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Volumn 24, Issue 3, 2016, Pages 636-644

Streptococcus thermophilus CRISPR-Cas9 systems enable specific editing of the human genome

Author keywords

[No Author keywords available]

Indexed keywords

CASPASE 9; CRISPR ASSOCIATED PROTEIN; ENDONUCLEASE; GUIDE RNA; PROTEIN BINDING;

EID: 84960467897     PISSN: 15250016     EISSN: 15250024     Source Type: Journal    
DOI: 10.1038/mt.2015.218     Document Type: Article
Times cited : (214)

References (56)
  • 1
    • 84902185906 scopus 로고    scopus 로고
    • Genome engineering with targetable nucleases
    • Carroll, D. (2014). Genome engineering with targetable nucleases. Annu Rev Biochem 83: 409-439
    • (2014) Annu Rev Biochem , vol.83 , pp. 409-439
    • Carroll, D.1
  • 2
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber, MR. (2010). The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79: 181-211
    • (2010) Annu Rev Biochem , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 3
    • 50649100744 scopus 로고    scopus 로고
    • Mechanism of eukaryotic homologous recombination
    • San Filippo, J, Sung, P and Klein, H. (2008). Mechanism of eukaryotic homologous recombination. Annu Rev Biochem 77: 229-257
    • (2008) Annu Rev Biochem , vol.77 , pp. 229-257
    • San Filippo, J.1    Sung, P.2    Klein, H.3
  • 4
    • 84896142186 scopus 로고    scopus 로고
    • TALEN-mediated gene mutagenesis in rhesus and cynomolgus monkeys
    • Liu, H, Chen, Y, Niu, Y, Zhang, K, Kang, Y, Ge, W, et al. (2014). TALEN-mediated gene mutagenesis in rhesus and cynomolgus monkeys. Cell Stem Cell 14: 323-328
    • (2014) Cell Stem Cell , vol.14 , pp. 323-328
    • Liu, H.1    Chen, Y.2    Niu, Y.3    Zhang, K.4    Kang, Y.5    Ge, W.6
  • 7
    • 84875712361 scopus 로고    scopus 로고
    • TALEN-mediated precise genome modification by homologous recombination in zebrafish
    • Zu, Y, Tong, X, Wang, Z, Liu, D, Pan, R, Li, Z, et al. (2013). TALEN-mediated precise genome modification by homologous recombination in zebrafish. Nat Methods 10: 329-331
    • (2013) Nat Methods , vol.10 , pp. 329-331
    • Zu, Y.1    Tong, X.2    Wang, Z.3    Liu, D.4    Pan, R.5    Li, Z.6
  • 8
    • 84875193432 scopus 로고    scopus 로고
    • RNA guides genome engineering
    • Mussolino, C and Cathomen, T. (2013). RNA guides genome engineering. Nat Biotechnol 31: 208-209
    • (2013) Nat Biotechnol , vol.31 , pp. 208-209
    • Mussolino, C.1    Cathomen, T.2
  • 9
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • Deltcheva, E, Chylinski, K, Sharma, CM, Gonzales, K, Chao, Y, Pirzada, ZA, et al. (2011). CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471: 602-607
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1    Chylinski, K.2    Sharma, C.M.3    Gonzales, K.4    Chao, Y.5    Pirzada, Z.A.6
  • 10
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L, Ran, FA, Cox, D, Lin, S, Barretto, R, Habib, N, et al. (2013). Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819-823
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5    Habib, N.6
  • 11
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang, W, Bikard, D, Cox, D, Zhang, F and Marraffini, LA. (2013). RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol 31: 233-239
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 15
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica, FJ, Díez-Villaseñor, C, García-Martínez, J and Almendros, C. (2009). Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155 (Pt 3): 733-740
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Almendros, C.4
  • 16
  • 17
    • 84908508061 scopus 로고    scopus 로고
    • Structural basis of PAMdependent target DNA recognition by the Cas9 endonuclease
    • Anders, C, Niewoehner, O, Duerst, A and Jinek, M. (2014). Structural basis of PAMdependent target DNA recognition by the Cas9 endonuclease. Nature 513: 569-573
    • (2014) Nature , vol.513 , pp. 569-573
    • Anders, C.1    Niewoehner, O.2    Duerst, A.3    Jinek, M.4
  • 18
    • 84892804564 scopus 로고    scopus 로고
    • Molecular mechanisms of CRISPRmediated microbial immunity
    • Gasiunas, G, Sinkunas, T and Siksnys, V. (2014). Molecular mechanisms of CRISPRmediated microbial immunity. Cell Mol Life Sci 71: 449-465
    • (2014) Cell Mol Life Sci , vol.71 , pp. 449-465
    • Gasiunas, G.1    Sinkunas, T.2    Siksnys, V.3
  • 19
    • 84940924686 scopus 로고    scopus 로고
    • Proven and novel strategies for efficient editing of the human genome
    • Mussolino, C, Mlambo, T and Cathomen, T. (2015). Proven and novel strategies for efficient editing of the human genome. Curr Opinion Pharmacol 24: 105-112
    • (2015) Curr Opinion Pharmacol , vol.24 , pp. 105-112
    • Mussolino, C.1    Mlambo, T.2    Cathomen, T.3
  • 20
    • 84884663630 scopus 로고    scopus 로고
    • Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis
    • Hou, Z, Zhang, Y, Propson, NE, Howden, SE, Chu, LF, Sontheimer, EJ, et al. (2013). Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis. Proc Natl Acad Sci USA 110: 15644-15649
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 15644-15649
    • Hou, Z.1    Zhang, Y.2    Propson, N.E.3    Howden, S.E.4    Chu, L.F.5    Sontheimer, E.J.6
  • 22
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-Target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu, Y, Foden, JA, Khayter, C, Maeder, ML, Reyon, D, Joung, JK, et al. (2013). High-frequency off-Target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31: 822-826
    • (2013) Nat Biotechnol , vol.31 , pp. 822-826
    • Fu, Y.1    Foden, J.A.2    Khayter, C.3    Maeder, M.L.4    Reyon, D.5    Joung, J.K.6
  • 23
    • 84938739634 scopus 로고    scopus 로고
    • Measuring and reducing off-Target activities of programmable nucleases including CRISPR-Cas9
    • Koo, T, Lee, J and Kim, JS. (2015). Measuring and reducing off-Target activities of programmable nucleases including CRISPR-Cas9. Mol Cells 38: 475-481
    • (2015) Mol Cells , vol.38 , pp. 475-481
    • Koo, T.1    Lee, J.2    Kim, J.S.3
  • 24
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • Semenova, E, Jore, MM, Datsenko, KA, Semenova, A, Westra, ER, Wanner, B, et al. (2011). Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci USA 108: 10098-10103
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10098-10103
    • Semenova, E.1    Jore, M.M.2    Datsenko, K.A.3    Semenova, A.4    Westra, E.R.5    Wanner, B.6
  • 25
    • 80053169737 scopus 로고    scopus 로고
    • Structures of the RNA-guided surveillance complex from a bacterial immune system
    • Wiedenheft, B, Lander, GC, Zhou, K, Jore, MM, Brouns, SJ, van der Oost, J, et al. (2011). Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 477: 486-489
    • (2011) Nature , vol.477 , pp. 486-489
    • Wiedenheft, B.1    Lander, G.C.2    Zhou, K.3    Jore, M.M.4    Brouns, S.J.5    Van Der Oost, J.6
  • 26
    • 84896929630 scopus 로고    scopus 로고
    • Improving CRISPR-Cas nuclease specificity using truncated guide RNAs
    • Fu, Y, Sander, JD, Reyon, D, Cascio, VM and Joung, JK. (2014). Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat Biotechnol 32: 279-284
    • (2014) Nat Biotechnol , vol.32 , pp. 279-284
    • Fu, Y.1    Sander, J.D.2    Reyon, D.3    Cascio, V.M.4    Joung, J.K.5
  • 27
    • 84897954175 scopus 로고    scopus 로고
    • Efficient genome modification by CRISPR-Cas9 nickase with minimal off-Target effects
    • Shen, B, Zhang, W, Zhang, J, Zhou, J, Wang, J, Chen, L, et al. (2014). Efficient genome modification by CRISPR-Cas9 nickase with minimal off-Target effects. Nat Methods 11: 399-402
    • (2014) Nat Methods , vol.11 , pp. 399-402
    • Shen, B.1    Zhang, W.2    Zhang, J.3    Zhou, J.4    Wang, J.5    Chen, L.6
  • 28
    • 84902204289 scopus 로고    scopus 로고
    • Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing
    • Tsai, SQ, Wyvekens, N, Khayter, C, Foden, JA, Thapar, V, Reyon, D, et al. (2014). Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing. Nat Biotechnol 32: 569-576
    • (2014) Nat Biotechnol , vol.32 , pp. 569-576
    • Tsai, S.Q.1    Wyvekens, N.2    Khayter, C.3    Foden, J.A.4    Thapar, V.5    Reyon, D.6
  • 29
  • 30
    • 84864085433 scopus 로고    scopus 로고
    • Cleavage of phage DNA by the Streptococcus thermophilus CRISPR3-Cas system
    • Magadán, AH, Dupuis, MÈ, Villion, M and Moineau, S. (2012). Cleavage of phage DNA by the Streptococcus thermophilus CRISPR3-Cas system. PLoS One 7: e40913
    • (2012) PLoS One , vol.7 , pp. e40913
    • Magadán, A.H.1    Dupuis, M.E.2    Villion, M.3    Moineau, S.4
  • 31
    • 84928337961 scopus 로고    scopus 로고
    • Targeted gene editing by transfection of in vitro reconstituted Streptococcus thermophilus Cas9 nuclease complex
    • Glemzaite, M, Balciunaite, E, Karvelis, T, Gasiunas, G, Grusyte, MM, Alzbutas, G, et al. (2015). Targeted gene editing by transfection of in vitro reconstituted Streptococcus thermophilus Cas9 nuclease complex. RNA Biol 12: 1-4
    • (2015) RNA Biol , vol.12 , pp. 1-4
    • Glemzaite, M.1    Balciunaite, E.2    Karvelis, T.3    Gasiunas, G.4    Grusyte, M.M.5    Alzbutas, G.6
  • 32
    • 84925595944 scopus 로고    scopus 로고
    • Efficient genome engineering in eukaryotes using Cas9 from Streptococcus thermophilus
    • Xu, K, Ren, C, Liu, Z, Zhang, T, Zhang, T, Li, D, et al. (2015). Efficient genome engineering in eukaryotes using Cas9 from Streptococcus thermophilus. Cell Mol Life Sci 72: 383-399
    • (2015) Cell Mol Life Sci , vol.72 , pp. 383-399
    • Xu, K.1    Ren, C.2    Liu, Z.3    Zhang, T.4    Zhang, T.5    Li, D.6
  • 33
    • 80053039555 scopus 로고    scopus 로고
    • A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity
    • Mussolino, C, Morbitzer, R, Lütge, F, Dannemann, N, Lahaye, T and Cathomen, T. (2011). A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity. Nucleic Acids Res 39: 9283-9293
    • (2011) Nucleic Acids Res , vol.39 , pp. 9283-9293
    • Mussolino, C.1    Morbitzer, R.2    Lütge, F.3    Dannemann, N.4    Lahaye, T.5    Cathomen, T.6
  • 34
    • 47349097567 scopus 로고    scopus 로고
    • Rapid open-source engineering of customized zincfinger nucleases for highly efficient gene modification
    • Maeder, ML, Thibodeau-Beganny, S, Osiak, A, Wright, DA, Anthony, RM, Eichtinger, M, et al. (2008). Rapid open-source engineering of customized zincfinger nucleases for highly efficient gene modification. Mol Cell 31: 294-301
    • (2008) Mol Cell , vol.31 , pp. 294-301
    • Maeder, M.L.1    Thibodeau-Beganny, S.2    Osiak, A.3    Wright, D.A.4    Anthony, R.M.5    Eichtinger, M.6
  • 35
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M, Chylinski, K, Fonfara, I, Hauer, M, Doudna, JA and Charpentier, E. (2012). A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816-821
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 36
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas, G, Barrangou, R, Horvath, P and Siksnys, V. (2012). Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA 109: E2579-E2586
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. E2579-E2586
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 37
    • 84903212620 scopus 로고    scopus 로고
    • TALENs facilitate targeted genome editing in human cells with high specificity and low cytotoxicity
    • Mussolino, C, Alzubi, J, Fine, EJ, Morbitzer, R, Cradick, TJ, Lahaye, T, et al. (2014). TALENs facilitate targeted genome editing in human cells with high specificity and low cytotoxicity. Nucleic Acids Res 42: 6762-6773
    • (2014) Nucleic Acids Res , vol.42 , pp. 6762-6773
    • Mussolino, C.1    Alzubi, J.2    Fine, E.J.3    Morbitzer, R.4    Cradick, T.J.5    Lahaye, T.6
  • 38
    • 38849103093 scopus 로고    scopus 로고
    • DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases
    • Cornu, TI, Thibodeau-Beganny, S, Guhl, E, Alwin, S, Eichtinger, M, Joung, JK, et al. (2008). DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases. Mol Ther 16: 352-358
    • (2008) Mol Ther , vol.16 , pp. 352-358
    • Cornu, T.I.1    Thibodeau-Beganny, S.2    Guhl, E.3    Alwin, S.4    Eichtinger, M.5    Joung, J.K.6
  • 40
    • 84901838361 scopus 로고    scopus 로고
    • Cell-penetrating peptide-mediated delivery of TALEN proteins via bioconjugation for genome engineering
    • Liu, J, Gaj, T, Patterson, JT, Sirk, SJ and Barbas, CF 3rd. (2014). Cell-penetrating peptide-mediated delivery of TALEN proteins via bioconjugation for genome engineering. PLoS One 9: e85755
    • (2014) PLoS One , vol.9 , pp. e85755
    • Liu, J.1    Gaj, T.2    Patterson, J.T.3    Sirk, S.J.4    Barbas, C.F.5
  • 41
    • 84864439768 scopus 로고    scopus 로고
    • Targeted gene knockout by direct delivery of zinc-finger nuclease proteins
    • Gaj, T, Guo, J, Kato, Y, Sirk, SJ and Barbas, CF 3rd. (2012). Targeted gene knockout by direct delivery of zinc-finger nuclease proteins. Nat Methods 9: 805-807
    • (2012) Nat Methods , vol.9 , pp. 805-807
    • Gaj, T.1    Guo, J.2    Kato, Y.3    Sirk, S.J.4    Barbas, C.F.5
  • 42
    • 84901834420 scopus 로고    scopus 로고
    • Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
    • Kim, S, Kim, D, Cho, SW, Kim, J and Kim, JS. (2014). Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Res 24: 1012-1019
    • (2014) Genome Res , vol.24 , pp. 1012-1019
    • Kim, S.1    Kim, D.2    Cho, S.W.3    Kim, J.4    Kim, J.S.5
  • 43
    • 84921598229 scopus 로고    scopus 로고
    • COSMID: A web-based tool for identifying and validating CRISPR/Cas off-Target sites
    • Cradick, TJ, Qiu, P, Lee, CM, Fine, EJ and Bao, G. (2014). COSMID: a web-based tool for identifying and validating CRISPR/Cas off-Target sites. Mol Ther Nucleic Acids 3: e214
    • (2014) Mol Ther Nucleic Acids , vol.3 , pp. e214
    • Cradick, T.J.1    Qiu, P.2    Lee, C.M.3    Fine, E.J.4    Bao, G.5
  • 44
    • 84902187031 scopus 로고    scopus 로고
    • Translating the genomic revolution-Targeted genome editing in primates
    • Cathomen, T and Ehl, S. (2014). Translating the genomic revolution-Targeted genome editing in primates. N Engl J Med 370: 2342-2345
    • (2014) N Engl J Med , vol.370 , pp. 2342-2345
    • Cathomen, T.1    Ehl, S.2
  • 45
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPRCas9 for genome engineering
    • Hsu, PD, Lander, ES and Zhang, F. (2014). Development and applications of CRISPRCas9 for genome engineering. Cell 157: 1262-1278
    • (2014) Cell , vol.157 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 46
    • 84913594397 scopus 로고    scopus 로고
    • Genome editing the new frontier of genome engineering with CRISPR-Cas9
    • Doudna, JA and Charpentier, E. (2014). Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 346: 1258096
    • (2014) Science , vol.346 , pp. 1258096
    • Doudna, J.A.1    Charpentier, E.2
  • 47
  • 48
    • 84903138336 scopus 로고    scopus 로고
    • CRISPR/Cas9 systems have off-Target activity with insertions or deletions between target DNA and guide RNA sequences
    • Lin, Y, Cradick, TJ, Brown, MT, Deshmukh, H, Ranjan, P, Sarode, N, et al. (2014). CRISPR/Cas9 systems have off-Target activity with insertions or deletions between target DNA and guide RNA sequences. Nucleic Acids Res 42: 7473-7485
    • (2014) Nucleic Acids Res , vol.42 , pp. 7473-7485
    • Lin, Y.1    Cradick, T.J.2    Brown, M.T.3    Deshmukh, H.4    Ranjan, P.5    Sarode, N.6
  • 50
    • 84902095352 scopus 로고    scopus 로고
    • Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells
    • Wu, X, Scott, DA, Kriz, AJ, Chiu, AC, Hsu, PD, Dadon, DB, et al. (2014). Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells. Nat Biotechnol 32: 670-676
    • (2014) Nat Biotechnol , vol.32 , pp. 670-676
    • Wu, X.1    Scott, D.A.2    Kriz, A.J.3    Chiu, A.C.4    Hsu, P.D.5    Dadon, D.B.6
  • 52
    • 84895832944 scopus 로고    scopus 로고
    • Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems
    • Fonfara, I, Le Rhun, A, Chylinski, K, Makarova, KS, Lécrivain, AL, Bzdrenga, J, et al. (2014). Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems. Nucleic Acids Res 42: 2577-2590
    • (2014) Nucleic Acids Res , vol.42 , pp. 2577-2590
    • Fonfara, I.1    Le Rhun, A.2    Chylinski, K.3    Makarova, K.S.4    Lécrivain, A.L.5    Bzdrenga, J.6
  • 56
    • 84924666891 scopus 로고    scopus 로고
    • Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases
    • Vouillot, L, Thélie, A and Pollet, N (2015). Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases. G3 (Bethesda) 5: 407-415
    • (2015) G3 (Bethesda , vol.5 , pp. 407-415
    • Vouillot, L.1    Thélie, A.2    Pollet, N.3


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