Bacterial phylogeny based on comparative sequence analysis

Electrophoresis

Volumn 19, Issue 4, 1998, Pages 554-568

  Ludwig, Wolfgang ^a   Strunk, Oliver ^b   Klugbauer, Sabine ^b   Klugbauer, Norbert ^b   Weizenegger, Michael ^b   Neumaier, Judith ^b   Bachleitner, Marianne ^b   Schleifer, Karl Heinz ^b  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b NONE

Author keywords

ATPase; Bacteria; Elongation factor Tu; Phylogeny; Sequence data analysis; Tree reconstruction

Indexed keywords

BACTERIA; DATA HANDLING; INFORMATION ANALYSIS; RNA; TREES (MATHEMATICS);

ATPASES; COMPARATIVE SEQUENCE ANALYSIS; ELONGATION FACTOR TU; PHYLOGENETIC INFORMATION; PHYLOGENETICS; PHYLOGENY; SEQUENCE DATA; SEQUENCE DATA ANALYSE; SMALL SUBUNITS; TREE RECONSTRUCTION;

PHYLOGENETIC;

ADENOSINE TRIPHOSPHATASE; BACTERIAL RNA; ELONGATION FACTOR TU; RIBOSOME RNA; RNA 16S; RNA 23S;

BACTERIAL GENE; COMPUTER PROGRAM; NONHUMAN; PHYLOGENY; REVIEW; RNA SEQUENCE; STATISTICS; TAXONOMY;

EID: 0031895203     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.1150190416     Document Type: Review

References (28)

1. Fox, G. E., Pechman, K. J., Woese, C. R., Int. J. Syst. Bacteriol. 1977, 27, 44-57.
2. Woese, C. R., Microbiol. Rev. 1987, 51, 221-271.
3. Ludwig, W., in: Akkermans, A. D. L. (Ed.), Kluwer 1995, 3.3.5, pp. 1-22.
4. Olsen, G. J., Woese, C. R., FASEB J. 1993, 7, 113-123.
5. Olsen, G. J., Woese, C. R., Overbeek, R., J. Bacteriol. 1994, 176, 1-6.
6. Ludwig, W., Schleifer, K. H., FEMS Microbiol. Rev. 1994, 15, 155-173.
7. Skerman, V. D. B., McGowan, V., Sneath, P. H. A., Int. J. Syst. Bacteriol. 1980, 30, 225-420.
8. Schleifer, K. H., Ludwig, W., Amann, R., in: Goodfellow, M., McDonnell, O. (Eds.). Handbook of New Bacterial Systematics, Academic Press, London, 1993, pp. 463-510.
9. Amann, R., Ludwig, W., Schleifer, K. H., Microbiol. Rev. 1995, 59, 143-169.
10. Brockmann, E., Jacobsen, B. L., Hertel, C., Ludwig, W., Schleifer, K. H., Syst. Microbiol. 1996, 19, 203-212.
11. Ludwig, W., Amann, R., Martinez-Romero, E., Schönhuber, W., Bauer, S., Neef, A., Schleifer, K. H., in: Hardarson, G., Broughton, W. (Eds.), Molecular Biology in Soil Microbial Ecology, Kluwer, 1997, in press
12. Lipshutz, R. J., Morris, D., Chee, M., Hubbell, E., Konzal, M. J., Shah, N., Shen, N., Yang, R., Fodor, S. P. A., BioTechniques 1995, 19, 442-447.
13. Ludwig, W., Neumaier, J., Klugbauer, N., Brockmann, E., Roller, C., Jilg, S., Reetz, K., Schachtner, I., Ludvigsen, A., Bachleitner, M., Fischer, U., Schleifer, K. H., Ant. Leeuwenh. 1993, 64, 285-305.
14. Swofford, D. L., Olsen, G. J., Waddell, P. J., Hillis, D. M., in: Hillis, D. M., Moritz, C., Mabel, B. K. (Eds.), Molecular Systematics, Sinauer, Sunderland, MA 1996, pp. 407-514.
15. Jukes, T. H., Cantor, C. R., in: Munro, H. N. (Ed.), Mammalian Protein Metabolism, Academic Press, New York 1969, pp. 21-132.
16. Strunk, O., Gross, O., Reichel, B., May, M., Hermann, S., Stuckmann, N., Nonhoff, B., Lenke, M., Ginhart, A., Vilbig, A., Ludwig, T., Bode, A., Schleifer, K. H., Ludwig, W., Nucleic Acids Res. submitted.
17. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J., Woese, C. R., Nucleic Acids Res. 1996, 24, 82-85.
18. Van de Peer, Y. S., Nicolai, P., De Rijk, R., De Wachter, R., Nucleic Acids Res. 1996, 24, 86-91.
19. Stackebrandt, E., Goebel, B. M., Int. J. Syst. Bacteriol. 1994, 44, 846-849.
20. Hiorns, W. D., Methe, B. A., Nierzwicki-Bauer, S. A., Zehr, J. P., Appl. Environ. Microbiol. 1997, 63, 2957-2960.
21. Ludwig, W., Rossello-Mora, R., Aznar, R., Klugbauer, S., Spring, S., Reetz, K., Beimfohr, C., Brockmann, E., Kirchhof, G., Dorn, S., Bachleitner, M., Klugbauer, N., Springer, N., Lane, D., Nietupsky, R., Weizenegger, M., Schleifer, K. H., Syst. Appl. Microbiol. 1995, 18, 164-188.
22. Tsustumi, S., Denda, K., Yokoyama, K., Oshima, T., Date, T., Yoshida, M., Biochim. Biophys. Acta 1991, 1098, 13-20.
23. Kakinuma, Y., Igarashi, K., Konishi, K., Yamamoto, I., FEBS Lett. 1991, 292, 264-268.
24. Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R., Ludwig, W., Backhaus, H., J. Bacteriol. 1996, 178, 5636-5643.
25. Wayne, L. G. Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., Trüper, H. G., Int. J. Syst. Bacteriol. 1987, 44, 846-849.
26. Kersters, K., Ludwig, W., Vancanneyt, M., DeVos, P. Gilis, M., Schleifer, K. H., Syst. Appl. Microbiol. 1996, 19, 465-476.
27. Schöniger, M., von Haeseler, A., Mol. Phyl. Evol. 1994, 3, 240-247.
28. Ludwig, W. Bauer, S., Bauer, M., Held, I., Kirchhof, G., Schulze, R., Huber, I., Spring, S., Hartmann, A., Schleifer, K. H., FEMS Microbiol.Lett. 1997, 153, 181-190.