-
1
-
-
0343940561
-
Ferdinand Cohn, a founder of modern microbiology
-
Drews G. 1999. Ferdinand Cohn, a founder of modern microbiology. ASM News 65:547.
-
(1999)
ASM News
, vol.65
, pp. 547
-
-
Drews, G.1
-
2
-
-
0028055018
-
The winds of (evolutionary) change: breathing new life into microbiology
-
Olsen GJ, Woese CR, Overbeek R. 1994. The winds of (evolutionary) change: breathing new life into microbiology. J Bacteriol 176:1-6.
-
(1994)
J Bacteriol
, vol.176
, pp. 1-6
-
-
Olsen, G.J.1
Woese, C.R.2
Overbeek, R.3
-
4
-
-
0023184331
-
Bacterial evolution
-
Woese CR. 1987. Bacterial evolution. Microbiol Rev 51:221-271.
-
(1987)
Microbiol Rev
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
5
-
-
0025300402
-
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese CR, Kandler O, Wheelis ML. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576-4579.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
6
-
-
0027998116
-
Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
-
Ludwig W, Schleifer KH. 1994. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev 15:155-173.
-
(1994)
FEMS Microbiol Rev
, vol.15
, pp. 155-173
-
-
Ludwig, W.1
Schleifer, K.H.2
-
7
-
-
0031895203
-
Bacterial phylogeny based on comparative sequence analysis
-
Ludwig W, Strunk O, Klugbauer S, Klugbauer N, Weizenegger M, Neumaier J, Bachleitner M, Schleifer KH. 1998. Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19:554-568.
-
(1998)
Electrophoresis
, vol.19
, pp. 554-568
-
-
Ludwig, W.1
Strunk, O.2
Klugbauer, S.3
Klugbauer, N.4
Weizenegger, M.5
Neumaier, J.6
Bachleitner, M.7
Schleifer, K.H.8
-
8
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV. 2001. Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol Biol 1:8. doi: 10.1186/1471-2148-1-8.
-
(2001)
BMC Evol Biol
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
9
-
-
84861219308
-
Phylogenomics of prokaryotic ribosomal proteins
-
Yutin N, Puigbo P, Koonin EV, Wolf YI. 2012. Phylogenomics of prokaryotic ribosomal proteins. PLoS One 7:e36972. doi: 10.1371/journal .pone.0036972.
-
(2012)
PLoS One
, vol.7
, pp. e36972
-
-
Yutin, N.1
Puigbo, P.2
Koonin, E.V.3
Wolf, Y.I.4
-
10
-
-
33744927902
-
The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
-
Wagner M, Horn M. 2006. The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr Opin Biotechnol 17:241-249.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 241-249
-
-
Wagner, M.1
Horn, M.2
-
11
-
-
0033935581
-
The natural evolutionary relationships among prokaryotes
-
Gupta RS. 2000. The natural evolutionary relationships among prokaryotes. Crit Rev Microbiol 26:111-131.
-
(2000)
Crit Rev Microbiol
, vol.26
, pp. 111-131
-
-
Gupta, R.S.1
-
13
-
-
12344338577
-
Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics
-
Mira A, Pushker R, Legault BA, Moreira D, Rodriguez-Valera F. 2004. Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics. BMC Evol Biol 4:50. doi: 10.1186/1471-2148-4-50.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 50
-
-
Mira, A.1
Pushker, R.2
Legault, B.A.3
Moreira, D.4
Rodriguez-Valera, F.5
-
14
-
-
65249126970
-
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
-
Zhaxybayeva O, Swithers KS, Lapierre P, Fournier GP, Bickhart DM, DeBoy RT, Nelson KE, Nesbo CL, Doolittle WF, Gogarten JP, Noll KM. 2009. On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proc Natl Acad Sci USA 106:5865-5870.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5865-5870
-
-
Zhaxybayeva, O.1
Swithers, K.S.2
Lapierre, P.3
Fournier, G.P.4
Bickhart, D.M.5
DeBoy, R.T.6
Nelson, K.E.7
Nesbo, C.L.8
Doolittle, W.F.9
Gogarten, J.P.10
Noll, K.M.11
-
15
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P. 2006. Toward automatic reconstruction of a highly resolved tree of life. Science 311:1283-1287.
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
16
-
-
79959655385
-
Telling the whole story in a 10,000-genome world
-
Beiko RG. 2011. Telling the whole story in a 10,000-genome world. Biol Direct 6:34. doi: 10.1186/1745-6150-6-34.
-
(2011)
Biol Direct
, vol.6
, pp. 34
-
-
Beiko, R.G.1
-
17
-
-
57449094163
-
Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1
-
Saw JH, Mountain BW, Feng L, Omelchenko MV, Hou S, Saito JA, Stott MB, Li D, Zhao G, Wu J, Galperin MY, Koonin EV, Makarova KS, Wolf YI, Rigden DJ, Dunfield PF, Wang L, Alam M. 2008. Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1. Genome Biol 9:R161.
-
(2008)
Genome Biol
, vol.9
, pp. R161
-
-
Saw, J.H.1
Mountain, B.W.2
Feng, L.3
Omelchenko, M.V.4
Hou, S.5
Saito, J.A.6
Stott, M.B.7
Li, D.8
Zhao, G.9
Wu, J.10
Galperin, M.Y.11
Koonin, E.V.12
Makarova, K.S.13
Wolf, Y.I.14
Rigden, D.J.15
Dunfield, P.F.16
Wang, L.17
Alam, M.18
-
18
-
-
84885176098
-
An genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia
-
9 July
-
Yutin N, Galperin MY. 9 July 2013. An genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. Environ Microbiol 15:2631-2641.
-
(2013)
Environ Microbiol
, vol.15
, pp. 2631-2641
-
-
Yutin, N.1
Galperin, M.Y.2
-
19
-
-
0031794743
-
Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
-
Gupta RS. 1998. Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol Mol Biol Rev 62:1435-1491.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 1435-1491
-
-
Gupta, R.S.1
-
20
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin S, Mrazek J, Campbell AM. 1997. Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol 179:3899-3913.
-
(1997)
J Bacteriol
, vol.179
, pp. 3899-3913
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
21
-
-
34347209094
-
Simple sequence repeats in prokaryotic genomes
-
Mrazek J, Guo X, Shah A. 2007. Simple sequence repeats in prokaryotic genomes. Proc Natl Acad Sci USA 104:8472-8477.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8472-8477
-
-
Mrazek, J.1
Guo, X.2
Shah, A.3
-
22
-
-
0032426005
-
Comparative DNA analysis across diverse genomes
-
Karlin S, Campbell AM, Mrazek J. 1998. Comparative DNA analysis across diverse genomes. Annu Rev Genet 32:185-225.
-
(1998)
Annu Rev Genet
, vol.32
, pp. 185-225
-
-
Karlin, S.1
Campbell, A.M.2
Mrazek, J.3
-
23
-
-
77956988767
-
A phylum level perspective on bacterial cell envelope architecture
-
Sutcliffe IC. 2010. A phylum level perspective on bacterial cell envelope architecture. Trends Microbiol 18:464-470.
-
(2010)
Trends Microbiol
, vol.18
, pp. 464-470
-
-
Sutcliffe, I.C.1
-
24
-
-
0036155782
-
The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
-
Cavalier-Smith T. 2002. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int J Syst Evol Microbiol 52:7-76.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 7-76
-
-
Cavalier-Smith, T.1
-
25
-
-
33846349924
-
Rooting the tree of life by transition analyses
-
Cavalier-Smith T. 2006. Rooting the tree of life by transition analyses. Biol Direct 1:19. doi: 10.1186/1745-6150-1-19.
-
(2006)
Biol Direct
, vol.1
, pp. 19
-
-
Cavalier-Smith, T.1
-
26
-
-
0032530772
-
Default taxonomy: Ernst Mayr's view of the microbial world
-
Woese CR. 1998. Default taxonomy: Ernst Mayr's view of the microbial world. Proc Natl Acad Sci USA 95:11043-11046.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 11043-11046
-
-
Woese, C.R.1
-
27
-
-
0031023012
-
Phylogenetic analysis of mycoplasmas based on Hsp70 sequences: cloning of the dnaK (hsp70) gene region of Mycoplasma capricolum
-
Falah M, Gupta RS. 1997. Phylogenetic analysis of mycoplasmas based on Hsp70 sequences: cloning of the dnaK (hsp70) gene region of Mycoplasma capricolum. Int J Syst Bacteriol 47:38-45.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 38-45
-
-
Falah, M.1
Gupta, R.S.2
-
28
-
-
2942676984
-
Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data
-
Wolf M, Muller T, Dandekar T, Pollack JD. 2004. Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data. Int J Syst Evol Microbiol 54:871-875.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 871-875
-
-
Wolf, M.1
Muller, T.2
Dandekar, T.3
Pollack, J.D.4
-
29
-
-
79958052441
-
The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of firmicutes and the organism's intracellular adaptations
-
Ogawa Y, Ooka T, Shi F, Ogura Y, Nakayama K, Hayashi T, Shimoji Y. 2011. The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of firmicutes and the organism's intracellular adaptations. J Bacteriol 193:2959-2971.
-
(2011)
J Bacteriol
, vol.193
, pp. 2959-2971
-
-
Ogawa, Y.1
Ooka, T.2
Shi, F.3
Ogura, Y.4
Nakayama, K.5
Hayashi, T.6
Shimoji, Y.7
-
30
-
-
26244468100
-
Phylogenetic positions of 'Candidatus Phytoplasma asteris' and Spiroplasma kunkelii as inferred from multiple sets of concatenated core housekeeping proteins
-
Zhao Y, Davis RE, Lee IM. 2005. Phylogenetic positions of 'Candidatus Phytoplasma asteris' and Spiroplasma kunkelii as inferred from multiple sets of concatenated core housekeeping proteins. Int J Syst Evol Microbiol 55:2131-2141.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2131-2141
-
-
Zhao, Y.1
Davis, R.E.2
Lee, I.M.3
-
31
-
-
84885190713
-
The Bacteria: phylum Firmicutes: class Mollicutes
-
Garrity GM (ed)
-
Garrity GM, Lilburn TG, Cole JR, Harrison SH, Euzeby J, Tindall BJ. 2007. The Bacteria: phylum Firmicutes: class Mollicutes, p 317-332. In Garrity GM (ed), The Taxonomic Outline of Bacteria and Archaea, release 7.7, http://www.taxonomicoutline.org/.
-
(2007)
The Taxonomic Outline of Bacteria and Archaea, release 7.7
, pp. 317-332
-
-
Garrity, G.M.1
Lilburn, T.G.2
Cole, J.R.3
Harrison, S.H.4
Euzeby, J.5
Tindall, B.J.6
-
32
-
-
77951246352
-
Revised road map to the phylum Firmicutes
-
De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (ed), 2nd ed, The Firmicutes. Springer, New York, NY
-
Ludwig W, Schleifer K-H, Whitman WB. 2009. Revised road map to the phylum Firmicutes, p 1-8. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (ed), Bergey's Manual of Systematic Bacteriology, 2nd ed, vol 3. The Firmicutes. Springer, New York, NY.
-
(2009)
Bergey's Manual of Systematic Bacteriology
, vol.3
, pp. 1-8
-
-
Ludwig, W.1
Schleifer, K.-H.2
Whitman, W.B.3
-
33
-
-
0842323728
-
Erysipelothrix inopinata sp. nov., isolated in the course of sterile filtration of vegetable peptone broth, and description of Erysipelotrichaceae fam. nov
-
Verbarg S, Rheims H, Emus S, Fruhling A, Kroppenstedt RM, Stackebrandt E, Schumann P. 2004. Erysipelothrix inopinata sp. nov., isolated in the course of sterile filtration of vegetable peptone broth, and description of Erysipelotrichaceae fam. nov. Int J Syst Evol Microbiol 54:221-225.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 221-225
-
-
Verbarg, S.1
Rheims, H.2
Emus, S.3
Fruhling, A.4
Kroppenstedt, R.M.5
Stackebrandt, E.6
Schumann, P.7
-
34
-
-
33846177613
-
Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov
-
Sokolova T, Hanel J, Onyenwoke RU, Reysenbach AL, Banta A, Geyer R, Gonzalez JM, Whitman WB, Wiegel J. 2007. Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov. Extremophiles 11:145-157.
-
(2007)
Extremophiles
, vol.11
, pp. 145-157
-
-
Sokolova, T.1
Hanel, J.2
Onyenwoke, R.U.3
Reysenbach, A.L.4
Banta, A.5
Geyer, R.6
Gonzalez, J.M.7
Whitman, W.B.8
Wiegel, J.9
-
35
-
-
77953297034
-
Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes
-
Marchandin H, Teyssier C, Campos J, Jean-Pierre H, Roger F, Gay B, Carlier JP, Jumas-Bilak E. 2010. Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes. Int J Syst Evol Microbiol 60:1271-1279.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 1271-1279
-
-
Marchandin, H.1
Teyssier, C.2
Campos, J.3
Jean-Pierre, H.4
Roger, F.5
Gay, B.6
Carlier, J.P.7
Jumas-Bilak, E.8
-
36
-
-
80052294350
-
Peptidoglycan remodeling and conversion of an inner membrane into an outer membrane during sporulation
-
Tocheva EI, Matson EG, Morris DM, Moussavi F, Leadbetter JR, Jensen GJ. 2011. Peptidoglycan remodeling and conversion of an inner membrane into an outer membrane during sporulation. Cell 146:799-812.
-
(2011)
Cell
, vol.146
, pp. 799-812
-
-
Tocheva, E.I.1
Matson, E.G.2
Morris, D.M.3
Moussavi, F.4
Leadbetter, J.R.5
Jensen, G.J.6
-
37
-
-
84859139303
-
Complete genome sequence of Clostridium clariflavum DSM 19732
-
Izquierdo JA, Goodwin L, 'Davenport KW, Teshima H, Bruce D, Detter C, Tapia R, Han S, Land M, Hauser L, Jeffries CD, Han J, Pitluck S, Nolan M, Chen A, Huntemann M, Mavromatis K, Mikhailova N, Liolios K, Woyke T, Lynd LR. 2012. Complete genome sequence of Clostridium clariflavum DSM 19732. Stand Genomic Sci 6:104-115.
-
(2012)
Stand Genomic Sci
, vol.6
, pp. 104-115
-
-
Izquierdo, J.A.1
Goodwin, L.2
'Davenport, K.W.3
Teshima, H.4
Bruce, D.5
Detter, C.6
Tapia, R.7
Han, S.8
Land, M.9
Hauser, L.10
Jeffries, C.D.11
Han, J.12
Pitluck, S.13
Nolan, M.14
Chen, A.15
Huntemann, M.16
Mavromatis, K.17
Mikhailova, N.18
Liolios, K.19
Woyke, T.20
Lynd, L.R.21
more..
-
38
-
-
0001375592
-
Sporomusa, a new genus of gram-negative anaerobic bacteria including Sporomusa sphaeroides spec. nov. and Sporomusa ovata spec. nov
-
Möller B, Ossmer R, Howard BH, Gottschalk G, Hippe H. 1984. Sporomusa, a new genus of gram-negative anaerobic bacteria including Sporomusa sphaeroides spec. nov. and Sporomusa ovata spec. nov. Arch Microbiol 139:388-396.
-
(1984)
Arch Microbiol
, vol.139
, pp. 388-396
-
-
Möller, B.1
Ossmer, R.2
Howard, B.H.3
Gottschalk, G.4
Hippe, H.5
-
39
-
-
0025886921
-
Acetonema longum gen. nov. sp. nov., an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis
-
Kane MD, Breznak JA. 1991. Acetonema longum gen. nov. sp. nov., an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis. Arch Microbiol 156:91-98.
-
(1991)
Arch Microbiol
, vol.156
, pp. 91-98
-
-
Kane, M.D.1
Breznak, J.A.2
-
40
-
-
0028126829
-
The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations
-
Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J, Garcia P, Cai J, Hippe H, Farrow JA. 1994. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44:812-826.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.9
-
41
-
-
84856562355
-
The NCBI Taxonomy database
-
Federhen S. 2012. The NCBI Taxonomy database. Nucleic Acids Res 40:D136-D143.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D136-D143
-
-
Federhen, S.1
-
42
-
-
79954466817
-
Release LTPs104 of the All-Species Living Tree
-
Munoz R, Yarza P, Ludwig W, Euzéby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R. 2011. Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol 34:169-170.
-
(2011)
Syst Appl Microbiol
, vol.34
, pp. 169-170
-
-
Munoz, R.1
Yarza, P.2
Ludwig, W.3
Euzéby, J.4
Amann, R.5
Schleifer, K.H.6
Glockner, F.O.7
Rossello-Mora, R.8
-
43
-
-
5444263706
-
Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch (Firmicutes)
-
Onyenwoke RU, Brill JA, Farahi K, Wiegel J. 2004. Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch (Firmicutes). Arch Microbiol 182:182-192.
-
(2004)
Arch Microbiol
, vol.182
, pp. 182-192
-
-
Onyenwoke, R.U.1
Brill, J.A.2
Farahi, K.3
Wiegel, J.4
-
44
-
-
84867988931
-
Genomic determinants of sporulation in Bacilli and Clostridia:towards the minimal set of sporulation-specific genes
-
Galperin MY, Mekhedov SL, Puigbo P, Smirnov S, Wolf YI, Rigden DJ. 2012. Genomic determinants of sporulation in Bacilli and Clostridia:towards the minimal set of sporulation-specific genes. Environ Microbiol 14:2870-2890.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2870-2890
-
-
Galperin, M.Y.1
Mekhedov, S.L.2
Puigbo, P.3
Smirnov, S.4
Wolf, Y.I.5
Rigden, D.J.6
-
45
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'Haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA. 2009. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462:1056-1060.
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
Tindall, B.J.10
Hooper, S.D.11
Pati, A.12
Lykidis, A.13
Spring, S.14
Anderson, I.J.15
D'Haeseleer, P.16
Zemla, A.17
Singer, M.18
Lapidus, A.19
Nolan, M.20
Copeland, A.21
Han, C.22
Chen, F.23
Cheng, J.F.24
Lucas, S.25
Kerfeld, C.26
Lang, E.27
Gronow, S.28
Chain, P.29
Bruce, D.30
Rubin, E.M.31
Kyrpides, N.C.32
Klenk, H.P.33
Eisen, J.A.34
more..
-
46
-
-
77956533047
-
Hierarchical evolution of the bacterial sporulation network
-
de Hoon MJ, Eichenberger P, Vitkup D. 2010. Hierarchical evolution of the bacterial sporulation network. Curr Biol 20:R735-R745.
-
(2010)
Curr Biol
, vol.20
, pp. R735-R745
-
-
de Hoon, M.J.1
Eichenberger, P.2
Vitkup, D.3
-
47
-
-
0002572455
-
A gene odyssey: Exploring the genomes of endospore-forming bacteria
-
Sonenshein AL, Hoch JA, Losick R (ed), ASM Press, Washington, DC
-
Stragier P. 2002. A gene odyssey: Exploring the genomes of endospore-forming bacteria, p 519-526. In Sonenshein AL, Hoch JA, Losick R (ed), Bacillus subtilis and Its Closest Relatives: From Genes to Cells. ASM Press, Washington, DC.
-
(2002)
Bacillus subtilis and Its Closest Relatives: From Genes to Cells
, pp. 519-526
-
-
Stragier, P.1
-
48
-
-
33846158515
-
Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction
-
Zavarzina DG, Sokolova TG, Tourova TP, Chernyh NA, Kostrikina NA, Bonch-Osmolovskaya EA. 2007. Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction. Extremophiles 11:1-7.
-
(2007)
Extremophiles
, vol.11
, pp. 1-7
-
-
Zavarzina, D.G.1
Sokolova, T.G.2
Tourova, T.P.3
Chernyh, N.A.4
Kostrikina, N.A.5
Bonch-Osmolovskaya, E.A.6
-
49
-
-
26244453970
-
Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area
-
Sokolova TG, Kostrikina NA, Chernyh NA, Kolganova TV, Tourova TP, Bonch-Osmolovskaya EA. 2005. Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area. Int J Syst Evol Microbiol 55:2069-2073.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2069-2073
-
-
Sokolova, T.G.1
Kostrikina, N.A.2
Chernyh, N.A.3
Kolganova, T.V.4
Tourova, T.P.5
Bonch-Osmolovskaya, E.A.6
-
50
-
-
77955297300
-
Complete genome sequence of the electricity-producing 'Thermincola potens' strain JR
-
Byrne-Bailey KG, Wrighton KC, Melnyk RA, Agbo P, Hazen TC, Coates JD. 2010. Complete genome sequence of the electricity-producing 'Thermincola potens' strain JR. J Bacteriol 192:4078-4079.
-
(2010)
J Bacteriol
, vol.192
, pp. 4078-4079
-
-
Byrne-Bailey, K.G.1
Wrighton, K.C.2
Melnyk, R.A.3
Agbo, P.4
Hazen, T.C.5
Coates, J.D.6
-
51
-
-
83155163702
-
Evidence for direct electron transfer by a gram-positive bacterium isolated from a microbial fuel cell
-
Wrighton KC, Thrash JC, Melnyk RA, Bigi JP, Byrne-Bailey KG, Remis JP, Schichnes D, Auer M, Chang CJ, Coates JD. 2011. Evidence for direct electron transfer by a gram-positive bacterium isolated from a microbial fuel cell. Appl Environ Microbiol 77:7633-7639.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7633-7639
-
-
Wrighton, K.C.1
Thrash, J.C.2
Melnyk, R.A.3
Bigi, J.P.4
Byrne-Bailey, K.G.5
Remis, J.P.6
Schichnes, D.7
Auer, M.8
Chang, C.J.9
Coates, J.D.10
-
52
-
-
84857127335
-
Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria
-
Carlson HK, Iavarone AT, Gorur A, Yeo BS, Tran R, Melnyk RA, Mathies RA, Auer M, Coates JD. 2012. Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria. Proc Natl Acad Sci USA 109:1702-1707.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 1702-1707
-
-
Carlson, H.K.1
Iavarone, A.T.2
Gorur, A.3
Yeo, B.S.4
Tran, R.5
Melnyk, R.A.6
Mathies, R.A.7
Auer, M.8
Coates, J.D.9
-
53
-
-
0345035304
-
A re-evaluation of the taxonomy of the genus Anaerovibrio, with the reclassification of Anaerovibrio glycerini as Anaerosinus glycerini gen. nov., comb. nov., and Anaerovibrio burkinabensis as Anaeroarcus burkinensis [corrig.] gen. nov., comb. nov
-
Strompl C, Tindall BJ, Jarvis GN, Lunsdorf H, Moore ER, Hippe H. 1999. A re-evaluation of the taxonomy of the genus Anaerovibrio, with the reclassification of Anaerovibrio glycerini as Anaerosinus glycerini gen. nov., comb. nov., and Anaerovibrio burkinabensis as Anaeroarcus burkinensis [corrig.] gen. nov., comb. nov. Int J Syst Bacteriol 49(Pt 4):1861-1872.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 1861-1872
-
-
Strompl, C.1
Tindall, B.J.2
Jarvis, G.N.3
Lunsdorf, H.4
Moore, E.R.5
Hippe, H.6
-
54
-
-
0023120473
-
Sporomusa paucivorans sp. nov., a methylotrophic bacterium that forms acetic acid from hydrogen and carbon dioxide
-
Hermann M, Popoff M-R, Senbald M. 1987. Sporomusa paucivorans sp. nov., a methylotrophic bacterium that forms acetic acid from hydrogen and carbon dioxide. Int J Syst Evol Microbiol 37:93-101.
-
(1987)
Int J Syst Evol Microbiol
, vol.37
, pp. 93-101
-
-
Hermann, M.1
Popoff, M.-R.2
Senbald, M.3
-
55
-
-
84859165788
-
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
-
Pagani I, Liolios K, Jansson J, Chen IM, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC. 2012. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 40:D571-D579.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D571-D579
-
-
Pagani, I.1
Liolios, K.2
Jansson, J.3
Chen, I.M.4
Smirnova, T.5
Nosrat, B.6
Markowitz, V.M.7
Kyrpides, N.C.8
-
56
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR. 2012. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res 40:D130-D135.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D130-D135
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
57
-
-
84868290458
-
Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr (VI) reduction
-
Bowen De León K, Young ML, Camilleri LB, Brown SD, Skerker JM, Deutschbauer AM, Arkin AP, Fields MW. 2012. Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr (VI) reduction. J Bacteriol 194:5456-5457.
-
(2012)
J Bacteriol
, vol.194
, pp. 5456-5457
-
-
Bowen De León, K.1
Young, M.L.2
Camilleri, L.B.3
Brown, S.D.4
Skerker, J.M.5
Deutschbauer, A.M.6
Arkin, A.P.7
Fields, M.W.8
-
58
-
-
84866358341
-
Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7
-
Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA, Jr., Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA. 2012. Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7. J Bacteriol 194:5147-5148.
-
(2012)
J Bacteriol
, vol.194
, pp. 5147-5148
-
-
Brown, S.D.1
Podar, M.2
Klingeman, D.M.3
Johnson, C.M.4
Yang, Z.K.5
Utturkar, S.M.6
Land, M.L.7
Mosher, J.J.8
Hurt, R.A.9
Phelps, T.J.10
Palumbo, A.V.11
Arkin, A.P.12
Hazen, T.C.13
Elias, D.A.14
-
59
-
-
9744277455
-
Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbonmonoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park
-
Sokolova TG, Gonzalez JM, Kostrikina NA, Chernyh NA, Slepova TV, Bonch-Osmolovskaya EA, Robb FT. 2004. Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbonmonoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park. Int J Syst Evol Microbiol 54:2353-2359.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 2353-2359
-
-
Sokolova, T.G.1
Gonzalez, J.M.2
Kostrikina, N.A.3
Chernyh, N.A.4
Slepova, T.V.5
Bonch-Osmolovskaya, E.A.6
Robb, F.T.7
-
61
-
-
33846075967
-
Evolutionary genomics of lactic acid bacteria
-
Makarova KS, Koonin EV. 2007. Evolutionary genomics of lactic acid bacteria. J Bacteriol 189:1199-1208.
-
(2007)
J Bacteriol
, vol.189
, pp. 1199-1208
-
-
Makarova, K.S.1
Koonin, E.V.2
-
62
-
-
49549088390
-
Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution
-
Rigden DJ, Galperin MY. 2008. Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution. Bioinformatics 24:1793-1797.
-
(2008)
Bioinformatics
, vol.24
, pp. 1793-1797
-
-
Rigden, D.J.1
Galperin, M.Y.2
-
64
-
-
34047126471
-
I will survive: DNA protection in bacterial spores
-
Setlow P. 2007. I will survive: DNA protection in bacterial spores. Trends Microbiol 15:172-180.
-
(2007)
Trends Microbiol
, vol.15
, pp. 172-180
-
-
Setlow, P.1
-
65
-
-
30444457865
-
The Bacillus subtilis spore coat provides 'eat resistance' during phagocytic predation by the protozoan Tetrahymena thermophila
-
Klobutcher LA, Ragkousi K, Setlow P. 2006. The Bacillus subtilis spore coat provides 'eat resistance' during phagocytic predation by the protozoan Tetrahymena thermophila. Proc Natl Acad Sci USA 103:165-170.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 165-170
-
-
Klobutcher, L.A.1
Ragkousi, K.2
Setlow, P.3
-
66
-
-
0035910123
-
Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge
-
Lu J, Nogi Y, Takami H. 2001. Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 205:291-297.
-
(2001)
FEMS Microbiol Lett
, vol.205
, pp. 291-297
-
-
Lu, J.1
Nogi, Y.2
Takami, H.3
-
67
-
-
0037106449
-
Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments
-
Takami H, Takaki Y, Uchiyama I. 2002. Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments. Nucleic Acids Res 30:3927-3935.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3927-3935
-
-
Takami, H.1
Takaki, Y.2
Uchiyama, I.3
-
68
-
-
12744268746
-
Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus
-
Takami H, Takaki Y, Chee GJ, Nishi S, Shimamura S, Suzuki H, Matsui S, Uchiyama I. 2004. Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. Nucleic Acids Res 32:6292-6303.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6292-6303
-
-
Takami, H.1
Takaki, Y.2
Chee, G.J.3
Nishi, S.4
Shimamura, S.5
Suzuki, H.6
Matsui, S.7
Uchiyama, I.8
-
69
-
-
53749096964
-
Environmental genomics reveals a singlespecies ecosystem deep within Earth
-
Chivian D, Brodie EL, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, Gihring TM, Lapidus A, Lin LH, Lowry SR, Moser DP, Richardson PM, Southam G, Wanger G, Pratt LM, Andersen GL, Hazen TC, Brockman FJ, Arkin AP, Onstott TC. 2008. Environmental genomics reveals a singlespecies ecosystem deep within Earth. Science 322:275-278.
-
(2008)
Science
, vol.322
, pp. 275-278
-
-
Chivian, D.1
Brodie, E.L.2
Alm, E.J.3
Culley, D.E.4
Dehal, P.S.5
DeSantis, T.Z.6
Gihring, T.M.7
Lapidus, A.8
Lin, L.H.9
Lowry, S.R.10
Moser, D.P.11
Richardson, P.M.12
Southam, G.13
Wanger, G.14
Pratt, L.M.15
Andersen, G.L.16
Hazen, T.C.17
Brockman, F.J.18
Arkin, A.P.19
Onstott, T.C.20
more..
-
70
-
-
0034327380
-
Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
-
Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, Fuji F, Hirama C, Nakamura Y, Ogasawara N, Kuhara S, Horikoshi K. 2000. Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. Nucleic Acids Res 28:4317-4331.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4317-4331
-
-
Takami, H.1
Nakasone, K.2
Takaki, Y.3
Maeno, G.4
Sasaki, R.5
Masui, N.6
Fuji, F.7
Hirama, C.8
Nakamura, Y.9
Ogasawara, N.10
Kuhara, S.11
Horikoshi, K.12
-
71
-
-
0036865910
-
Two novel psychrotolerant species, Bacillus psychrotolerans sp. nov. and Bacillus psychrodurans sp. nov., which contain ornithine in their cell walls
-
Abd El-Rahman HA, Fritze D, Sproer C, Claus D. 2002. Two novel psychrotolerant species, Bacillus psychrotolerans sp. nov. and Bacillus psychrodurans sp. nov., which contain ornithine in their cell walls. Int J Syst Evol Microbiol 52:2127-2133.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 2127-2133
-
-
Abd El-Rahman, H.A.1
Fritze, D.2
Sproer, C.3
Claus, D.4
-
72
-
-
78249257743
-
Psychrobacillus ge. nov. and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillusinsolitus comb. nov., Psychrobacilluspsychrotolerans comb. nov. and Psychrobacillus psychrodurans comb. nov
-
Krishnamurthi S, Ruckmani A, Pukall R, Chakrabarti T. 2010. Psychrobacillus ge. nov. and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillusinsolitus comb. nov., Psychrobacilluspsychrotolerans comb. nov. and Psychrobacillus psychrodurans comb. nov. Syst Appl Microbiol 33:367-373.
-
(2010)
Syst Appl Microbiol
, vol.33
, pp. 367-373
-
-
Krishnamurthi, S.1
Ruckmani, A.2
Pukall, R.3
Chakrabarti, T.4
-
73
-
-
36549017617
-
Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov
-
Mesbah NM, Hedrick DB, Peacock AD, Rohde M, Wiegel J. 2007. Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov. Int J Syst Evol Microbiol 57:2507-2512.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2507-2512
-
-
Mesbah, N.M.1
Hedrick, D.B.2
Peacock, A.D.3
Rohde, M.4
Wiegel, J.5
-
74
-
-
79960397181
-
Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WNLF
-
Zhao B, Mesbah NM, Dalin E, Goodwin L, Nolan M, Pitluck S, Chertkov O, Brettin TS, Han J, Larimer FW, Land ML, Hauser L, Kyrpides N, Wiegel J. 2011. Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WNLF. J Bacteriol 193:4023-4024.
-
(2011)
J Bacteriol
, vol.193
, pp. 4023-4024
-
-
Zhao, B.1
Mesbah, N.M.2
Dalin, E.3
Goodwin, L.4
Nolan, M.5
Pitluck, S.6
Chertkov, O.7
Brettin, T.S.8
Han, J.9
Larimer, F.W.10
Land, M.L.11
Hauser, L.12
Kyrpides, N.13
Wiegel, J.14
-
75
-
-
72949107614
-
EtfA catalyses the formation of dipicolinic acid in Clostridium perfringens
-
Orsburn BC, Melville SB, Popham DL. 2010. EtfA catalyses the formation of dipicolinic acid in Clostridium perfringens. Mol Microbiol 75:178-186.
-
(2010)
Mol Microbiol
, vol.75
, pp. 178-186
-
-
Orsburn, B.C.1
Melville, S.B.2
Popham, D.L.3
-
76
-
-
0029932594
-
Formation of ammonium from nitrate during chemolithoautotrophic growth of the extremely thermophilic bacterium Ammonifex degensii gen. nov. sp. nov
-
Huber R, Rossnagel P, Woese CR, Rachel R, Langworthy TA, Stetter KO. 1996. Formation of ammonium from nitrate during chemolithoautotrophic growth of the extremely thermophilic bacterium Ammonifex degensii gen. nov. sp. nov. Syst Appl Microbiol 19:40-49.
-
(1996)
Syst Appl Microbiol
, vol.19
, pp. 40-49
-
-
Huber, R.1
Rossnagel, P.2
Woese, C.R.3
Rachel, R.4
Langworthy, T.A.5
Stetter, K.O.6
-
77
-
-
0028309669
-
Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: an obligately anaerobic, extremely thermophilic, cellulolytic bacterium
-
Rainey FA, Donnison AM, Janssen PH, Saul D, Rodrigo A, Bergquist PL, Daniel RM, Stackebrandt E, Morgan HW. 1994. Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: an obligately anaerobic, extremely thermophilic, cellulolytic bacterium. FEMS Microbiol Lett 120:263-266.
-
(1994)
FEMS Microbiol Lett
, vol.120
, pp. 263-266
-
-
Rainey, F.A.1
Donnison, A.M.2
Janssen, P.H.3
Saul, D.4
Rodrigo, A.5
Bergquist, P.L.6
Daniel, R.M.7
Stackebrandt, E.8
Morgan, H.W.9
-
78
-
-
0033022027
-
Caldicellulosiruptor kristjanssonii sp. nov., a cellulolytic, extremely thermophilic, anaerobic bacterium
-
Bredholt S, Sonne-Hansen J, Nielsen P, Mathrani IM, Ahring BK. 1999. Caldicellulosiruptor kristjanssonii sp. nov., a cellulolytic, extremely thermophilic, anaerobic bacterium. Int J Syst Bacteriol 49:991-996.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 991-996
-
-
Bredholt, S.1
Sonne-Hansen, J.2
Nielsen, P.3
Mathrani, I.M.4
Ahring, B.K.5
-
79
-
-
48549102338
-
Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs
-
Miroshnichenko ML, Kublanov IV, Kostrikina NA, Tourova TP, Kolganova TV, Birkeland NK, Bonch-Osmolovskaya EA. 2008. Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs. Int J Syst Evol Microbiol 58:1492-1496.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1492-1496
-
-
Miroshnichenko, M.L.1
Kublanov, I.V.2
Kostrikina, N.A.3
Tourova, T.P.4
Kolganova, T.V.5
Birkeland, N.K.6
Bonch-Osmolovskaya, E.A.7
-
80
-
-
79952387638
-
Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus
-
Blumer-Schuette SE, Ozdemir I, Mistry D, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Woyke T, Mikhailova N, Pati A, Kyrpides NC, Ivanova N, Detter JC, Walston-Davenport K, Han S, Adams MW, Kelly RM. 2011. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus. J Bacteriol 193:1483-1484.
-
(2011)
J Bacteriol
, vol.193
, pp. 1483-1484
-
-
Blumer-Schuette, S.E.1
Ozdemir, I.2
Mistry, D.3
Lucas, S.4
Lapidus, A.5
Cheng, J.F.6
Goodwin, L.A.7
Pitluck, S.8
Land, M.L.9
Hauser, L.J.10
Woyke, T.11
Mikhailova, N.12
Pati, A.13
Kyrpides, N.C.14
Ivanova, N.15
Detter, J.C.16
Walston-Davenport, K.17
Han, S.18
Adams, M.W.19
Kelly, R.M.20
more..
-
81
-
-
14944356813
-
Cellulase, clostridia, and ethanol
-
Demain AL, Newcomb M, Wu JH. 2005. Cellulase, clostridia, and ethanol. Microbiol Mol Biol Rev 69:124-154.
-
(2005)
Microbiol Mol Biol Rev
, vol.69
, pp. 124-154
-
-
Demain, A.L.1
Newcomb, M.2
Wu, J.H.3
-
82
-
-
84861342725
-
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia ge. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010
-
Klenk H-P, Lapidus A, Chertkov O, Copeland A, Glavina del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Bruce D, Goodwin L, Pitluck S, Pati A, Ivanova N, Mavromatis K, Daum C, Chen A, Palaniappan K, Chang YJ, Land ML, Hauser LJ, Jeffries CD, Detter JC, Rohde M, Abt B, Pukall R, Göker M, Bristow J, Markowitz V, Hugenholtz P, Eisen JA. 2011. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia ge. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genomic Sci 5:121-134.
-
(2011)
Stand Genomic Sci
, vol.5
, pp. 121-134
-
-
Klenk, H.-P.1
Lapidus, A.2
Chertkov, O.3
Copeland, A.4
Glavina del Rio, T.5
Nolan, M.6
Lucas, S.7
Chen, F.8
Tice, H.9
Cheng, J.F.10
Han, C.11
Bruce, D.12
Goodwin, L.13
Pitluck, S.14
Pati, A.15
Ivanova, N.16
Mavromatis, K.17
Daum, C.18
Chen, A.19
Palaniappan, K.20
Chang, Y.J.21
Land, M.L.22
Hauser, L.J.23
Jeffries, C.D.24
Detter, J.C.25
Rohde, M.26
Abt, B.27
Pukall, R.28
Göker, M.29
Bristow, J.30
Markowitz, V.31
Hugenholtz, P.32
Eisen, J.A.33
more..
-
83
-
-
80053614920
-
Complete genome analysis of Sulfobacillus acidophilus strain TPY, isolated from a hydrothermal vent in the Pacific Ocean
-
Li B, Chen Y, Liu Q, Hu S, Chen X. 2011. Complete genome analysis of Sulfobacillus acidophilus strain TPY, isolated from a hydrothermal vent in the Pacific Ocean. J Bacteriol 193:5555-5556.
-
(2011)
J Bacteriol
, vol.193
, pp. 5555-5556
-
-
Li, B.1
Chen, Y.2
Liu, Q.3
Hu, S.4
Chen, X.5
-
84
-
-
34548216842
-
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
-
Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, Zhulin IB, Robb FT, Eisen JA. 2005. Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. PLoS Genet 1:e65. doi: 10.1371/journal.pgen.0010065.
-
(2005)
PLoS Genet
, vol.1
, pp. e65
-
-
Wu, M.1
Ren, Q.2
Durkin, A.S.3
Daugherty, S.C.4
Brinkac, L.M.5
Dodson, R.J.6
Madupu, R.7
Sullivan, S.A.8
Kolonay, J.F.9
Haft, D.H.10
Nelson, W.C.11
Tallon, L.J.12
Jones, K.M.13
Ulrich, L.E.14
Gonzalez, J.M.15
Zhulin, I.B.16
Robb, F.T.17
Eisen, J.A.18
-
85
-
-
77955610491
-
Clostridium ljungdahlii represents a microbial production platform based on syngas
-
Kopke M, Held C, Hujer S, Liesegang H, Wiezer A, Wollherr A, Ehrenreich A, Liebl W, Gottschalk G, Durre P. 2010. Clostridium ljungdahlii represents a microbial production platform based on syngas. Proc Natl Acad Sci USA 107:13087-13092.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 13087-13092
-
-
Kopke, M.1
Held, C.2
Hujer, S.3
Liesegang, H.4
Wiezer, A.5
Wollherr, A.6
Ehrenreich, A.7
Liebl, W.8
Gottschalk, G.9
Durre, P.10
-
86
-
-
77953649615
-
Taxonomy, phylogeny, and ecology of the heliobacteria
-
Asao M, Madigan MT. 2010. Taxonomy, phylogeny, and ecology of the heliobacteria. Photosynth Res 104:103-111.
-
(2010)
Photosynth Res
, vol.104
, pp. 103-111
-
-
Asao, M.1
Madigan, M.T.2
-
87
-
-
46049109918
-
The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus
-
Sattley WM, Madigan MT, Swingley WD, Cheung PC, Clocksin KM, Conrad AL, Dejesa LC, Honchak BM, Jung DO, Karbach LE, Kurdoglu A, Lahiri S, Mastrian SD, Page LE, Taylor HL, Wang ZT, Raymond J, Chen M, Blankenship RE, Touchman JW. 2008. The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus. J Bacteriol 190:4687-4696.
-
(2008)
J Bacteriol
, vol.190
, pp. 4687-4696
-
-
Sattley, W.M.1
Madigan, M.T.2
Swingley, W.D.3
Cheung, P.C.4
Clocksin, K.M.5
Conrad, A.L.6
Dejesa, L.C.7
Honchak, B.M.8
Jung, D.O.9
Karbach, L.E.10
Kurdoglu, A.11
Lahiri, S.12
Mastrian, S.D.13
Page, L.E.14
Taylor, H.L.15
Wang, Z.T.16
Raymond, J.17
Chen, M.18
Blankenship, R.E.19
Touchman, J.W.20
more..
-
88
-
-
77952503267
-
Energy metabolism of Heliobacterium modesticaldum during phototrophic and chemotrophic growth
-
Tang KH, Yue H, Blankenship RE. 2010. Energy metabolism of Heliobacterium modesticaldum during phototrophic and chemotrophic growth. BMC Microbiol 10:150. doi: 10.1186/1471-2180-10-150.
-
(2010)
BMC Microbiol
, vol.10
, pp. 150
-
-
Tang, K.H.1
Yue, H.2
Blankenship, R.E.3
-
89
-
-
84865211266
-
Genome sequence of thermotolerant Bacillus methanolicus:features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol
-
Heggeset TM, Krog A, Balzer S, Wentzel A, Ellingsen TE, Brautaset T. 2012. Genome sequence of thermotolerant Bacillus methanolicus:features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol. Appl Environ Microbiol 78:5170-5181.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5170-5181
-
-
Heggeset, T.M.1
Krog, A.2
Balzer, S.3
Wentzel, A.4
Ellingsen, T.E.5
Brautaset, T.6
-
90
-
-
30544443489
-
A comparative genomic view of clostridial sporulation and physiology
-
Paredes CJ, Alsaker KV, Papoutsakis ET. 2005. A comparative genomic view of clostridial sporulation and physiology. Nat Rev Microbiol 3:969-978.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 969-978
-
-
Paredes, C.J.1
Alsaker, K.V.2
Papoutsakis, E.T.3
-
91
-
-
84876189467
-
A genomic signature and the identification of new sporulation genes
-
Abecasis AB, Serrano M, Alves R, Quintais L, Pereira-Leal JB, Henriques AO. 2013. A genomic signature and the identification of new sporulation genes. J Bacteriol 195:2101-2115.
-
(2013)
J Bacteriol
, vol.195
, pp. 2101-2115
-
-
Abecasis, A.B.1
Serrano, M.2
Alves, R.3
Quintais, L.4
Pereira-Leal, J.B.5
Henriques, A.O.6
-
92
-
-
33744983969
-
Structural classification of bacterial response regulators: diversity of output domains and domain combinations
-
Galperin MY. 2006. Structural classification of bacterial response regulators: diversity of output domains and domain combinations. J Bacteriol 188:4169-4182.
-
(2006)
J Bacteriol
, vol.188
, pp. 4169-4182
-
-
Galperin, M.Y.1
-
93
-
-
0028009902
-
Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus
-
Farrow JA, Wallbanks S, Collins MD. 1994. Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus. Int J Syst Bacteriol 44:74-82.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 74-82
-
-
Farrow, J.A.1
Wallbanks, S.2
Collins, M.D.3
-
94
-
-
0031874929
-
Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov
-
Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ, Ludwig W, Schleifer KH, Fiedler F, Schubert K. 1998. Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov. Int J Syst Bacteriol 48:859-877.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 859-877
-
-
Kloos, W.E.1
Ballard, D.N.2
George, C.G.3
Webster, J.A.4
Hubner, R.J.5
Ludwig, W.6
Schleifer, K.H.7
Fiedler, F.8
Schubert, K.9
-
95
-
-
0028800208
-
Comparison of 16S rRNA sequences of segmented filamentous bacteria isolated from mice, rats, and chickens and proposal of 'Candidatus Arthromitus'
-
Snel J, Heinen PP, Blok HJ, Carman RJ, Duncan AJ, Allen PC, Collins MD. 1995. Comparison of 16S rRNA sequences of segmented filamentous bacteria isolated from mice, rats, and chickens and proposal of 'Candidatus Arthromitus'. Int J Syst Bacteriol 45:780-782.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 780-782
-
-
Snel, J.1
Heinen, P.P.2
Blok, H.J.3
Carman, R.J.4
Duncan, A.J.5
Allen, P.C.6
Collins, M.D.7
-
96
-
-
80051994193
-
The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing
-
Kuwahara T, Ogura Y, Oshima K, Kurokawa K, Ooka T, Hirakawa H, Itoh T, Nakayama-Imaohji H, Ichimura M, Itoh K, Ishifune C, Maekawa Y, Yasutomo K, Hattori M, Hayashi T. 2011. The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing. DNA Res 18:291-303.
-
(2011)
DNA Res
, vol.18
, pp. 291-303
-
-
Kuwahara, T.1
Ogura, Y.2
Oshima, K.3
Kurokawa, K.4
Ooka, T.5
Hirakawa, H.6
Itoh, T.7
Nakayama-Imaohji, H.8
Ichimura, M.9
Itoh, K.10
Ishifune, C.11
Maekawa, Y.12
Yasutomo, K.13
Hattori, M.14
Hayashi, T.15
-
97
-
-
0026877204
-
Intestinal, segmented, filamentous bacteria
-
Klaasen HL, Koopman JP, Poelma FG, Beynen AC. 1992. Intestinal, segmented, filamentous bacteria. FEMS Microbiol Rev 8:165-180.
-
(1992)
FEMS Microbiol Rev
, vol.8
, pp. 165-180
-
-
Klaasen, H.L.1
Koopman, J.P.2
Poelma, F.G.3
Beynen, A.C.4
-
98
-
-
0027411385
-
Intestinal, segmented, filamentous bacteria in a wide range of vertebrate species
-
Klaasen HL, Koopman JP, Van den Brink ME, Bakker MH, Poelma FG, Beynen AC. 1993. Intestinal, segmented, filamentous bacteria in a wide range of vertebrate species. Lab Anim 27:141-150.
-
(1993)
Lab Anim
, vol.27
, pp. 141-150
-
-
Klaasen, H.L.1
Koopman, J.P.2
Van den Brink, M.E.3
Bakker, M.H.4
Poelma, F.G.5
Beynen, A.C.6
-
99
-
-
0017087129
-
Evidence for a complex life cycle and endospore formation in the attached, filamentous, segmented bacterium from murine ileum
-
Chase DG, Erlandsen SL. 1976. Evidence for a complex life cycle and endospore formation in the attached, filamentous, segmented bacterium from murine ileum. J Bacteriol 127:572-583.
-
(1976)
J Bacteriol
, vol.127
, pp. 572-583
-
-
Chase, D.G.1
Erlandsen, S.L.2
-
100
-
-
80053045987
-
Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation
-
Prakash T, Oshima K, Morita H, Fukuda S, Imaoka A, Kumar N, Sharma VK, Kim SW, Takahashi M, Saitou N, Taylor TD, Ohno H, Umesaki Y, Hattori M. 2011. Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation. Cell Host Microbe 10:273-284.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 273-284
-
-
Prakash, T.1
Oshima, K.2
Morita, H.3
Fukuda, S.4
Imaoka, A.5
Kumar, N.6
Sharma, V.K.7
Kim, S.W.8
Takahashi, M.9
Saitou, N.10
Taylor, T.D.11
Ohno, H.12
Umesaki, Y.13
Hattori, M.14
-
101
-
-
80053025965
-
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment
-
Sczesnak A, Segata N, Qin X, Gevers D, Petrosino JF, Huttenhower C, Littman DR, Ivanov, II. 2011. The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host Microbe 10:260-272.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 260-272
-
-
Sczesnak, A.1
Segata, N.2
Qin, X.3
Gevers, D.4
Petrosino, J.F.5
Huttenhower, C.6
Littman, D.R.7
Ivanov, I.I.8
-
102
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Diaz-Muniz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D. 2006. Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci USA 103:15611-15616.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
Koonin, E.6
Pavlov, A.7
Pavlova, N.8
Karamychev, V.9
Polouchine, N.10
Shakhova, V.11
Grigoriev, I.12
Lou, Y.13
Rohksar, D.14
Lucas, S.15
Huang, K.16
Goodstein, D.M.17
Hawkins, T.18
Plengvidhya, V.19
Welker, D.20
Hughes, J.21
Goh, Y.22
Benson, A.23
Baldwin, K.24
Lee, J.H.25
Diaz-Muniz, I.26
Dosti, B.27
Smeianov, V.28
Wechter, W.29
Barabote, R.30
Lorca, G.31
Altermann, E.32
Barrangou, R.33
Ganesan, B.34
Xie, Y.35
Rawsthorne, H.36
Tamir, D.37
Parker, C.38
Breidt, F.39
Broadbent, J.40
Hutkins, R.41
O'Sullivan, D.42
Steele, J.43
Unlu, G.44
Saier, M.45
Klaenhammer, T.46
Richardson, P.47
Kozyavkin, S.48
Weimer, B.49
Mills, D.50
more..
-
104
-
-
75749112419
-
Species 2000& ITIS Catalogue of Life: 2009 Annual Checklist Taxonomic Classification
-
Reading, UK
-
Bisby FA, Roskov YR, Orrell TM, Nicolson D, Paglinawan LE, Bailly N, Kirk PM, Bourgoin T, Baillargeon G (ed). 2009. Species 2000& ITIS Catalogue of Life: 2009 Annual Checklist Taxonomic Classification. Species 2000, Reading, UK.
-
(2009)
Species 2000
-
-
Bisby, F.A.1
Roskov, Y.R.2
Orrell, T.M.3
Nicolson, D.4
Paglinawan, L.E.5
Bailly, N.6
Kirk, P.M.7
Bourgoin, T.8
Baillargeon, G.9
-
105
-
-
77951246352
-
Taxonomic outline of the phylum Firmicutes
-
De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (ed), 2nd ed, The Firmicutes. Springer, New York, NY
-
Ludwig W, Schleifer K-H, Whitman WB. 2009. Taxonomic outline of the phylum Firmicutes, p 15-17. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H, Whitman WB (ed), Bergey's Manual of Systematic Bacteriology, 2nd ed, vol 3. The Firmicutes. Springer, New York, NY.
-
(2009)
Bergey's Manual of Systematic Bacteriology
, vol.3
, pp. 15-17
-
-
Ludwig, W.1
Schleifer, K.-H.2
Whitman, W.B.3
-
106
-
-
84873739311
-
The SILVA ribosomal RNA gene database project:improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. 2013. The SILVA ribosomal RNA gene database project:improved data processing and web-based tools. Nucleic Acids Res 41:D590-D596.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glöckner, F.O.8
-
107
-
-
33746061683
-
Greengenes, a chimerachecked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. 2006. Greengenes, a chimerachecked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72:5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
108
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. 2012. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 6:610-618.
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
109
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. 2009. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37:D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
110
-
-
0023849516
-
Pasteuria thornei sp. nov. and Pasteuria penetrans sensu stricto emend., mycelial and endosporeforming bacteria parasitic, respectively, on plant-parasitic nematodes of the genera Pratylenchus and Meloidogyne
-
Starr MP, Sayre RM. 1988. Pasteuria thornei sp. nov. and Pasteuria penetrans sensu stricto emend., mycelial and endosporeforming bacteria parasitic, respectively, on plant-parasitic nematodes of the genera Pratylenchus and Meloidogyne. Ann Inst Pasteur Microbiol 139:11-31.
-
(1988)
Ann Inst Pasteur Microbiol
, vol.139
, pp. 11-31
-
-
Starr, M.P.1
Sayre, R.M.2
-
111
-
-
70350697553
-
Desmospora activa ge. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006
-
Yassin AF, Hupfer H, Klenk HP, Siering C. 2009. Desmospora activa ge. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006. Int J Syst Evol Microbiol 59:454-459.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 454-459
-
-
Yassin, A.F.1
Hupfer, H.2
Klenk, H.P.3
Siering, C.4
-
112
-
-
33751317452
-
Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolactobacillus laevolacticus comb. nov
-
Hatayama K, Shoun H, Ueda Y, Nakamura A. 2006. Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolactobacillus laevolacticus comb. nov. Int J Syst Evol Microbiol 56:2545-2551.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 2545-2551
-
-
Hatayama, K.1
Shoun, H.2
Ueda, Y.3
Nakamura, A.4
-
113
-
-
76849114726
-
Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov
-
Yokoyama H, Wagner ID, Wiegel J. 2010. Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov. Int J Syst Evol Microbiol 60:67-71.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 67-71
-
-
Yokoyama, H.1
Wagner, I.D.2
Wiegel, J.3
-
114
-
-
84857930133
-
Characterization of Defluviitalea saccharophila gen. nov., sp. nov., a thermophilic bacterium isolated from an upflow anaerobic filter treating abattoir wastewaters, and proposal of Defluviitaleaceae fam. nov
-
Jabari L, Gannoun H, Cayol JL, Hamdi M, Fauque G, Ollivier B, Fardeau ML. 2012. Characterization of Defluviitalea saccharophila gen. nov., sp. nov., a thermophilic bacterium isolated from an upflow anaerobic filter treating abattoir wastewaters, and proposal of Defluviitaleaceae fam. nov. Int J Syst Evol Microbiol 62:550-555.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 550-555
-
-
Jabari, L.1
Gannoun, H.2
Cayol, J.L.3
Hamdi, M.4
Fauque, G.5
Ollivier, B.6
Fardeau, M.L.7
-
115
-
-
77952718348
-
Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes
-
Eeckhaut V, Van Immerseel F, Pasmans F, De Brandt E, Haesebrouck F, Ducatelle R, Vandamme P. 2010. Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes. Int J Syst Evol Microbiol 60:1108-1112.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 1108-1112
-
-
Eeckhaut, V.1
Van Immerseel, F.2
Pasmans, F.3
De Brandt, E.4
Haesebrouck, F.5
Ducatelle, R.6
Vandamme, P.7
-
116
-
-
0030002866
-
Isolation and characterization of Sporobacter termitidis gen. nov., sp. nov., from the digestive tract of the wood-feeding termite Nasutitermes lujae
-
Grech-Mora I, Fardeau M-L, Patel BKC, Ollivier B, Rimbault A, Prensier G, Garcia JL, Garnier-Sillam E. 1996. Isolation and characterization of Sporobacter termitidis gen. nov., sp. nov., from the digestive tract of the wood-feeding termite Nasutitermes lujae. Int J Syst Evol Microbiol 46:512-518.
-
(1996)
Int J Syst Evol Microbiol
, vol.46
, pp. 512-518
-
-
Grech-Mora, I.1
Fardeau, M.-L.2
Patel, B.K.C.3
Ollivier, B.4
Rimbault, A.5
Prensier, G.6
Garcia, J.L.7
Garnier-Sillam, E.8
-
117
-
-
0034023853
-
Pelospora glutarica gen. nov., sp. nov., a glutarate-fermenting, strictly anaerobic, spore-forming bacterium
-
Matthies C, Springer N, Ludwig W, Schink B. 2000. Pelospora glutarica gen. nov., sp. nov., a glutarate-fermenting, strictly anaerobic, spore-forming bacterium. Int J Syst Evol Microbiol 50:645-648.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 645-648
-
-
Matthies, C.1
Springer, N.2
Ludwig, W.3
Schink, B.4
-
118
-
-
0026608760
-
Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov
-
Wisotzkey JD, Jurtshuk P, Jr, Fox GE, Deinhard G, Poralla K. 1992. Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42:263-269.
-
(1992)
Int J Syst Bacteriol
, vol.42
, pp. 263-269
-
-
Wisotzkey, J.D.1
Jurtshuk, P.2
Fox, G.E.3
Deinhard, G.4
Poralla, K.5
-
119
-
-
0002485280
-
Bacillus acidocaldarius sp.nov., an acidophilic thermophilic spore-forming bacterium
-
Darland G, Brock TD. 1971. Bacillus acidocaldarius sp.nov., an acidophilic thermophilic spore-forming bacterium. J Gen Microbiol 67:9-15.
-
(1971)
J Gen Microbiol
, vol.67
, pp. 9-15
-
-
Darland, G.1
Brock, T.D.2
-
120
-
-
78649371598
-
Isolation and identification of a strain of moderate thermophilic and acidophilic bacterium from deep sea
-
Qi H, Chen H, Ao J, Zhou H, Chen X. 2009. Isolation and identification of a strain of moderate thermophilic and acidophilic bacterium from deep sea. Acta Oceanol Sin 31:152-158.
-
(2009)
Acta Oceanol Sin
, vol.31
, pp. 152-158
-
-
Qi, H.1
Chen, H.2
Ao, J.3
Zhou, H.4
Chen, X.5
-
121
-
-
84865267977
-
Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT)
-
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk H-P, Mavromatis K. 2012. Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT). Stand Genomic Sci 6:293-303.
-
(2012)
Stand Genomic Sci
, vol.6
, pp. 293-303
-
-
Anderson, I.1
Chertkov, O.2
Chen, A.3
Saunders, E.4
Lapidus, A.5
Nolan, M.6
Lucas, S.7
Hammon, N.8
Deshpande, S.9
Cheng, J.-F.10
Han, C.11
Tapia, R.12
Goodwin, L.A.13
Pitluck, S.14
Liolios, K.15
Pagani, I.16
Ivanova, N.17
Mikhailova, N.18
Pati, A.19
Palaniappan, K.20
Land, M.21
Pan, C.22
Rohde, M.23
Pukall, R.24
Göker, M.25
Detter, J.C.26
Woyke, T.27
Bristow, J.28
Eisen, J.A.29
Markowitz, V.30
Hugenholtz, P.31
Kyrpides, N.C.32
Klenk, H.-P.33
Mavromatis, K.34
more..
-
122
-
-
44749092350
-
Comparison of selected characteristics of Sulfobacillus species and review of their occurrence in acidic and bioleaching environments
-
Watling HR, Perrot FA, Shiers DW. 2008. Comparison of selected characteristics of Sulfobacillus species and review of their occurrence in acidic and bioleaching environments. Hydrometallurgy 93:57-65.
-
(2008)
Hydrometallurgy
, vol.93
, pp. 57-65
-
-
Watling, H.R.1
Perrot, F.A.2
Shiers, D.W.3
-
123
-
-
4644362851
-
Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium
-
Ye Q, Roh Y, Carroll SL, Blair B, Zhou J, Zhang CL, Fields MW. 2004. Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium. Appl Environ Microbiol 70:5595-5602.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5595-5602
-
-
Ye, Q.1
Roh, Y.2
Carroll, S.L.3
Blair, B.4
Zhou, J.5
Zhang, C.L.6
Fields, M.W.7
-
124
-
-
0029095996
-
Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species
-
Nielsen P, Fritze D, Priest FG. 1995. Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. Microbiology 141:1745-1761.
-
(1995)
Microbiology
, vol.141
, pp. 1745-1761
-
-
Nielsen, P.1
Fritze, D.2
Priest, F.G.3
-
125
-
-
0028233309
-
Growth and bioenergetics of alkaliphilic Bacillus firmus OF4 in continuous culture at high pH
-
Sturr MG, Guffanti AA, Krulwich TA. 1994. Growth and bioenergetics of alkaliphilic Bacillus firmus OF4 in continuous culture at high pH. J Bacteriol 176:3111-3116.
-
(1994)
J Bacteriol
, vol.176
, pp. 3111-3116
-
-
Sturr, M.G.1
Guffanti, A.A.2
Krulwich, T.A.3
-
126
-
-
82555205330
-
Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4
-
Janto B, Ahmed A, Ito M, Liu J, Hicks DB, Pagni S, Fackelmayer OJ, Smith TA, Earl J, Elbourne LD, Hassan K, Paulsen IT, Kolsto AB, Tourasse NJ, Ehrlich GD, Boissy R, Ivey DM, Li G, Xue Y, Ma Y, Hu FZ, Krulwich TA. 2011. Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4. Environ Microbiol 13:3289-3309.
-
(2011)
Environ Microbiol
, vol.13
, pp. 3289-3309
-
-
Janto, B.1
Ahmed, A.2
Ito, M.3
Liu, J.4
Hicks, D.B.5
Pagni, S.6
Fackelmayer, O.J.7
Smith, T.A.8
Earl, J.9
Elbourne, L.D.10
Hassan, K.11
Paulsen, I.T.12
Kolsto, A.B.13
Tourasse, N.J.14
Ehrlich, G.D.15
Boissy, R.16
Ivey, D.M.17
Li, G.18
Xue, Y.19
Ma, Y.20
Hu, F.Z.21
Krulwich, T.A.22
more..
-
127
-
-
9944239808
-
Transfer ofBacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov
-
Yoon JH,Oh TK, Park YH. 2004. Transfer ofBacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int J Syst Evol Microbiol 54:2163-2167.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 2163-2167
-
-
Yoon, J.H.1
Oh, T.K.2
Park, Y.H.3
-
128
-
-
84869116204
-
Draft genome sequence of Virgibacillus halodenitrificans 1806
-
Lee SJ, Lee YJ, Jeong H, Lee HS, Pan JG, Kim BC, Lee DW. 2012. Draft genome sequence of Virgibacillus halodenitrificans 1806. J Bacteriol 194:6332-6333.
-
(2012)
J Bacteriol
, vol.194
, pp. 6332-6333
-
-
Lee, S.J.1
Lee, Y.J.2
Jeong, H.3
Lee, H.S.4
Pan, J.G.5
Kim, B.C.6
Lee, D.W.7
-
129
-
-
0030814693
-
Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacteriumfrom a hot spring in Iceland
-
Larsen L, Nielsen P, Ahring BK. 1997. Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacteriumfrom a hot spring in Iceland. Arch Microbiol 168:114-119.
-
(1997)
Arch Microbiol
, vol.168
, pp. 114-119
-
-
Larsen, L.1
Nielsen, P.2
Ahring, B.K.3
-
130
-
-
0031783680
-
Bacillus weihenstephanensis sp. nov. is a new psychrotolerant species of the Bacillus cereus group
-
Lechner S, Mayr R, Francis KP, Pruss BM, Kaplan T, Wiessner-Gunkel E, Stewart GS, Scherer S. 1998. Bacillus weihenstephanensis sp. nov. is a new psychrotolerant species of the Bacillus cereus group. Int J Syst Bacteriol 48:1373-1382.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 1373-1382
-
-
Lechner, S.1
Mayr, R.2
Francis, K.P.3
Pruss, B.M.4
Kaplan, T.5
Wiessner-Gunkel, E.6
Stewart, G.S.7
Scherer, S.8
-
131
-
-
41749102414
-
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032
-
Gioia J, Yerrapragada S, Qin X, Jiang H, Igboeli OC, Muzny D, Dugan-Rocha S, Ding Y, Hawes A, Liu W, Perez L, Kovar C, Dinh H, Lee S, Nazareth L, Blyth P, Holder M, Buhay C, Tirumalai MR, Liu Y, Dasgupta I, Bokhetache L, Fujita M, Karouia F, Eswara Moorthy P, Siefert J, Uzman A, Buzumbo P, Verma A, Zwiya H, McWilliams BD, Olowu A, Clinkenbeard KD, Newcombe D, Golebiewski L, Petrosino JF, Nicholson WL, Fox GE, Venkateswaran K, Highlander SK, Weinstock GM. 2007. Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. PLoS One 2:e928. doi: 10.1371/journal.pone.0000928.
-
(2007)
PLoS One
, vol.2
, pp. e928
-
-
Gioia, J.1
Yerrapragada, S.2
Qin, X.3
Jiang, H.4
Igboeli, O.C.5
Muzny, D.6
Dugan-Rocha, S.7
Ding, Y.8
Hawes, A.9
Liu, W.10
Perez, L.11
Kovar, C.12
Dinh, H.13
Lee, S.14
Nazareth, L.15
Blyth, P.16
Holder, M.17
Buhay, C.18
Tirumalai, M.R.19
Liu, Y.20
Dasgupta, I.21
Bokhetache, L.22
Fujita, M.23
Karouia, F.24
Eswara Moorthy, P.25
Siefert, J.26
Uzman, A.27
Buzumbo, P.28
Verma, A.29
Zwiya, H.30
McWilliams, B.D.31
Olowu, A.32
Clinkenbeard, K.D.33
Newcombe, D.34
Golebiewski, L.35
Petrosino, J.F.36
Nicholson, W.L.37
Fox, G.E.38
Venkateswaran, K.39
Highlander, S.K.40
Weinstock, G.M.41
more..
-
132
-
-
2342573451
-
Extreme spore UV resistance of Bacillus pumilus isolates obtained from an ultraclean spacecraft assembly facility
-
Link L, Sawyer J, Venkateswaran K, Nicholson W. 2004. Extreme spore UV resistance of Bacillus pumilus isolates obtained from an ultraclean spacecraft assembly facility. Microb Ecol 47:159-163.
-
(2004)
Microb Ecol
, vol.47
, pp. 159-163
-
-
Link, L.1
Sawyer, J.2
Venkateswaran, K.3
Nicholson, W.4
-
133
-
-
84998780445
-
First insights into the genome of the Gram-negative, endospore-forming organism Sporomusa ovata strain H1 DSM 2662
-
Poehlein A, Gottschalk G, Daniel R. 2013. First insights into the genome of the Gram-negative, endospore-forming organism Sporomusa ovata strain H1 DSM 2662. Genome Announc 1(5) doi: 10.1128/genomeA.00734-13.
-
(2013)
Genome Announc
, vol.1
, Issue.5
-
-
Poehlein, A.1
Gottschalk, G.2
Daniel, R.3
|