.5
Mancini, U.M.6
Guimaraes, G.S.7
Thompson, G.M.A.8
Camacho, C.9
Miracca, E.10
Carvalho, A.L.11
Machado, A.A.12
Paquola, A.C.M.13
Cerutti, J.M.14
da Silva, A.M.15
Pereira, G.G.16
Valentini, S.R.17
Nagai, M.A.18
Kowalski, L.P.19
Verjovski-Almeida, S.20
Tajara, E.H.21
Dias-Neto, E.22
Consortium, H.N.A.23
more..
-
2
-
-
11344277349
-
Towards replacing closed with open target selection strategies
-
van der Werf MJ: Towards replacing closed with open target selection strategies. Trends Biotechnol 2005, 23:11-16.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 11-16
-
-
van der Werf, M.J.1
-
3
-
-
20944448468
-
Microbial Metabolomics: Replacing trial-and-error by the unbiased selection and ranking of targets
-
van der Werf MJ, Jellema. RH, Hankemeier T: Microbial Metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets. J Ind Microbiol Biotechnol 2005, 32:234-252 [http://dx.doi.org./10.1007/s10295-005-0231-4].
-
(2005)
J Ind Microbiol Biotechnol
, vol.32
, pp. 234-252
-
-
van der Werf, M.J.1
Jellema, R.H.2
Hankemeier, T.3
-
4
-
-
0036007687
-
Metabolomics - The link between genotypes and phenotypes
-
Fiehn O: Metabolomics - the link between genotypes and phenotypes. Plant Mol Biol 2002, 48:151-171.
-
(2002)
Plant Mol Biol
, vol.48
, pp. 151-171
-
-
Fiehn, O.1
-
5
-
-
20344373068
-
Analytical precision, biological variation, and mathematical normalization in high data density metabolomics
-
Shurubor YI, Paolucci U, Krasnikov BF, Matson WR, Kristal BS: Analytical precision, biological variation, and mathematical normalization in high data density metabolomics. Metabolomics 2005, 1:75-85.
-
(2005)
Metabolomics
, vol.1
, pp. 75-85
-
-
Shurubor, Y.I.1
Paolucci, U.2
Krasnikov, B.F.3
Matson, W.R.4
Kristal, B.S.5
-
6
-
-
0026770707
-
Evolving factor analysis in the presence of heteroscedastic noise
-
Keller HR, Massart DL, Liang YZ, Kvalheim OM: Evolving factor analysis in the presence of heteroscedastic noise. Anal Chim Acta 1992, 263:29-36.
-
(1992)
Anal Chim Acta
, vol.263
, pp. 29-36
-
-
Keller, H.R.1
Massart, D.L.2
Liang, Y.Z.3
Kvalheim, O.M.4
-
7
-
-
0002790345
-
Preprocessing of analytical profiles in the presence of homoscedastic or heteroscedastic noise
-
Kvalheim OM, Brakstad F, Liang Y: Preprocessing of analytical profiles in the presence of homoscedastic or heteroscedastic noise. Anal Chem 1994, 66:43-51.
-
(1994)
Anal Chem
, vol.66
, pp. 43-51
-
-
Kvalheim, O.M.1
Brakstad, F.2
Liang, Y.3
-
8
-
-
0037282748
-
Centering and scaling in component analysis
-
Bro R. Smilde AK: Centering and scaling in component analysis. J Chemom 2003, 17:16-33.
-
(2003)
J Chemom
, vol.17
, pp. 16-33
-
-
Bro, R.1
Smilde, A.K.2
-
11
-
-
27144506971
-
Fusion of mass-spectrometry-based metabolomics data
-
Smilde AK, van der Werf MJ, Bijlsma S, van der Werff-van der Vat B, Jellema RH: Fusion of mass-spectrometry-based metabolomics data. Anal Chem 2005, 77:6729-6736 [http://dx.doi.org/10.1021/ac051080y].
-
(2005)
Anal Chem
, vol.77
, pp. 6729-6736
-
-
Smilde, A.K.1
van der Werf, M.J.2
Bijlsma, S.3
van der Werff-van der Vat, B.4
Jellema, R.H.5
-
12
-
-
0142102568
-
Improved analysis of multivariate data by variable stability scaling: Application to NMR-based metabolic profiling
-
Keun HC, Ebbels TMD, Antti H, Bollard ME, Beckonert O, Holmes E, Lindon JC, Nicholson JK: Improved analysis of multivariate data by variable stability scaling: application to NMR-based metabolic profiling. Anal Chim Acta 2003, 490:265-276 [http://dx.doi.org/10.1016/S0003-2670(03)00094-1].
-
(2003)
Anal Chim Acta
, vol.490
, pp. 265-276
-
-
Keun, H.C.1
Ebbels, T.M.D.2
Antti, H.3
Bollard, M.E.4
Beckonert, O.5
Holmes, E.6
Lindon, J.C.7
Nicholson, J.K.8
-
13
-
-
0001872799
-
Assumptions of analysis of variance
-
In 3rd edition. New York, W.H. Freeman and Co
-
Sokal RR, Rohif FJ: Assumptions of analysis of variance. In Biometry Volume 13. 3rd edition. New York, W.H. Freeman and Co.; 1995:392-450.
-
(1995)
Biometry
, vol.13
, pp. 392-450
-
-
Sokal, R.R.1
Rohif, F.J.2
-
14
-
-
0025253582
-
Bacterial degradation of styrene involving a novel flavin adenine dinucleotide-dependent styrene monooxygenase
-
Hartmans S, van der Werf MJ, de Bont JAM: Bacterial degradation of styrene involving a novel flavin adenine dinucleotide-dependent styrene monooxygenase. Appl Environ Microbiol 1990, 56:1347-1351.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1347-1351
-
-
Hartmans, S.1
van der Werf, M.J.2
de Bont, J.A.M.3
-
15
-
-
30744445438
-
Multivariate analysis of microarray data by principal component discriminant analysis: Prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12
-
van der Werf MJ, Pieterse B, van Luijk N, Schuren F, van der Werff-van der Vat B, Overkamp K. Jellema RH: Multivariate analysis of microarray data by principal component discriminant analysis: prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12. Microbiology 2006, 152:257-272.
-
(2006)
Microbiology
, vol.152
, pp. 257-272
-
-
van der Werf, M.J.1
Pieterse, B.2
van Luijk, N.3
Schuren, F.4
van der Werff-van der Vat, B.5
Overkamp, K.6
Jellema, R.H.7
-
16
-
-
30944465851
-
Quenching of microbial samples for increased reliability of microarray data
-
Pieterse B, Jellema RH, van der Werf MJ: Quenching of microbial samples for increased reliability of microarray data. J Microbiol Methods 2006, 64:207-216.
-
(2006)
J Microbiol Methods
, vol.64
, pp. 207-216
-
-
Pieterse, B.1
Jellema, R.H.2
van der Werf, M.J.3
-
17
-
-
0030174587
-
Determination of intermediary metabolites in Aspergillus niger
-
Ruijter GJG, Visser J: Determination of intermediary metabolites in Aspergillus niger. J Microbiol Methods 1996, 25:295-302.
-
(1996)
J Microbiol Methods
, vol.25
, pp. 295-302
-
-
Ruijter, G.J.G.1
Visser, J.2
-
18
-
-
33144485880
-
Microbial metabolomics with gas chromatography mass spectrometry
-
Koek M, Muilwijk B, van der Werf MJ, Hankemeier T: Microbial metabolomics with gas chromatography mass spectrometry. Anal Chem 2006, 78:1272-1281 [http://dx.doi.org/10.1021/ac051683+].
-
(2006)
Anal Chem
, vol.78
, pp. 1272-1281
-
-
Koek, M.1
Muilwijk, B.2
van der Werf, M.J.3
Hankemeier, T.4
-
19
-
-
0025318231
-
Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures
-
Verduyn C, Postma E, Scheffers WA, van Dijken JP: Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures. J Gen Microbiol 1990, 136:395-403.
-
(1990)
J Gen Microbiol
, vol.136
, pp. 395-403
-
-
Verduyn, C.1
Postma, E.2
Scheffers, W.A.3
van Dijken, J.P.4
-
20
-
-
0033452842
-
An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data
-
Stein SE: An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data. J Am Soc Mass Spectrom 1999, 10:770-781.
-
(1999)
J Am Soc Mass Spectrom
, vol.10
, pp. 770-781
-
-
Stein, S.E.1
-
21
-
-
27644509188
-
Matlab 7
-
Mathworks
-
Mathworks: Matlab 7. 2005.
-
(2005)
-
-
-
22
-
-
2942719559
-
PLS Toolbox 3.0
-
Eigenvector
-
Eigenvector: PLS Toolbox 3.0. 2003.
-
(2003)
-
-
-
23
-
-
4644291010
-
Analysis of longitudinal metabolomics data
-
Jansen JJ, Hoefsloot HCJ, Boelens HFM, van der Greef J, Smilde AK: Analysis of longitudinal metabolomics data. Bioinformatics 2004, 20:2438-2446.
-
(2004)
Bioinformatics
, vol.20
, pp. 2438-2446
-
-
Jansen, J.J.1
Hoefsloot, H.C.J.2
Boelens, H.F.M.3
van der Greef, J.4
Smilde, A.K.5
-
24
-
-
0000133998
-
An Analysis of Transformations
-
Box GEP, Cox DR: An Analysis of Transformations. J R Statist Soc B 1964, 26:211-252.
-
(1964)
J R Statist Soc B
, vol.26
, pp. 211-252
-
-
Box, G.E.P.1
Cox, D.R.2
-
26
-
-
0346494819
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
Krieger CJ, Zhang P, Mueller LA. Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD: MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res 2004, 32:D438-D442.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Krieger, C.J.1
Zhang, P.2
Mueller, L.A.3
Wang, A.4
Paley, S.5
Arnaud, M.6
Pick, J.7
Rhee, S.Y.8
Karp, P.D.9
-
27
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 2000, 28:27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
29
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95: 14863-14868.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
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