First insights into the genome of the Gram-negative, endospore-forming organism Sporomusa ovata strain H1 DSM 2662

Genome Announcements

Volumn 1, Issue 5, 2013, Pages

  Poehlein, Anja ^a   Gottschalk, Gerhard ^a   Daniel, Rolf ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998780445     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00734-13     Document Type: Article

References (15)

1. Möller B, Oßmer R, Howard BH, Gottschalk G, Hippe H. 1984. Sporomusa, a new genus of gram-negative anaerobic bacteria including Sporomusa sphaeroides spec. nov. and Sporomusa ovata spec. nov. Arch. Microbiol. 139:388-396.
2. Yutin N, Galperin MY. 2013. A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced Clostridia. Environ. Microbiol. [Epub ahead of print.] doi:10.1111/1462-2920.12173.
3. Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information, p 45-56. In Computer science and biology: proceedings of the German Conference on Bioinformatics. GCB, Hannover, Germany.
4. Sanger F, Nicklen S, Coulson AR. 1992. DNA sequencing with chainterminating inhibitors. 1977. Biotechnology 24:104-108.
5. Staden R, Beal KF, Bonfield JK. 2000. The Staden package, 1998. Methods Mol. Biol. 132:115-130.
6. Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, Kyrpides NC. 2009. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271-2278.
7. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. 2012. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40:D115-D122. doi:10.1093/nar/gkr1044.
8. Zdobnov EM, Apweiler R. 2001. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
9. Lagesen K, Hallin P, Rødland EA, Stærfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
10. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
11. Piggot PJ, Hilbert DW. 2004. Sporulation of Bacillus subtilis. Curr. Opin. Microbiol. 6:579-586.
12. Steil L, Serrano M, Henriques AO, Völker U. 2005. Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis. Microbiology 151:399-420.
13. Paredes CJ, Alsaker KV, Papoutsakis ET. 2005. A comparative genomic view of clostridial sporulation and physiology. Nat. Rev. Microbiol. 12:969-978.
14. Zhang Y, Baranov PV, Atkins JF, Gladyshev VN. 2005. Pyrrolysine and selenocysteine use dissimilar decoding strategies. J. Biol. Chem. 280: 20740-20751.
15. Krzycki JA. 2004. Function of genetically encoded pyrrolysine in corrinoid-dependent methylamine methyltransferases. Curr. Opin. Chem. Biol. 8:484-491.