-
3
-
-
58549119985
-
The evolution of hierarchical gene regulatory networks
-
D.H. Erwin, and E.H. Davidson The evolution of hierarchical gene regulatory networks Nat. Rev. Genet. 10 2009 141 148
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 141-148
-
-
Erwin, D.H.1
Davidson, E.H.2
-
4
-
-
34548724489
-
The evolution of genetic networks by non-adaptive processes
-
M. Lynch The evolution of genetic networks by non-adaptive processes Nat. Rev. Genet. 8 2007 803 813
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 803-813
-
-
Lynch, M.1
-
5
-
-
58149481232
-
Properties of developmental gene regulatory networks
-
E.H. Davidson, and M.S. Levine Properties of developmental gene regulatory networks Proc. Natl. Acad. Sci. USA 105 2008 20063 20066
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 20063-20066
-
-
Davidson, E.H.1
Levine, M.S.2
-
6
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
DOI 10.1038/nature06340, PII NATURE06340
-
A. Stark, M.F. Lin, P. Kheradpour, J.S. Pedersen, L. Parts, J.W. Carlson, M.A. Crosby, M.D. Rasmussen, S. Roy, and A.N. Deoras Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures Nature 450 2007 219 232 (Pubitemid 350100553)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 219-232
-
-
Stark, A.1
Lin, M.F.2
Kheradpour, P.3
Pedersen, J.S.4
Parts, L.5
Carlson, J.W.6
Crosby, M.A.7
Rasmussen, M.D.8
Roy, S.9
Deoras, A.N.10
Ruby, J.G.11
Brennecke, J.12
Hodges, E.13
Hinrichs, A.S.14
Caspi, A.15
Paten, B.16
Park, S.-W.17
Han, M.V.18
Maeder, M.L.19
Polansky, B.J.20
Robson, B.E.21
Aerts, S.22
Van Helden, J.23
Hassan, B.24
Gilbert, D.G.25
Eastman, D.A.26
Rice, M.27
Weir, M.28
Hahn, M.W.29
Park, Y.30
Dewey, C.N.31
Pachter, L.32
Kent, W.J.33
Haussler, D.34
Lai, E.C.35
Bartel, D.P.36
Hannon, G.J.37
Kaufman, T.C.38
Eisen, M.B.39
Clark, A.G.40
Smith, D.41
Celniker, S.E.42
Gelbart, W.M.43
Kellis, M.44
Matthews, B.B.45
Schroeder, A.J.46
Gramates, L.S.47
St Pierre, S.E.48
Roark, M.49
Wiley Jr., K.L.50
Kulathinal, R.J.51
Zhang, P.52
Myrick, K.V.53
Antone, J.V.54
Yu, C.55
Park, S.56
Wan, K.H.57
more..
-
7
-
-
41649102927
-
Control of cell fate by the formation of an architecturally complex bacterial community
-
H. Vlamakis, C. Aguilar, R. Losick, and R. Kolter Control of cell fate by the formation of an architecturally complex bacterial community Genes Dev. 22 2008 945 953
-
(2008)
Genes Dev.
, vol.22
, pp. 945-953
-
-
Vlamakis, H.1
Aguilar, C.2
Losick, R.3
Kolter, R.4
-
8
-
-
38849105328
-
The Bacillus and Myxococcus developmental networks and their transcriptional regulators
-
L. Kroos The Bacillus and Myxococcus developmental networks and their transcriptional regulators Annu. Rev. Genet. 41 2007 13 39
-
(2007)
Annu. Rev. Genet.
, vol.41
, pp. 13-39
-
-
Kroos, L.1
-
9
-
-
1842613501
-
Regulation of endospore formation in Bacillus subtilis
-
J. Errington Regulation of endospore formation in Bacillus subtilis Nat. Rev. Microbiol. 1 2003 117 126
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 117-126
-
-
Errington, J.1
-
11
-
-
0002572455
-
A gene odyssey: Exploring the genomes of endospore-forming bacteria
-
P. Stragier A gene odyssey: Exploring the genomes of endospore-forming bacteria A.L. Sonenshein, J.A. Hoch, R. Losick, Bacillus subtilis and Its Closest Relatives: From Genes to Cells 2002 American Society for Microbiology Washington, DC 519 526
-
(2002)
Bacillus Subtilis and Its Closest Relatives: From Genes to Cells
, pp. 519-526
-
-
Stragier, P.1
-
12
-
-
0026500823
-
Crisscross regulation of cell-type-specific gene expression during development in B. subtilis
-
R. Losick, and P. Stragier Crisscross regulation of cell-type-specific gene expression during development in B. subtilis Nature 355 1992 601 604
-
(1992)
Nature
, vol.355
, pp. 601-604
-
-
Losick, R.1
Stragier, P.2
-
13
-
-
38549162091
-
DBTBS: A database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
-
N. Sierro, Y. Makita, M. De Hoon, and K. Nakai DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information Nucleic Acids Res. 36 2008 D93 D96
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Sierro, N.1
Makita, Y.2
De Hoon, M.3
Nakai, K.4
-
14
-
-
33645293152
-
An excitable gene regulatory circuit induces transient cellular differentiation
-
G.M. Suel, J. Garcia-Ojalvo, L.M. Liberman, and M.B. Elowitz An excitable gene regulatory circuit induces transient cellular differentiation Nature 440 2006 545 550
-
(2006)
Nature
, vol.440
, pp. 545-550
-
-
Suel, G.M.1
Garcia-Ojalvo, J.2
Liberman, L.M.3
Elowitz, M.B.4
-
16
-
-
33747129971
-
Single cell analysis of gene expression patterns of competence development and initiation of sporulation in Bacillus subtilis grown on chemically defined media
-
J.W. Veening, W.K. Smits, L.W. Hamoen, and O.P. Kuipers Single cell analysis of gene expression patterns of competence development and initiation of sporulation in Bacillus subtilis grown on chemically defined media J. Appl. Microbiol. 101 2006 531 541
-
(2006)
J. Appl. Microbiol.
, vol.101
, pp. 531-541
-
-
Veening, J.W.1
Smits, W.K.2
Hamoen, L.W.3
Kuipers, O.P.4
-
17
-
-
0013890997
-
Cytologic classification, by their blockage stage, of sporulation mutants of Bacillus subtilis Marburg
-
A. Ryter, P. Schaeffer, and H. Ionesco [Cytologic classification, by their blockage stage, of sporulation mutants of Bacillus subtilis Marburg] Ann. Inst. Pasteur (Paris) 110 1966 305 315
-
(1966)
Ann. Inst. Pasteur (Paris)
, vol.110
, pp. 305-315
-
-
Ryter, A.1
Schaeffer, P.2
Ionesco, H.3
-
18
-
-
0017060173
-
Genetic aspects of bacterial endospore formation
-
P.J. Piggot, and J.G. Coote Genetic aspects of bacterial endospore formation Bacteriol. Rev. 40 1976 908 962
-
(1976)
Bacteriol. Rev.
, vol.40
, pp. 908-962
-
-
Piggot, P.J.1
Coote, J.G.2
-
19
-
-
69249235738
-
A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis
-
J.W. Veening, H. Murray, and J. Errington A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis Genes Dev. 23 2009 1959 1970
-
(2009)
Genes Dev.
, vol.23
, pp. 1959-1970
-
-
Veening, J.W.1
Murray, H.2
Errington, J.3
-
20
-
-
0032497571
-
Chromosome arrangement within a bacterium
-
A.A. Teleman, P.L. Graumann, D.C. Lin, A.D. Grossman, and R. Losick Chromosome arrangement within a bacterium Curr. Biol. 8 1998 1102 1109
-
(1998)
Curr. Biol.
, vol.8
, pp. 1102-1109
-
-
Teleman, A.A.1
Graumann, P.L.2
Lin, D.C.3
Grossman, A.D.4
Losick, R.5
-
21
-
-
43249117738
-
Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis
-
J.L. Ptacin, M. Nollmann, E.C. Becker, N.R. Cozzarelli, K. Pogliano, and C. Bustamante Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis Nat. Struct. Mol. Biol. 15 2008 485 493
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 485-493
-
-
Ptacin, J.L.1
Nollmann, M.2
Becker, E.C.3
Cozzarelli, N.R.4
Pogliano, K.5
Bustamante, C.6
-
22
-
-
37349090734
-
The ATPase SpoIIIE transports DNA across fused septal membranes during sporulation in Bacillus subtilis
-
B.M. Burton, K.A. Marquis, N.L. Sullivan, T.A. Rapoport, and D.Z. Rudner The ATPase SpoIIIE transports DNA across fused septal membranes during sporulation in Bacillus subtilis Cell 131 2007 1301 1312
-
(2007)
Cell
, vol.131
, pp. 1301-1312
-
-
Burton, B.M.1
Marquis, K.A.2
Sullivan, N.L.3
Rapoport, T.A.4
Rudner, D.Z.5
-
23
-
-
0028179987
-
Bacillus subtilis SpoIIIE protein required for DNA segregation during asymmetric cell division
-
L.J. Wu, and J. Errington Bacillus subtilis SpoIIIE protein required for DNA segregation during asymmetric cell division Science 264 1994 572 575
-
(1994)
Science
, vol.264
, pp. 572-575
-
-
Wu, L.J.1
Errington, J.2
-
24
-
-
76749120537
-
A highly coordinated cell wall degradation machine governs spore morphogenesis in Bacillus subtilis
-
C. Morlot, T. Uehara, K.A. Marquis, T.G. Bernhardt, and D.Z. Rudner A highly coordinated cell wall degradation machine governs spore morphogenesis in Bacillus subtilis Genes Dev. 24 2010 411 422
-
(2010)
Genes Dev.
, vol.24
, pp. 411-422
-
-
Morlot, C.1
Uehara, T.2
Marquis, K.A.3
Bernhardt, T.G.4
Rudner, D.Z.5
-
25
-
-
0033000497
-
A vital stain for studying membrane dynamics in bacteria: A novel mechanism controlling septation during Bacillus subtilis sporulation
-
J. Pogliano, N. Osborne, M.D. Sharp, A. Abanes-De Mello, A. Perez, Y.L. Sun, and K. Pogliano A vital stain for studying membrane dynamics in bacteria: a novel mechanism controlling septation during Bacillus subtilis sporulation Mol. Microbiol. 31 1999 1149 1159
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 1149-1159
-
-
Pogliano, J.1
Osborne, N.2
Sharp, M.D.3
Abanes-De Mello, A.4
Perez, A.5
Sun, Y.L.6
Pogliano, K.7
-
26
-
-
0036203186
-
Specialized peptidoglycan of the bacterial endospore: The inner wall of the lockbox
-
D.L. Popham Specialized peptidoglycan of the bacterial endospore: the inner wall of the lockbox Cell Mol. Life Sci. 59 2002 426 433
-
(2002)
Cell Mol. Life Sci.
, vol.59
, pp. 426-433
-
-
Popham, D.L.1
-
27
-
-
77953137717
-
A distance-weighted interaction map reveals a previously uncharacterized layer of the B. subtilis spore coat
-
P.T. McKenney, A. Driks, H.A. Eskandarian, P. Grabowski, J. Guberman, K.H. Wang, Z. Gitai, and P. Eichenberger A distance-weighted interaction map reveals a previously uncharacterized layer of the B. subtilis spore coat Curr. Biol. 20 2010 934 938
-
(2010)
Curr. Biol.
, vol.20
, pp. 934-938
-
-
McKenney, P.T.1
Driks, A.2
Eskandarian, H.A.3
Grabowski, P.4
Guberman, J.5
Wang, K.H.6
Gitai, Z.7
Eichenberger, P.8
-
28
-
-
34547640042
-
Structure, assembly, and function of the spore surface layers
-
A.O. Henriques, and C.P. Moran Jr. Structure, assembly, and function of the spore surface layers Annu. Rev. Microbiol. 61 2007 555 588
-
(2007)
Annu. Rev. Microbiol.
, vol.61
, pp. 555-588
-
-
Henriques, A.O.1
Moran Jr., C.P.2
-
29
-
-
0033818517
-
Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments
-
W.L. Nicholson, N. Munakata, G. Horneck, H.J. Melosh, and P. Setlow Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments Microbiol. Mol. Biol. Rev. 64 2000 548 572
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 548-572
-
-
Nicholson, W.L.1
Munakata, N.2
Horneck, G.3
Melosh, H.J.4
Setlow, P.5
-
30
-
-
30444457865
-
The Bacillus subtilis spore coat provides "eat resistance" during phagocytic predation by the protozoan Tetrahymena thermophila
-
L.A. Klobutcher, K. Ragkousi, and P. Setlow The Bacillus subtilis spore coat provides "eat resistance" during phagocytic predation by the protozoan Tetrahymena thermophila Proc. Natl. Acad. Sci. USA 103 2006 165 170
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 165-170
-
-
Klobutcher, L.A.1
Ragkousi, K.2
Setlow, P.3
-
31
-
-
51549087553
-
Role of spore coat proteins in the resistance of Bacillus subtilis spores to Caenorhabditis elegans predation
-
M.H. Laaberki, and J. Dworkin Role of spore coat proteins in the resistance of Bacillus subtilis spores to Caenorhabditis elegans predation J. Bacteriol. 190 2008 6197 6203
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6197-6203
-
-
Laaberki, M.H.1
Dworkin, J.2
-
33
-
-
0022876012
-
New RNA polymerase sigma factor under spo0 control in Bacillus subtilis
-
H.L. Carter 3rd, and C.P. Moran Jr. New RNA polymerase sigma factor under spo0 control in Bacillus subtilis Proc. Natl. Acad. Sci. USA 83 1986 9438 9442
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 9438-9442
-
-
Carter III, H.L.1
Moran Jr., C.P.2
-
34
-
-
0035940444
-
Development of a two-part transcription probe to determine the completeness of temporal and spatial compartmentalization of gene expression during bacterial development
-
Z. Li, and P.J. Piggot Development of a two-part transcription probe to determine the completeness of temporal and spatial compartmentalization of gene expression during bacterial development Proc. Natl. Acad. Sci. USA 98 2001 12538 12543
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 12538-12543
-
-
Li, Z.1
Piggot, P.J.2
-
35
-
-
0025964291
-
Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay
-
D. Burbulys, K.A. Trach, and J.A. Hoch Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay Cell 64 1991 545 552
-
(1991)
Cell
, vol.64
, pp. 545-552
-
-
Burbulys, D.1
Trach, K.A.2
Hoch, J.A.3
-
36
-
-
0346256789
-
The Spo0A regulon of Bacillus subtilis
-
V. Molle, M. Fujita, S.T. Jensen, P. Eichenberger, J.E. Gonzalez-Pastor, J.S. Liu, and R. Losick The Spo0A regulon of Bacillus subtilis Mol. Microbiol. 50 2003 1683 1701
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 1683-1701
-
-
Molle, V.1
Fujita, M.2
Jensen, S.T.3
Eichenberger, P.4
Gonzalez-Pastor, J.E.5
Liu, J.S.6
Losick, R.7
-
37
-
-
14544290034
-
High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis
-
M. Fujita, J.E. Gonzalez-Pastor, and R. Losick High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis J. Bacteriol. 187 2005 1357 1368
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1357-1368
-
-
Fujita, M.1
Gonzalez-Pastor, J.E.2
Losick, R.3
-
38
-
-
24944483644
-
Evidence that entry into sporulation in Bacillus subtilis is governed by a gradual increase in the level and activity of the master regulator Spo0A
-
M. Fujita, and R. Losick Evidence that entry into sporulation in Bacillus subtilis is governed by a gradual increase in the level and activity of the master regulator Spo0A Genes Dev. 19 2005 2236 2244
-
(2005)
Genes Dev.
, vol.19
, pp. 2236-2244
-
-
Fujita, M.1
Losick, R.2
-
39
-
-
33645097172
-
The forespore line of gene expression in Bacillus subtilis
-
S.T. Wang, B. Setlow, E.M. Conlon, J.L. Lyon, D. Imamura, T. Sato, P. Setlow, R. Losick, and P. Eichenberger The forespore line of gene expression in Bacillus subtilis J. Mol. Biol. 358 2006 16 37
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 16-37
-
-
Wang, S.T.1
Setlow, B.2
Conlon, E.M.3
Lyon, J.L.4
Imamura, D.5
Sato, T.6
Setlow, P.7
Losick, R.8
Eichenberger, P.9
-
40
-
-
14044268828
-
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis
-
L. Steil, M. Serrano, A.O. Henriques, and U. Volker Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis Microbiology 151 2005 399 420
-
(2005)
Microbiology
, vol.151
, pp. 399-420
-
-
Steil, L.1
Serrano, M.2
Henriques, A.O.3
Volker, U.4
-
43
-
-
8844240734
-
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
-
P. Eichenberger, M. Fujita, S.T. Jensen, E.M. Conlon, D.Z. Rudner, S.T. Wang, C. Ferguson, K. Haga, T. Sato, and J.S. Liu The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis PLoS Biol. 2 2004 e328
-
(2004)
PLoS Biol.
, vol.2
, pp. 328
-
-
Eichenberger, P.1
Fujita, M.2
Jensen, S.T.3
Conlon, E.M.4
Rudner, D.Z.5
Wang, S.T.6
Ferguson, C.7
Haga, K.8
Sato, T.9
Liu, J.S.10
-
44
-
-
11144305141
-
The ylbO gene product of Bacillus subtilis is involved in the coat development and lysozyme resistance of spore
-
R. Kuwana, T. Okumura, H. Takamatsu, and K. Watabe The ylbO gene product of Bacillus subtilis is involved in the coat development and lysozyme resistance of spore FEMS Microbiol. Lett. 242 2005 51 57
-
(2005)
FEMS Microbiol. Lett.
, vol.242
, pp. 51-57
-
-
Kuwana, R.1
Okumura, T.2
Takamatsu, H.3
Watabe, K.4
-
45
-
-
0024575242
-
Switch protein alters specificity of RNA polymerase containing a compartment-specific sigma factor
-
L. Kroos, B. Kunkel, and R. Losick Switch protein alters specificity of RNA polymerase containing a compartment-specific sigma factor Science 243 1989 526 529
-
(1989)
Science
, vol.243
, pp. 526-529
-
-
Kroos, L.1
Kunkel, B.2
Losick, R.3
-
46
-
-
0037155726
-
Crystal structure of the Bacillus stearothermophilus anti-sigma factor SpoIIAB with the sporulation sigma factor sigmaF
-
E.A. Campbell, S. Masuda, J.L. Sun, O. Muzzin, C.A. Olson, S. Wang, and S.A. Darst Crystal structure of the Bacillus stearothermophilus anti-sigma factor SpoIIAB with the sporulation sigma factor sigmaF Cell 108 2002 795 807
-
(2002)
Cell
, vol.108
, pp. 795-807
-
-
Campbell, E.A.1
Masuda, S.2
Sun, J.L.3
Muzzin, O.4
Olson, C.A.5
Wang, S.6
Darst, S.A.7
-
47
-
-
0013353902
-
Sporulation-specific sigma factor sigma 29 of Bacillus subtilis is synthesized from a precursor protein, P31
-
T.L. LaBell, J.E. Trempy, and W.G. Haldenwang Sporulation-specific sigma factor sigma 29 of Bacillus subtilis is synthesized from a precursor protein, P31 Proc. Natl. Acad. Sci. USA 84 1987 1784 1788
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 1784-1788
-
-
Labell, T.L.1
Trempy, J.E.2
Haldenwang, W.G.3
-
48
-
-
0023853759
-
Processing of a sporulation sigma factor in Bacillus subtilis: How morphological structure could control gene expression
-
P. Stragier, C. Bonamy, and C. Karmazyn-Campelli Processing of a sporulation sigma factor in Bacillus subtilis: how morphological structure could control gene expression Cell 52 1988 697 704
-
(1988)
Cell
, vol.52
, pp. 697-704
-
-
Stragier, P.1
Bonamy, C.2
Karmazyn-Campelli, C.3
-
49
-
-
47249143827
-
Evidence that the Bacillus subtilis SpoIIGA protein is a novel type of signal-transducing aspartic protease
-
D. Imamura, R. Zhou, M. Feig, and L. Kroos Evidence that the Bacillus subtilis SpoIIGA protein is a novel type of signal-transducing aspartic protease J. Biol. Chem. 283 2008 15287 15299
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 15287-15299
-
-
Imamura, D.1
Zhou, R.2
Feig, M.3
Kroos, L.4
-
50
-
-
33745197543
-
Signalling network with a bistable hysteretic switch controls developmental activation of the sigma transcription factor in Bacillus subtilis
-
O.A. Igoshin, C.W. Price, and M.A. Savageau Signalling network with a bistable hysteretic switch controls developmental activation of the sigma transcription factor in Bacillus subtilis Mol. Microbiol. 61 2006 165 184
-
(2006)
Mol. Microbiol.
, vol.61
, pp. 165-184
-
-
Igoshin, O.A.1
Price, C.W.2
Savageau, M.A.3
-
51
-
-
0027534718
-
SpoIIAB is an anti-sigma factor that binds to and inhibits transcription by regulatory protein sigma F from Bacillus subtilis
-
L. Duncan, and R. Losick SpoIIAB is an anti-sigma factor that binds to and inhibits transcription by regulatory protein sigma F from Bacillus subtilis Proc. Natl. Acad. Sci. USA 90 1993 2325 2329
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 2325-2329
-
-
Duncan, L.1
Losick, R.2
-
52
-
-
0027328345
-
Sigma F, the first compartment-specific transcription factor of B. subtilis, is regulated by an anti-sigma factor that is also a protein kinase
-
K.T. Min, C.M. Hilditch, B. Diederich, J. Errington, and M.D. Yudkin Sigma F, the first compartment-specific transcription factor of B. subtilis, is regulated by an anti-sigma factor that is also a protein kinase Cell 74 1993 735 742
-
(1993)
Cell
, vol.74
, pp. 735-742
-
-
Min, K.T.1
Hilditch, C.M.2
Diederich, B.3
Errington, J.4
Yudkin, M.D.5
-
53
-
-
0028857125
-
Localization of protein implicated in establishment of cell type to sites of asymmetric division
-
F. Arigoni, K. Pogliano, C.D. Webb, P. Stragier, and R. Losick Localization of protein implicated in establishment of cell type to sites of asymmetric division Science 270 1995 637 640
-
(1995)
Science
, vol.270
, pp. 637-640
-
-
Arigoni, F.1
Pogliano, K.2
Webb, C.D.3
Stragier, P.4
Losick, R.5
-
54
-
-
0028788997
-
Activation of cell-specific transcription by a serine phosphatase at the site of asymmetric division
-
L. Duncan, S. Alper, F. Arigoni, R. Losick, and P. Stragier Activation of cell-specific transcription by a serine phosphatase at the site of asymmetric division Science 270 1995 641 644
-
(1995)
Science
, vol.270
, pp. 641-644
-
-
Duncan, L.1
Alper, S.2
Arigoni, F.3
Losick, R.4
Stragier, P.5
-
55
-
-
0028931410
-
Identification of a gene, spoIIR, that links the activation of sigma e to the transcriptional activity of sigma F during sporulation in Bacillus subtilis
-
M.L. Karow, P. Glaser, and P.J. Piggot Identification of a gene, spoIIR, that links the activation of sigma E to the transcriptional activity of sigma F during sporulation in Bacillus subtilis Proc. Natl. Acad. Sci. USA 92 1995 2012 2016
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2012-2016
-
-
Karow, M.L.1
Glaser, P.2
Piggot, P.J.3
-
56
-
-
0028966983
-
Cell-cell signaling pathway activating a developmental transcription factor in Bacillus subtilis
-
J.A. Londono-Vallejo, and P. Stragier Cell-cell signaling pathway activating a developmental transcription factor in Bacillus subtilis Genes Dev. 9 1995 503 508
-
(1995)
Genes Dev.
, vol.9
, pp. 503-508
-
-
Londono-Vallejo, J.A.1
Stragier, P.2
-
57
-
-
67749117790
-
Partial penetrance facilitates developmental evolution in bacteria
-
A. Eldar, V.K. Chary, P. Xenopoulos, M.E. Fontes, O.C. Loson, J. Dworkin, P.J. Piggot, and M.B. Elowitz Partial penetrance facilitates developmental evolution in bacteria Nature 460 2009 510 514
-
(2009)
Nature
, vol.460
, pp. 510-514
-
-
Eldar, A.1
Chary, V.K.2
Xenopoulos, P.3
Fontes, M.E.4
Loson, O.C.5
Dworkin, J.6
Piggot, P.J.7
Elowitz, M.B.8
-
58
-
-
54449085511
-
A channel connecting the mother cell and forespore during bacterial endospore formation
-
J. Meisner, X. Wang, M. Serrano, A.O. Henriques, and C.P. Moran Jr. A channel connecting the mother cell and forespore during bacterial endospore formation Proc. Natl. Acad. Sci. USA 105 2008 15100 15105
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 15100-15105
-
-
Meisner, J.1
Wang, X.2
Serrano, M.3
Henriques, A.O.4
Moran Jr., C.P.5
-
59
-
-
47249121296
-
A novel pathway of intercellular signalling in Bacillus subtilis involves a protein with similarity to a component of type III secretion channels
-
A.H. Camp, and R. Losick A novel pathway of intercellular signalling in Bacillus subtilis involves a protein with similarity to a component of type III secretion channels Mol. Microbiol. 69 2008 402 417
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 402-417
-
-
Camp, A.H.1
Losick, R.2
-
60
-
-
10044268409
-
Zipper-like interaction between proteins in adjacent daughter cells mediates protein localization
-
B. Blaylock, X. Jiang, A. Rubio, C.P. Moran Jr., and K. Pogliano Zipper-like interaction between proteins in adjacent daughter cells mediates protein localization Genes Dev. 18 2004 2916 2928
-
(2004)
Genes Dev.
, vol.18
, pp. 2916-2928
-
-
Blaylock, B.1
Jiang, X.2
Rubio, A.3
Moran Jr., C.P.4
Pogliano, K.5
-
61
-
-
65249114670
-
A feeding tube model for activation of a cell-specific transcription factor during sporulation in Bacillus subtilis
-
A.H. Camp, and R. Losick A feeding tube model for activation of a cell-specific transcription factor during sporulation in Bacillus subtilis Genes Dev. 23 2009 1014 1024
-
(2009)
Genes Dev.
, vol.23
, pp. 1014-1024
-
-
Camp, A.H.1
Losick, R.2
-
62
-
-
68249127846
-
Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis
-
T. Doan, C. Morlot, J. Meisner, M. Serrano, A.O. Henriques, C.P. Moran Jr., and D.Z. Rudner Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis PLoS Genet. 5 2009 e1000566
-
(2009)
PLoS Genet.
, vol.5
, pp. 1000566
-
-
Doan, T.1
Morlot, C.2
Meisner, J.3
Serrano, M.4
Henriques, A.O.5
Moran Jr., C.P.6
Rudner, D.Z.7
-
63
-
-
0033593022
-
A family of membrane-embedded metalloproteases involved in regulated proteolysis of membrane-associated transcription factors
-
D.Z. Rudner, P. Fawcett, and R. Losick A family of membrane-embedded metalloproteases involved in regulated proteolysis of membrane-associated transcription factors Proc. Natl. Acad. Sci. USA 96 1999 14765 14770
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14765-14770
-
-
Rudner, D.Z.1
Fawcett, P.2
Losick, R.3
-
64
-
-
70349488828
-
Intramembrane proteolytic cleavage of a membrane-tethered transcription factor by a metalloprotease depends on ATP
-
R. Zhou, C. Cusumano, D. Sui, R.M. Garavito, and L. Kroos Intramembrane proteolytic cleavage of a membrane-tethered transcription factor by a metalloprotease depends on ATP Proc. Natl. Acad. Sci. USA 106 2009 16174 16179
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 16174-16179
-
-
Zhou, R.1
Cusumano, C.2
Sui, D.3
Garavito, R.M.4
Kroos, L.5
-
65
-
-
0025303604
-
A forespore checkpoint for mother cell gene expression during development in B. subtilis
-
S. Cutting, V. Oke, A. Driks, R. Losick, S. Lu, and L. Kroos A forespore checkpoint for mother cell gene expression during development in B. subtilis Cell 62 1990 239 250
-
(1990)
Cell
, vol.62
, pp. 239-250
-
-
Cutting, S.1
Oke, V.2
Driks, A.3
Losick, R.4
Lu, S.5
Kroos, L.6
-
66
-
-
0026724088
-
Characterization of bofA, a gene involved in intercompartmental regulation of pro-sigma K processing during sporulation in Bacillus subtilis
-
E. Ricca, S. Cutting, and R. Losick Characterization of bofA, a gene involved in intercompartmental regulation of pro-sigma K processing during sporulation in Bacillus subtilis J. Bacteriol. 174 1992 3177 3184
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3177-3184
-
-
Ricca, E.1
Cutting, S.2
Losick, R.3
-
67
-
-
0026029387
-
Forespore-specific transcription of a gene in the signal transduction pathway that governs Pro-sigma K processing in Bacillus subtilis
-
S. Cutting, A. Driks, R. Schmidt, B. Kunkel, and R. Losick Forespore-specific transcription of a gene in the signal transduction pathway that governs Pro-sigma K processing in Bacillus subtilis Genes Dev. 5 1991 456 466
-
(1991)
Genes Dev.
, vol.5
, pp. 456-466
-
-
Cutting, S.1
Driks, A.2
Schmidt, R.3
Kunkel, B.4
Losick, R.5
-
68
-
-
0025637607
-
Processing of the mother-cell sigma factor, sigma K, may depend on events occurring in the forespore during Bacillus subtilis development
-
S. Lu, R. Halberg, and L. Kroos Processing of the mother-cell sigma factor, sigma K, may depend on events occurring in the forespore during Bacillus subtilis development Proc. Natl. Acad. Sci. USA 87 1990 9722 9726
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 9722-9726
-
-
Lu, S.1
Halberg, R.2
Kroos, L.3
-
69
-
-
58149483354
-
Transcriptome divergence and the loss of plasticity in Bacillus subtilis after 6,000 generations of evolution under relaxed selection for sporulation
-
H. Maughan, C.W. Birky Jr., and W.L. Nicholson Transcriptome divergence and the loss of plasticity in Bacillus subtilis after 6,000 generations of evolution under relaxed selection for sporulation J. Bacteriol. 191 2009 428 433
-
(2009)
J. Bacteriol.
, vol.191
, pp. 428-433
-
-
Maughan, H.1
Birky Jr., C.W.2
Nicholson, W.L.3
-
70
-
-
30544443489
-
A comparative genomic view of clostridial sporulation and physiology
-
C.J. Paredes, K.V. Alsaker, and E.T. Papoutsakis A comparative genomic view of clostridial sporulation and physiology Nat. Rev. Microbiol. 3 2005 969 978
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 969-978
-
-
Paredes, C.J.1
Alsaker, K.V.2
Papoutsakis, E.T.3
-
71
-
-
67649823687
-
Sporulation in mycobacteria
-
J. Ghosh, P. Larsson, B. Singh, B.M. Pettersson, N.M. Islam, S.N. Sarkar, S. Dasgupta, and L.A. Kirsebom Sporulation in mycobacteria Proc. Natl. Acad. Sci. USA 106 2009 10781 10786
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 10781-10786
-
-
Ghosh, J.1
Larsson, P.2
Singh, B.3
Pettersson, B.M.4
Islam, N.M.5
Sarkar, S.N.6
Dasgupta, S.7
Kirsebom, L.A.8
-
72
-
-
76249099404
-
Do mycobacteria produce endospores?
-
B.A. Traag, A. Driks, P. Stragier, W. Bitter, G. Broussard, G. Hatfull, F. Chu, K.N. Adams, L. Ramakrishnan, and R. Losick Do mycobacteria produce endospores? Proc. Natl. Acad. Sci. USA 107 2010 878 881
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 878-881
-
-
Traag, B.A.1
Driks, A.2
Stragier, P.3
Bitter, W.4
Broussard, G.5
Hatfull, G.6
Chu, F.7
Adams, K.N.8
Ramakrishnan, L.9
Losick, R.10
-
74
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
DOI 10.1038/36786
-
F. Kunst, N. Ogasawara, I. Moszer, A.M. Albertini, G. Alloni, V. Azevedo, M.G. Bertero, P. Bessieres, A. Bolotin, and S. Borchert The complete genome sequence of the gram-positive bacterium Bacillus subtilis Nature 390 1997 249 256 (Pubitemid 27513299)
-
(1997)
Nature
, vol.390
, Issue.6657
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
Bertero, M.G.7
Bessieres, P.8
Bolotin, A.9
Borchert, S.10
Borriss, R.11
Boursier, L.12
Brans, A.13
Braun, M.14
Brignell, S.C.15
Bron, S.16
Brouillet, S.17
Bruschi, C.V.18
Caldwell, B.19
Capuano, V.20
Carter, N.M.21
Choi, S.-K.22
Codani, J.-J.23
Connerton, I.F.24
Cummings, N.J.25
Daniel, R.A.26
Denizot, F.27
Devine, K.M.28
Dusterhoft, A.29
Ehrlich, S.D.30
Emmerson, P.T.31
Entian, K.D.32
Errington, J.33
Fabret, C.34
Ferrari, E.35
Foulger, D.36
Fritz, C.37
Fujita, M.38
Fujita, Y.39
Fuma, S.40
Galizzi, A.41
Galleron, N.42
Ghim, S.-Y.43
Glaser, P.44
Goffeau, A.45
Golightly, E.J.46
Grandi, G.47
Guiseppi, G.48
Guy, B.J.49
Haga, K.50
Haiech, J.51
Harwood, C.R.52
Henaut, A.53
Hilbert, H.54
Holsappel, S.55
Hosono, S.56
Hullo, M.-F.57
Itaya, M.58
Jones, L.59
Joris, B.60
Karamata, D.61
Kasahara, Y.62
Klaerr-Blanchard, M.63
Klein, C.64
Kobayashi, Y.65
Koetter, P.66
Koningstein, G.67
Krogh, S.68
Kumano, M.69
Kurita, K.70
Lapidus, A.71
Lardinois, S.72
Lauber, J.73
Lazarevic, V.74
Lee, S.-M.75
Levine, A.76
Liu, H.77
Masuda, S.78
Mauel, C.79
Medigue, C.80
Medina, N.81
Mellado, R.P.82
Mizuno, M.83
Moestl, D.84
Nakai, S.85
Noback, M.86
Noone, D.87
O'Reilly, M.88
Ogawa, K.89
Ogiwara, A.90
Oudega, B.91
Park, S.-H.92
Parro, V.93
Pohl, T.M.94
Portetelle, D.95
Porwollik, S.96
Prescott, A.M.97
Presecan, E.98
Pujic, P.99
more..
-
76
-
-
44449128118
-
The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment
-
L.D. Alcaraz, G. Olmedo, G. Bonilla, R. Cerritos, G. Hernandez, A. Cruz, E. Ramirez, C. Putonti, B. Jimenez, and E. Martinez The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment Proc. Natl. Acad. Sci. USA 105 2008 5803 5808
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 5803-5808
-
-
Alcaraz, L.D.1
Olmedo, G.2
Bonilla, G.3
Cerritos, R.4
Hernandez, G.5
Cruz, A.6
Ramirez, E.7
Putonti, C.8
Jimenez, B.9
Martinez, E.10
-
77
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations. Int
-
M.D. Collins, P.A. Lawson, A. Willems, J.J. Cordoba, J. Fernandez-Garayzabal, P. Garcia, J. Cai, H. Hippe, and J.A. Farrow The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J. Syst. Bacteriol. 44 1994 812 826
-
(1994)
J. Syst. Bacteriol.
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.9
-
78
-
-
34548216842
-
Life in hot carbon monoxide: The complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
-
M. Wu, Q. Ren, A.S. Durkin, S.C. Daugherty, L.M. Brinkac, R.J. Dodson, R. Madupu, S.A. Sullivan, J.F. Kolonay, and W.C. Nelson Life in hot carbon monoxide: The complete genome sequence of Carboxydothermus hydrogenoformans Z-2901 PLoS Genet. 1 2005 e65
-
(2005)
PLoS Genet.
, vol.1
, pp. 65
-
-
Wu, M.1
Ren, Q.2
Durkin, A.S.3
Daugherty, S.C.4
Brinkac, L.M.5
Dodson, R.J.6
Madupu, R.7
Sullivan, S.A.8
Kolonay, J.F.9
Nelson, W.C.10
-
79
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
80
-
-
55449129670
-
Prediction of transcriptional terminators in Bacillus subtilis and related species
-
M.J. De Hoon, Y. Makita, K. Nakai, and S. Miyano Prediction of transcriptional terminators in Bacillus subtilis and related species PLoS Comput. Biol. 1 2005 e25
-
(2005)
PLoS Comput. Biol.
, vol.1
, pp. 25
-
-
De Hoon, M.J.1
Makita, Y.2
Nakai, K.3
Miyano, S.4
-
81
-
-
49049116154
-
The transcriptional program underlying the physiology of clostridial sporulation
-
S.W. Jones, C.J. Paredes, B. Tracy, N. Cheng, R. Sillers, R.S. Senger, and E.T. Papoutsakis The transcriptional program underlying the physiology of clostridial sporulation Genome Biol. 9 2008 R114
-
(2008)
Genome Biol.
, vol.9
, pp. 114
-
-
Jones, S.W.1
Paredes, C.J.2
Tracy, B.3
Cheng, N.4
Sillers, R.5
Senger, R.S.6
Papoutsakis, E.T.7
-
82
-
-
0036427575
-
Evolution of signalling in the sporulation phosphorelay
-
K. Stephenson, and J.A. Hoch Evolution of signalling in the sporulation phosphorelay Mol. Microbiol. 46 2002 297 304
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 297-304
-
-
Stephenson, K.1
Hoch, J.A.2
-
83
-
-
0038349278
-
Efficient sporulation in Clostridium difficile requires disruption of the sigmaK gene
-
J.D. Haraldsen, and A.L. Sonenshein Efficient sporulation in Clostridium difficile requires disruption of the sigmaK gene Mol. Microbiol. 48 2003 811 821
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 811-821
-
-
Haraldsen, J.D.1
Sonenshein, A.L.2
-
84
-
-
65249122396
-
Sporulation and enterotoxin (CPE) synthesis are controlled by the sporulation-specific sigma factors SigE and SigK in Clostridium perfringens
-
K.H. Harry, R. Zhou, L. Kroos, and S.B. Melville Sporulation and enterotoxin (CPE) synthesis are controlled by the sporulation-specific sigma factors SigE and SigK in Clostridium perfringens J. Bacteriol. 191 2009 2728 2742
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2728-2742
-
-
Harry, K.H.1
Zhou, R.2
Kroos, L.3
Melville, S.B.4
-
85
-
-
0028935455
-
SubtiList: A relational database for the Bacillus subtilis genome
-
I. Moszer, P. Glaser, and A. Danchin SubtiList: a relational database for the Bacillus subtilis genome Microbiology 141 1995 261 268
-
(1995)
Microbiology
, vol.141
, pp. 261-268
-
-
Moszer, I.1
Glaser, P.2
Danchin, A.3
-
86
-
-
84908087962
-
-
Database (Oxford) bap012 2009
-
Florez, L.A., Roppel, S.F., Schmeisky, A.G., Lammers, C.R., and Stulke, J. (2009). A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. Database (Oxford) 2009, bap012.
-
(2009)
A Community-curated Consensual Annotation That Is Continuously Updated: The Bacillus Subtilis Centred Wiki SubtiWiki
-
-
Florez, L.A.1
Roppel, S.F.2
Schmeisky, A.G.3
Lammers, C.R.4
Stulke, J.5
-
87
-
-
38549159432
-
GenoList: An integrated environment for comparative analysis of microbial genomes
-
P. Lechat, L. Hummel, S. Rousseau, and I. Moszer GenoList: an integrated environment for comparative analysis of microbial genomes Nucleic Acids Res. 36 2008 D469 D474
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Lechat, P.1
Hummel, L.2
Rousseau, S.3
Moszer, I.4
-
88
-
-
77950456925
-
Automatic policing of biochemical annotations using genomic correlations
-
T.L. Hsiao, O. Revelles, L. Chen, U. Sauer, and D. Vitkup Automatic policing of biochemical annotations using genomic correlations Nat. Chem. Biol. 6 2010 34 40
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 34-40
-
-
Hsiao, T.L.1
Revelles, O.2
Chen, L.3
Sauer, U.4
Vitkup, D.5
-
89
-
-
34547874585
-
Divergence of transcription factor binding sites across related yeast species
-
A.R. Borneman, T.A. Gianoulis, Z.D. Zhang, H. Yu, J. Rozowsky, M.R. Seringhaus, L.Y. Wang, M. Gerstein, and M. Snyder Divergence of transcription factor binding sites across related yeast species Science 317 2007 815 819
-
(2007)
Science
, vol.317
, pp. 815-819
-
-
Borneman, A.R.1
Gianoulis, T.A.2
Zhang, Z.D.3
Yu, H.4
Rozowsky, J.5
Seringhaus, M.R.6
Wang, L.Y.7
Gerstein, M.8
Snyder, M.9
-
91
-
-
71149089027
-
Network design principles from the sea urchin embryo
-
E.H. Davidson Network design principles from the sea urchin embryo Curr. Opin. Genet. Dev. 19 2009 535 540
-
(2009)
Curr. Opin. Genet. Dev.
, vol.19
, pp. 535-540
-
-
Davidson, E.H.1
-
92
-
-
32444446240
-
Gene regulatory networks and the evolution of animal body plans
-
E.H. Davidson, and D.H. Erwin Gene regulatory networks and the evolution of animal body plans Science 311 2006 796 800
-
(2006)
Science
, vol.311
, pp. 796-800
-
-
Davidson, E.H.1
Erwin, D.H.2
-
93
-
-
77950906102
-
Evolutionary innovation and stability in animal gene networks
-
E.H. Davidson, and D.H. Erwin Evolutionary innovation and stability in animal gene networks J. Exp. Zool. B Mol. Dev. Evol. 314 2010 182 186
-
(2010)
J. Exp. Zool. B Mol. Dev. Evol.
, vol.314
, pp. 182-186
-
-
Davidson, E.H.1
Erwin, D.H.2
-
97
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
J. Felsenstein PHYLIP - Phylogeny Inference Package (Version 3.2) Cladistics 5 1989 164 166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
98
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
J.R. Cole, Q. Wang, E. Cardenas, J. Fish, B. Chai, R.J. Farris, A.S. Kulam-Syed-Mohideen, D.M. McGarrell, T. Marsh, and G.M. Garrity The Ribosomal Database Project: improved alignments and new tools for rRNA analysis Nucleic Acids Res. 37 2009 D141 D145
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
|