메뉴 건너뛰기




Volumn 14, Issue 11, 2012, Pages 2870-2890

Genomic determinants of sporulation in Bacilli and Clostridia: Towards the minimal set of sporulation-specific genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACILLUS; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL SPORE; CLOSTRIDIUM; GENETICS; GENOME SIZE; GENOMICS; PHYLOGENY;

EID: 84867988931     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2012.02841.x     Document Type: Article
Times cited : (225)

References (146)
  • 1
    • 26444483354 scopus 로고    scopus 로고
    • Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum
    • Alsaker, K.V., and Papoutsakis, E.T. (2005) Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum. J Bacteriol 187: 7103-7118.
    • (2005) J Bacteriol , vol.187 , pp. 7103-7118
    • Alsaker, K.V.1    Papoutsakis, E.T.2
  • 3
    • 0035043345 scopus 로고    scopus 로고
    • The Bacillus subtilis yabQ gene is essential for formation of the spore cortex
    • Asai, K., Takamatsu, H., Iwano, M., Kodama, T., Watabe, K., and Ogasawara, N. (2001) The Bacillus subtilis yabQ gene is essential for formation of the spore cortex. Microbiology 147: 919-927.
    • (2001) Microbiology , vol.147 , pp. 919-927
    • Asai, K.1    Takamatsu, H.2    Iwano, M.3    Kodama, T.4    Watabe, K.5    Ogasawara, N.6
  • 5
    • 67650741685 scopus 로고    scopus 로고
    • From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
    • Barbe, V., Cruveiller, S., Kunst, F., Lenoble, P., Meurice, G., Sekowska, A., etal. (2009) From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology 155: 1758-1775.
    • (2009) Microbiology , vol.155 , pp. 1758-1775
    • Barbe, V.1    Cruveiller, S.2    Kunst, F.3    Lenoble, P.4    Meurice, G.5    Sekowska, A.6
  • 6
    • 79959655385 scopus 로고    scopus 로고
    • Telling the whole story in a 10,000-genome world
    • Beiko, R.G. (2011) Telling the whole story in a 10, 000-genome world. Biol Direct 6: 34.
    • (2011) Biol Direct , vol.6 , pp. 34
    • Beiko, R.G.1
  • 7
    • 33748987913 scopus 로고    scopus 로고
    • Transcriptional profiling of the Bacillus anthracis life cycle in vitro and an implied model for regulation of spore formation
    • Bergman, N.H., Anderson, E.C., Swenson, E.E., Niemeyer, M.M., Miyoshi, A.D., and Hanna, P.C. (2006) Transcriptional profiling of the Bacillus anthracis life cycle in vitro and an implied model for regulation of spore formation. J Bacteriol 188: 6092-6100.
    • (2006) J Bacteriol , vol.188 , pp. 6092-6100
    • Bergman, N.H.1    Anderson, E.C.2    Swenson, E.E.3    Niemeyer, M.M.4    Miyoshi, A.D.5    Hanna, P.C.6
  • 8
    • 10044268409 scopus 로고    scopus 로고
    • Zipper-like interaction between proteins in adjacent daughter cells mediates protein localization
    • Blaylock, B., Jiang, X., Rubio, A., Moran, C.P., Jr, and Pogliano, K. (2004) Zipper-like interaction between proteins in adjacent daughter cells mediates protein localization. Genes Dev 18: 2916-2928.
    • (2004) Genes Dev , vol.18 , pp. 2916-2928
    • Blaylock, B.1    Jiang, X.2    Rubio, A.3    Moran Jr, C.P.4    Pogliano, K.5
  • 9
    • 79952387638 scopus 로고    scopus 로고
    • Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus
    • Blumer-Schuette, S.E., Ozdemir, I., Mistry, D., Lucas, S., Lapidus, A., Cheng, J.F., etal. (2011) Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus. J Bacteriol 193: 1483-1484.
    • (2011) J Bacteriol , vol.193 , pp. 1483-1484
    • Blumer-Schuette, S.E.1    Ozdemir, I.2    Mistry, D.3    Lucas, S.4    Lapidus, A.5    Cheng, J.F.6
  • 10
    • 0033022027 scopus 로고    scopus 로고
    • Caldicellulosiruptor kristjanssonii sp. nov., a cellulolytic, extremely thermophilic, anaerobic bacterium
    • Bredholt, S., Sonne-Hansen, J., Nielsen, P., Mathrani, I.M., and Ahring, B.K. (1999) Caldicellulosiruptor kristjanssonii sp. nov., a cellulolytic, extremely thermophilic, anaerobic bacterium. Int J Syst Bacteriol 49: 991-996.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 991-996
    • Bredholt, S.1    Sonne-Hansen, J.2    Nielsen, P.3    Mathrani, I.M.4    Ahring, B.K.5
  • 12
    • 77955297300 scopus 로고    scopus 로고
    • Complete genome sequence of the electricity-producing 'Thermincola potens' strain JR
    • Byrne-Bailey, K.G., Wrighton, K.C., Melnyk, R.A., Agbo, P., Hazen, T.C., and Coates, J.D. (2010) Complete genome sequence of the electricity-producing 'Thermincola potens' strain JR. J Bacteriol 192: 4078-4079.
    • (2010) J Bacteriol , vol.192 , pp. 4078-4079
    • Byrne-Bailey, K.G.1    Wrighton, K.C.2    Melnyk, R.A.3    Agbo, P.4    Hazen, T.C.5    Coates, J.D.6
  • 13
    • 41949110216 scopus 로고    scopus 로고
    • SpoIIQ anchors membrane proteins on both sides of the sporulation septum in Bacillus subtilis
    • Campo, N., Marquis, K.A., and Rudner, D.Z. (2008) SpoIIQ anchors membrane proteins on both sides of the sporulation septum in Bacillus subtilis. J Biol Chem 283: 4975-4982.
    • (2008) J Biol Chem , vol.283 , pp. 4975-4982
    • Campo, N.1    Marquis, K.A.2    Rudner, D.Z.3
  • 14
    • 0017087129 scopus 로고
    • Evidence for a complex life cycle and endospore formation in the attached, filamentous, segmented bacterium from murine ileum
    • Chase, D.G., and Erlandsen, S.L. (1976) Evidence for a complex life cycle and endospore formation in the attached, filamentous, segmented bacterium from murine ileum. J Bacteriol 127: 572-583.
    • (1976) J Bacteriol , vol.127 , pp. 572-583
    • Chase, D.G.1    Erlandsen, S.L.2
  • 15
    • 80053583782 scopus 로고    scopus 로고
    • Complete genome sequence of Alicyclobacillus acidocaldarius strain Tc-4-1
    • Chen, Y., He, Y., Zhang, B., Yang, J., Li, W., Dong, Z., and Hu, S. (2011) Complete genome sequence of Alicyclobacillus acidocaldarius strain Tc-4-1. J Bacteriol 193: 5602-5603.
    • (2011) J Bacteriol , vol.193 , pp. 5602-5603
    • Chen, Y.1    He, Y.2    Zhang, B.3    Yang, J.4    Li, W.5    Dong, Z.6    Hu, S.7
  • 16
    • 34047247722 scopus 로고    scopus 로고
    • Impact of membrane fusion and proteolysis on SpoIIQ dynamics and interaction with SpoIIIAH
    • Chiba, S., Coleman, K., and Pogliano, K. (2007) Impact of membrane fusion and proteolysis on SpoIIQ dynamics and interaction with SpoIIIAH. J Biol Chem 282: 2576-2586.
    • (2007) J Biol Chem , vol.282 , pp. 2576-2586
    • Chiba, S.1    Coleman, K.2    Pogliano, K.3
  • 17
    • 53749096964 scopus 로고    scopus 로고
    • Environmental genomics reveals a single-species ecosystem deep within Earth
    • Chivian, D., Brodie, E.L., Alm, E.J., Culley, D.E., Dehal, P.S., DeSantis, T.Z., etal. (2008) Environmental genomics reveals a single-species ecosystem deep within Earth. Science 322: 275-278.
    • (2008) Science , vol.322 , pp. 275-278
    • Chivian, D.1    Brodie, E.L.2    Alm, E.J.3    Culley, D.E.4    Dehal, P.S.5    DeSantis, T.Z.6
  • 19
    • 14744274820 scopus 로고    scopus 로고
    • Subcellular localization of a sporulation membrane protein is achieved through a network of interactions along and across the septum
    • Doan, T., Marquis, K.A., and Rudner, D.Z. (2005) Subcellular localization of a sporulation membrane protein is achieved through a network of interactions along and across the septum. Mol Microbiol 55: 1767-1781.
    • (2005) Mol Microbiol , vol.55 , pp. 1767-1781
    • Doan, T.1    Marquis, K.A.2    Rudner, D.Z.3
  • 20
    • 68249127846 scopus 로고    scopus 로고
    • Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis
    • Doan, T., Morlot, C., Meisner, J., Serrano, M., Henriques, A.O., Moran, C.P., Jr, and Rudner, D.Z. (2009) Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis. PLoS Genet 5: e1000566.
    • (2009) PLoS Genet , vol.5
    • Doan, T.1    Morlot, C.2    Meisner, J.3    Serrano, M.4    Henriques, A.O.5    Moran Jr, C.P.6    Rudner, D.Z.7
  • 21
    • 0002092720 scopus 로고    scopus 로고
    • Proteins of the spore core and coat
    • Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC, USA: ASM Press -
    • Driks, A. (2002) Proteins of the spore core and coat. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC, USA: ASM Press, pp. 526-535.
    • (2002) Bacillus subtilis and Its Closest Relatives: From Genes to Cells , pp. 526-535
    • Driks, A.1
  • 22
    • 41349120749 scopus 로고    scopus 로고
    • Fermentative butanol production: bulk chemical and biofuel
    • Dürre, P. (2008) Fermentative butanol production: bulk chemical and biofuel. Ann N Y Acad Sci 1125: 353-362.
    • (2008) Ann N Y Acad Sci , vol.1125 , pp. 353-362
    • Dürre, P.1
  • 24
    • 8844240734 scopus 로고    scopus 로고
    • The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
    • Eichenberger, P., Fujita, M., Jensen, S.T., Conlon, E.M., Rudner, D.Z., Wang, S.T., etal. (2004) The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. PLoS Biol 2: e328.
    • (2004) PLoS Biol , vol.2
    • Eichenberger, P.1    Fujita, M.2    Jensen, S.T.3    Conlon, E.M.4    Rudner, D.Z.5    Wang, S.T.6
  • 25
    • 1842613501 scopus 로고    scopus 로고
    • Regulation of endospore formation in Bacillus subtilis
    • Errington, J. (2003) Regulation of endospore formation in Bacillus subtilis. Nat Rev Microbiol 1: 117-126.
    • (2003) Nat Rev Microbiol , vol.1 , pp. 117-126
    • Errington, J.1
  • 26
    • 0034608820 scopus 로고    scopus 로고
    • The transcriptional profile of early to middle sporulation in Bacillus subtilis
    • Fawcett, P., Eichenberger, P., Losick, R., and Youngman, P. (2000) The transcriptional profile of early to middle sporulation in Bacillus subtilis. Proc Natl Acad Sci USA 97: 8063-8068.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8063-8068
    • Fawcett, P.1    Eichenberger, P.2    Losick, R.3    Youngman, P.4
  • 27
    • 84856562355 scopus 로고    scopus 로고
    • The NCBI taxonomy database
    • Federhen, S. (2012) The NCBI taxonomy database. Nucleic Acids Res 40: D136-D143.
    • (2012) Nucleic Acids Res , vol.40
    • Federhen, S.1
  • 28
    • 0022490315 scopus 로고
    • Genes for Bacillus megaterium small, acid-soluble spore proteins: cloning and nucleotide sequence of three additional genes from this multigene family
    • Fliss, E.R., Loshon, C.A., and Setlow, P. (1986) Genes for Bacillus megaterium small, acid-soluble spore proteins: cloning and nucleotide sequence of three additional genes from this multigene family. J Bacteriol 165: 467-473.
    • (1986) J Bacteriol , vol.165 , pp. 467-473
    • Fliss, E.R.1    Loshon, C.A.2    Setlow, P.3
  • 29
    • 77957664849 scopus 로고    scopus 로고
    • Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence
    • Fonknechten, N., Chaussonnerie, S., Tricot, S., Lajus, A., Andreesen, J.R., Perchat, N., etal. (2010) Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence. BMC Genomics 11: 555.
    • (2010) BMC Genomics , vol.11 , pp. 555
    • Fonknechten, N.1    Chaussonnerie, S.2    Tricot, S.3    Lajus, A.4    Andreesen, J.R.5    Perchat, N.6
  • 30
    • 27644443333 scopus 로고    scopus 로고
    • Molecular identification of bacteria associated with bacterial vaginosis
    • Fredricks, D.N., Fiedler, T.L., and Marrazzo, J.M. (2005) Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med 353: 1899-1911.
    • (2005) N Engl J Med , vol.353 , pp. 1899-1911
    • Fredricks, D.N.1    Fiedler, T.L.2    Marrazzo, J.M.3
  • 31
    • 33744983969 scopus 로고    scopus 로고
    • Structural classification of bacterial response regulators: diversity of output domains and domain combinations
    • Galperin, M.Y. (2006) Structural classification of bacterial response regulators: diversity of output domains and domain combinations. J Bacteriol 188: 4169-4182.
    • (2006) J Bacteriol , vol.188 , pp. 4169-4182
    • Galperin, M.Y.1
  • 32
    • 77949911836 scopus 로고    scopus 로고
    • Diversity of structure and function of response regulator output domains
    • Galperin, M.Y. (2010) Diversity of structure and function of response regulator output domains. Curr Opin Microbiol 13: 150-159.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 150-159
    • Galperin, M.Y.1
  • 36
    • 78649689623 scopus 로고    scopus 로고
    • Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production
    • Hemme, C.L., Mouttaki, H., Lee, Y.J., Zhang, G., Goodwin, L., Lucas, S., etal. (2010) Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. J Bacteriol 192: 6494-6496.
    • (2010) J Bacteriol , vol.192 , pp. 6494-6496
    • Hemme, C.L.1    Mouttaki, H.2    Lee, Y.J.3    Zhang, G.4    Goodwin, L.5    Lucas, S.6
  • 37
    • 0031955996 scopus 로고    scopus 로고
    • Involvement of superoxide dismutase in spore coat assembly in Bacillus subtilis
    • Henriques, A.O., Melsen, L.R., and Moran, C.P., Jr (1998) Involvement of superoxide dismutase in spore coat assembly in Bacillus subtilis. J Bacteriol 180: 2285-2291.
    • (1998) J Bacteriol , vol.180 , pp. 2285-2291
    • Henriques, A.O.1    Melsen, L.R.2    Moran Jr, C.P.3
  • 38
    • 60949087042 scopus 로고    scopus 로고
    • Bacillus subtilis isolated from the human gastrointestinal tract
    • Hong, H.A., Khaneja, R., Tam, N.M., Cazzato, A., Tan, S., Urdaci, M., etal. (2009) Bacillus subtilis isolated from the human gastrointestinal tract. Res Microbiol 160: 134-143.
    • (2009) Res Microbiol , vol.160 , pp. 134-143
    • Hong, H.A.1    Khaneja, R.2    Tam, N.M.3    Cazzato, A.4    Tan, S.5    Urdaci, M.6
  • 39
    • 77956533047 scopus 로고    scopus 로고
    • Hierarchical evolution of the bacterial sporulation network
    • de Hoon, M.J., Eichenberger, P., and Vitkup, D. (2010) Hierarchical evolution of the bacterial sporulation network. Curr Biol 20: R735-R745.
    • (2010) Curr Biol , vol.20
    • de Hoon, M.J.1    Eichenberger, P.2    Vitkup, D.3
  • 41
    • 41949083782 scopus 로고    scopus 로고
    • Complete genome sequence of the mosquitocidal bacterium Bacillus sphaericus C3-41 and comparison with those of closely related Bacillus species
    • Hu, X., Fan, W., Han, B., Liu, H., Zheng, D., Li, Q., etal. (2008) Complete genome sequence of the mosquitocidal bacterium Bacillus sphaericus C3-41 and comparison with those of closely related Bacillus species. J Bacteriol 190: 2892-2902.
    • (2008) J Bacteriol , vol.190 , pp. 2892-2902
    • Hu, X.1    Fan, W.2    Han, B.3    Liu, H.4    Zheng, D.5    Li, Q.6
  • 42
    • 0029932594 scopus 로고    scopus 로고
    • Formation of ammonium from nitrate during chemolithoautotrophic growth of the extremely thermophilic bacterium Ammonifex degensii gen. nov. sp. nov.
    • Huber, R., Rossnagel, P., Woese, C.R., Rachel, R., Langworthy, T.A., and Stetter, K.O. (1996) Formation of ammonium from nitrate during chemolithoautotrophic growth of the extremely thermophilic bacterium Ammonifex degensii gen. nov. sp. nov. Syst Appl Microbiol 19: 40-49.
    • (1996) Syst Appl Microbiol , vol.19 , pp. 40-49
    • Huber, R.1    Rossnagel, P.2    Woese, C.R.3    Rachel, R.4    Langworthy, T.A.5    Stetter, K.O.6
  • 44
    • 79961160010 scopus 로고    scopus 로고
    • Proteins involved in formation of the outermost layer of Bacillus subtilis spores
    • Imamura, D., Kuwana, R., Takamatsu, H., and Watabe, K. (2011) Proteins involved in formation of the outermost layer of Bacillus subtilis spores. J Bacteriol 193: 4075-4080.
    • (2011) J Bacteriol , vol.193 , pp. 4075-4080
    • Imamura, D.1    Kuwana, R.2    Takamatsu, H.3    Watabe, K.4
  • 47
    • 0019520495 scopus 로고
    • Acid-soluble spore proteins of Bacillus subtilis
    • Johnson, W.C., and Tipper, D.J. (1981) Acid-soluble spore proteins of Bacillus subtilis. J Bacteriol 146: 972-982.
    • (1981) J Bacteriol , vol.146 , pp. 972-982
    • Johnson, W.C.1    Tipper, D.J.2
  • 49
    • 84861342725 scopus 로고    scopus 로고
    • T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010
    • T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genomic Sci 5: 121-134.
    • (2011) Stand Genomic Sci , vol.5 , pp. 121-134
    • Klenk, H.1    Lapidus, A.2    Chertkov, O.3    Copeland, A.4    Glavina del Rio, T.5    Nolan, M.6
  • 50
    • 30444457865 scopus 로고    scopus 로고
    • The Bacillus subtilis spore coat provides 'eat resistance' during phagocytic predation by the protozoan Tetrahymena thermophila
    • Klobutcher, L.A., Ragkousi, K., and Setlow, P. (2006) The Bacillus subtilis spore coat provides 'eat resistance' during phagocytic predation by the protozoan Tetrahymena thermophila. Proc Natl Acad Sci USA 103: 165-170.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 165-170
    • Klobutcher, L.A.1    Ragkousi, K.2    Setlow, P.3
  • 51
    • 0031874929 scopus 로고    scopus 로고
    • Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov.
    • Kloos, W.E., Ballard, D.N., George, C.G., Webster, J.A., Hubner, R.J., Ludwig, W., etal. (1998) Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov. Int J Syst Bacteriol 48: 859-877.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 859-877
    • Kloos, W.E.1    Ballard, D.N.2    George, C.G.3    Webster, J.A.4    Hubner, R.J.5    Ludwig, W.6
  • 53
    • 77954198131 scopus 로고    scopus 로고
    • A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
    • Kristensen, D.M., Kannan, L., Coleman, M.K., Wolf, Y.I., Sorokin, A., Koonin, E.V., and Mushegian, A. (2010) A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. Bioinformatics 26: 1481-1487.
    • (2010) Bioinformatics , vol.26 , pp. 1481-1487
    • Kristensen, D.M.1    Kannan, L.2    Coleman, M.K.3    Wolf, Y.I.4    Sorokin, A.5    Koonin, E.V.6    Mushegian, A.7
  • 54
  • 55
    • 80051994193 scopus 로고    scopus 로고
    • The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing
    • Kuwahara, T., Ogura, Y., Oshima, K., Kurokawa, K., Ooka, T., Hirakawa, H., etal. (2011) The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing. DNA Res 18: 291-303.
    • (2011) DNA Res , vol.18 , pp. 291-303
    • Kuwahara, T.1    Ogura, Y.2    Oshima, K.3    Kurokawa, K.4    Ooka, T.5    Hirakawa, H.6
  • 56
    • 0037317737 scopus 로고    scopus 로고
    • Proteomic analysis of the spore coats of Bacillus subtilis and Bacillus anthracis
    • Lai, E.M., Phadke, N.D., Kachman, M.T., Giorno, R., Vazquez, S., Vazquez, J.A., etal. (2003) Proteomic analysis of the spore coats of Bacillus subtilis and Bacillus anthracis. J Bacteriol 185: 1443-1454.
    • (2003) J Bacteriol , vol.185 , pp. 1443-1454
    • Lai, E.M.1    Phadke, N.D.2    Kachman, M.T.3    Giorno, R.4    Vazquez, S.5    Vazquez, J.A.6
  • 57
    • 0030814693 scopus 로고    scopus 로고
    • Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacterium from a hot spring in Iceland
    • Larsen, L., Nielsen, P., and Ahring, B.K. (1997) Thermoanaerobacter mathranii sp. nov., an ethanol-producing, extremely thermophilic anaerobic bacterium from a hot spring in Iceland. Arch Microbiol 168: 114-119.
    • (1997) Arch Microbiol , vol.168 , pp. 114-119
    • Larsen, L.1    Nielsen, P.2    Ahring, B.K.3
  • 58
    • 68949097598 scopus 로고    scopus 로고
    • Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores
    • Lawley, T.D., Croucher, N.J., Yu, L., Clare, S., Sebaihia, M., Goulding, D., etal. (2009) Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores. J Bacteriol 191: 5377-5386.
    • (2009) J Bacteriol , vol.191 , pp. 5377-5386
    • Lawley, T.D.1    Croucher, N.J.2    Yu, L.3    Clare, S.4    Sebaihia, M.5    Goulding, D.6
  • 60
    • 0033745991 scopus 로고    scopus 로고
    • The trans-activation domain of the sporulation response regulator Spo0A revealed by X-ray crystallography
    • Lewis, R.J., Krzywda, S., Brannigan, J.A., Turkenburg, J.P., Muchova, K., Dodson, E.J., etal. (2000) The trans-activation domain of the sporulation response regulator Spo0A revealed by X-ray crystallography. Mol Microbiol 38: 198-212.
    • (2000) Mol Microbiol , vol.38 , pp. 198-212
    • Lewis, R.J.1    Krzywda, S.2    Brannigan, J.A.3    Turkenburg, J.P.4    Muchova, K.5    Dodson, E.J.6
  • 61
    • 0036290382 scopus 로고    scopus 로고
    • Dimer formation and transcription activation in the sporulation response regulator Spo0A
    • Lewis, R.J., Scott, D.J., Brannigan, J.A., Ladds, J.C., Cervin, M.A., Spiegelman, G.B., etal. (2002) Dimer formation and transcription activation in the sporulation response regulator Spo0A. J Mol Biol 316: 235-245.
    • (2002) J Mol Biol , vol.316 , pp. 235-245
    • Lewis, R.J.1    Scott, D.J.2    Brannigan, J.A.3    Ladds, J.C.4    Cervin, M.A.5    Spiegelman, G.B.6
  • 62
    • 44449095172 scopus 로고    scopus 로고
    • A novel small acid soluble protein variant is important for spore resistance of most Clostridium perfringens food poisoning isolates
    • Li, J., and McClane, B.A. (2008) A novel small acid soluble protein variant is important for spore resistance of most Clostridium perfringens food poisoning isolates. PLoS Pathog 4: e1000056.
    • (2008) PLoS Pathog , vol.4
    • Li, J.1    McClane, B.A.2
  • 64
    • 72949112015 scopus 로고    scopus 로고
    • Penicillin-binding protein SpoVD disulphide is a target for StoA in Bacillus subtilis forespores
    • Liu, Y., Carlsson Moller, M., Petersen, L., Soderberg, C.A., and Hederstedt, L. (2010) Penicillin-binding protein SpoVD disulphide is a target for StoA in Bacillus subtilis forespores. Mol Microbiol 75: 46-60.
    • (2010) Mol Microbiol , vol.75 , pp. 46-60
    • Liu, Y.1    Carlsson Moller, M.2    Petersen, L.3    Soderberg, C.A.4    Hederstedt, L.5
  • 65
    • 77951246352 scopus 로고    scopus 로고
    • Revised road map to the phylum Firmicutes
    • De Vos, P., Garrity, G., Jones, D., Krieg, N.R., Ludwig, W., Rainey, F.A., eds). New York, USA: Springer-Verlag -
    • Ludwig, W., Schleifer, K.-H., and Whitman, W.B. (2009) Revised road map to the phylum Firmicutes. In Bergey's Manual of Systematic Bacteriology, 2nd edn, Vol. 3 (The Firmicutes). De Vos, P., Garrity, G., Jones, D., Krieg, N.R., Ludwig, W., Rainey, F.A., etal. (eds). New York, USA: Springer-Verlag, pp. 1-8.
    • (2009) Bergey's Manual of Systematic Bacteriology, 2nd edn, Vol. 3 (The Firmicutes) , pp. 1-8
    • Ludwig, W.1    Schleifer, K.-H.2    Whitman, W.B.3
  • 66
    • 84855804122 scopus 로고    scopus 로고
    • Dynamics of spore coat morphogenesis in Bacillus subtilis
    • McKenney, P.T., and Eichenberger, P. (2011) Dynamics of spore coat morphogenesis in Bacillus subtilis. Mol Microbiol 83: 245-260.
    • (2011) Mol Microbiol , vol.83 , pp. 245-260
    • McKenney, P.T.1    Eichenberger, P.2
  • 67
    • 77953137717 scopus 로고    scopus 로고
    • A distance-weighted interaction map reveals a previously uncharacterized layer of the Bacillus subtilis spore coat
    • McKenney, P.T., Driks, A., Eskandarian, H.A., Grabowski, P., Guberman, J., Wang, K.H., etal. (2010) A distance-weighted interaction map reveals a previously uncharacterized layer of the Bacillus subtilis spore coat. Curr Biol 20: 934-938.
    • (2010) Curr Biol , vol.20 , pp. 934-938
    • McKenney, P.T.1    Driks, A.2    Eskandarian, H.A.3    Grabowski, P.4    Guberman, J.5    Wang, K.H.6
  • 68
    • 38949147846 scopus 로고    scopus 로고
    • Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
    • Makarova, K.S., Sorokin, A.V., Novichkov, P.S., Wolf, Y.I., and Koonin, E.V. (2007) Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea. Biol Direct 2: 33.
    • (2007) Biol Direct , vol.2 , pp. 33
    • Makarova, K.S.1    Sorokin, A.V.2    Novichkov, P.S.3    Wolf, Y.I.4    Koonin, E.V.5
  • 70
    • 77953297034 scopus 로고    scopus 로고
    • Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes
    • Marchandin, H., Teyssier, C., Campos, J., Jean-Pierre, H., Roger, F., Gay, B., etal. (2010) Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes. Int J Syst Evol Microbiol 60: 1271-1279.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1271-1279
    • Marchandin, H.1    Teyssier, C.2    Campos, J.3    Jean-Pierre, H.4    Roger, F.5    Gay, B.6
  • 71
    • 3242887157 scopus 로고    scopus 로고
    • CD-Search: protein domain annotations on the fly
    • Marchler-Bauer, A., and Bryant, S.H. (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32: W327-W331.
    • (2004) Nucleic Acids Res , vol.32
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 73
    • 46449102592 scopus 로고    scopus 로고
    • Relationship of specific vaginal bacteria and bacterial vaginosis treatment failure in women who have sex with women
    • Marrazzo, J.M., Thomas, K.K., Fiedler, T.L., Ringwood, K., and Fredricks, D.N. (2008) Relationship of specific vaginal bacteria and bacterial vaginosis treatment failure in women who have sex with women. Ann Intern Med 149: 20-28.
    • (2008) Ann Intern Med , vol.149 , pp. 20-28
    • Marrazzo, J.M.1    Thomas, K.K.2    Fiedler, T.L.3    Ringwood, K.4    Fredricks, D.N.5
  • 74
    • 78751476601 scopus 로고    scopus 로고
    • A LytM domain dictates the localization of proteins to the mother cell-forespore interface during bacterial endospore formation
    • Meisner, J., and Moran, C.P., Jr (2011) A LytM domain dictates the localization of proteins to the mother cell-forespore interface during bacterial endospore formation. J Bacteriol 193: 591-598.
    • (2011) J Bacteriol , vol.193 , pp. 591-598
    • Meisner, J.1    Moran Jr, C.P.2
  • 76
    • 0036053046 scopus 로고    scopus 로고
    • Peptidyl-tRNA hydrolase in Bacillus subtilis, encoded by spoVC, is essential to vegetative growth, whereas the homologous enzyme in Saccharomyces cerevisiae is dispensable
    • Menez, J., Buckingham, R.H., de Zamaroczy, M., and Karmazyn-Campelli, C. (2002) Peptidyl-tRNA hydrolase in Bacillus subtilis, encoded by spoVC, is essential to vegetative growth, whereas the homologous enzyme in Saccharomyces cerevisiae is dispensable. Mol Microbiol 45: 123-129.
    • (2002) Mol Microbiol , vol.45 , pp. 123-129
    • Menez, J.1    Buckingham, R.H.2    de Zamaroczy, M.3    Karmazyn-Campelli, C.4
  • 77
    • 36549017617 scopus 로고    scopus 로고
    • Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov.
    • Mesbah, N.M., Hedrick, D.B., Peacock, A.D., Rohde, M., and Wiegel, J. (2007) Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov. Int J Syst Evol Microbiol 57: 2507-2512.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2507-2512
    • Mesbah, N.M.1    Hedrick, D.B.2    Peacock, A.D.3    Rohde, M.4    Wiegel, J.5
  • 78
    • 48549102338 scopus 로고    scopus 로고
    • Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs
    • Miroshnichenko, M.L., Kublanov, I.V., Kostrikina, N.A., Tourova, T.P., Kolganova, T.V., Birkeland, N.K., and Bonch-Osmolovskaya, E.A. (2008a) Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs. Int J Syst Evol Microbiol 58: 1492-1496.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1492-1496
    • Miroshnichenko, M.L.1    Kublanov, I.V.2    Kostrikina, N.A.3    Tourova, T.P.4    Kolganova, T.V.5    Birkeland, N.K.6    Bonch-Osmolovskaya, E.A.7
  • 81
    • 0001375592 scopus 로고
    • Sporomusa, a new genus of gram-negative anaerobic bacteria including Sporomusa sphaeroides spec. nov. and Sporomusa ovata spec. nov.
    • Möller, B., Ossmer, R., Howard, B.H., Gottschalk, G., and Hippe, H. (1984) Sporomusa, a new genus of gram-negative anaerobic bacteria including Sporomusa sphaeroides spec. nov. and Sporomusa ovata spec. nov. Arch Microbiol 139: 388-396.
    • (1984) Arch Microbiol , vol.139 , pp. 388-396
    • Möller, B.1    Ossmer, R.2    Howard, B.H.3    Gottschalk, G.4    Hippe, H.5
  • 82
    • 0018964092 scopus 로고
    • Identification of a sporulation locus in cloned Bacillus subtilis deoxyribonucleic acid
    • Moran, C.P., Jr, Losick, R., and Sonenshein, A.L. (1980) Identification of a sporulation locus in cloned Bacillus subtilis deoxyribonucleic acid. J Bacteriol 142: 331-334.
    • (1980) J Bacteriol , vol.142 , pp. 331-334
    • Moran Jr, C.P.1    Losick, R.2    Sonenshein, A.L.3
  • 83
    • 14644444463 scopus 로고    scopus 로고
    • Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential 'house-cleaning' functions
    • Moroz, O.V., Murzin, A.G., Makarova, K.S., Koonin, E.V., Wilson, K.S., and Galperin, M.Y. (2005) Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential 'house-cleaning' functions. J Mol Biol 347: 243-255.
    • (2005) J Mol Biol , vol.347 , pp. 243-255
    • Moroz, O.V.1    Murzin, A.G.2    Makarova, K.S.3    Koonin, E.V.4    Wilson, K.S.5    Galperin, M.Y.6
  • 85
    • 0029764929 scopus 로고    scopus 로고
    • Bacillus subtilis spore coat assembly requires cotH gene expression
    • Naclerio, G., Baccigalupi, L., Zilhao, R., De Felice, M., and Ricca, E. (1996) Bacillus subtilis spore coat assembly requires cotH gene expression. J Bacteriol 178: 4375-4380.
    • (1996) J Bacteriol , vol.178 , pp. 4375-4380
    • Naclerio, G.1    Baccigalupi, L.2    Zilhao, R.3    De Felice, M.4    Ricca, E.5
  • 86
    • 0034530835 scopus 로고    scopus 로고
    • Using the COG database to improve gene recognition in complete genomes
    • Natale, D.A., Galperin, M.Y., Tatusov, R.L., and Koonin, E.V. (2000) Using the COG database to improve gene recognition in complete genomes. Genetica 108: 9-17.
    • (2000) Genetica , vol.108 , pp. 9-17
    • Natale, D.A.1    Galperin, M.Y.2    Tatusov, R.L.3    Koonin, E.V.4
  • 87
    • 80055082805 scopus 로고    scopus 로고
    • Whole-genome comparison clarifies close phylogenetic relationships between the phyla Dictyoglomi and Thermotogae
    • Nishida, H., Beppu, T., and Ueda, K. (2011) Whole-genome comparison clarifies close phylogenetic relationships between the phyla Dictyoglomi and Thermotogae. Genomics 98: 370-375.
    • (2011) Genomics , vol.98 , pp. 370-375
    • Nishida, H.1    Beppu, T.2    Ueda, K.3
  • 88
    • 33644854231 scopus 로고    scopus 로고
    • Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195
    • Nonaka, H., Keresztes, G., Shinoda, Y., Ikenaga, Y., Abe, M., Naito, K., etal. (2006) Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195. J Bacteriol 188: 2262-2274.
    • (2006) J Bacteriol , vol.188 , pp. 2262-2274
    • Nonaka, H.1    Keresztes, G.2    Shinoda, Y.3    Ikenaga, Y.4    Abe, M.5    Naito, K.6
  • 89
    • 5444263706 scopus 로고    scopus 로고
    • Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch (Firmicutes)
    • Onyenwoke, R.U., Brill, J.A., Farahi, K., and Wiegel, J. (2004) Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch (Firmicutes). Arch Microbiol 182: 182-192.
    • (2004) Arch Microbiol , vol.182 , pp. 182-192
    • Onyenwoke, R.U.1    Brill, J.A.2    Farahi, K.3    Wiegel, J.4
  • 90
    • 72949107614 scopus 로고    scopus 로고
    • EtfA catalyses the formation of dipicolinic acid in Clostridium perfringens
    • Orsburn, B.C., Melville, S.B., and Popham, D.L. (2010) EtfA catalyses the formation of dipicolinic acid in Clostridium perfringens. Mol Microbiol 75: 178-186.
    • (2010) Mol Microbiol , vol.75 , pp. 178-186
    • Orsburn, B.C.1    Melville, S.B.2    Popham, D.L.3
  • 91
    • 30544443489 scopus 로고    scopus 로고
    • A comparative genomic view of clostridial sporulation and physiology
    • Paredes, C.J., Alsaker, K.V., and Papoutsakis, E.T. (2005) A comparative genomic view of clostridial sporulation and physiology. Nat Rev Microbiol 3: 969-978.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 969-978
    • Paredes, C.J.1    Alsaker, K.V.2    Papoutsakis, E.T.3
  • 92
    • 67649279877 scopus 로고    scopus 로고
    • Biology and genomic analysis of Clostridium botulinum
    • Peck, M.W. (2009) Biology and genomic analysis of Clostridium botulinum. Adv Microb Physiol 55: 183-265.
    • (2009) Adv Microb Physiol , vol.55 , pp. 183-265
    • Peck, M.W.1
  • 93
    • 0035724959 scopus 로고    scopus 로고
    • A new family of aspartyl phosphate phosphatases targeting the sporulation transcription factor Spo0A of Bacillus subtilis
    • Perego, M. (2001) A new family of aspartyl phosphate phosphatases targeting the sporulation transcription factor Spo0A of Bacillus subtilis. Mol Microbiol 42: 133-143.
    • (2001) Mol Microbiol , vol.42 , pp. 133-143
    • Perego, M.1
  • 94
    • 51649124894 scopus 로고    scopus 로고
    • The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
    • Pierce, E., Xie, G., Barabote, R.D., Saunders, E., Han, C.S., Detter, J.C., etal. (2008) The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). Environ Microbiol 10: 2550-2573.
    • (2008) Environ Microbiol , vol.10 , pp. 2550-2573
    • Pierce, E.1    Xie, G.2    Barabote, R.D.3    Saunders, E.4    Han, C.S.5    Detter, J.C.6
  • 95
  • 96
    • 0002305548 scopus 로고    scopus 로고
    • Sporulation genes and intercompartmental regulation
    • Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC, USA: ASM Press -
    • Piggot, P.J., and Losick, R. (2002) Sporulation genes and intercompartmental regulation. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC, USA: ASM Press, pp. 483-518.
    • (2002) Bacillus subtilis and Its Closest Relatives: From Genes to Cells , pp. 483-518
    • Piggot, P.J.1    Losick, R.2
  • 97
    • 0036203186 scopus 로고    scopus 로고
    • Specialized peptidoglycan of the bacterial endospore: the inner wall of the lockbox
    • Popham, D.L. (2002) Specialized peptidoglycan of the bacterial endospore: the inner wall of the lockbox. Cell Mol Life Sci 59: 426-433.
    • (2002) Cell Mol Life Sci , vol.59 , pp. 426-433
    • Popham, D.L.1
  • 98
    • 80053045987 scopus 로고    scopus 로고
    • Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation
    • Prakash, T., Oshima, K., Morita, H., Fukuda, S., Imaoka, A., Kumar, N., etal. (2011) Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation. Cell Host Microbe 10: 273-284.
    • (2011) Cell Host Microbe , vol.10 , pp. 273-284
    • Prakash, T.1    Oshima, K.2    Morita, H.3    Fukuda, S.4    Imaoka, A.5    Kumar, N.6
  • 99
    • 84859436530 scopus 로고    scopus 로고
    • NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
    • Pruitt, K.D., Tatusova, T., Brown, G.R., and Maglott, D.R. (2012) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res 40: D130-D135.
    • (2012) Nucleic Acids Res , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 100
    • 53149111160 scopus 로고    scopus 로고
    • CAIcal: a combined set of tools to assess codon usage adaptation
    • Puigbo, P., Bravo, I.G., and Garcia-Vallve, S. (2008a) CAIcal: a combined set of tools to assess codon usage adaptation. Biol Direct 3: 38.
    • (2008) Biol Direct , vol.3 , pp. 38
    • Puigbo, P.1    Bravo, I.G.2    Garcia-Vallve, S.3
  • 101
    • 38549144165 scopus 로고    scopus 로고
    • HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection
    • Puigbo, P., Romeu, A., and Garcia-Vallve, S. (2008b) HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection. Nucleic Acids Res 36: D524-D527.
    • (2008) Nucleic Acids Res , vol.36
    • Puigbo, P.1    Romeu, A.2    Garcia-Vallve, S.3
  • 103
    • 4344718438 scopus 로고    scopus 로고
    • Transglutaminase-mediated cross-linking of GerQ in the coats of Bacillus subtilis spores
    • Ragkousi, K., and Setlow, P. (2004) Transglutaminase-mediated cross-linking of GerQ in the coats of Bacillus subtilis spores. J Bacteriol 186: 5567-5575.
    • (2004) J Bacteriol , vol.186 , pp. 5567-5575
    • Ragkousi, K.1    Setlow, P.2
  • 104
    • 0028309669 scopus 로고
    • Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: an obligately anaerobic, extremely thermophilic, cellulolytic bacterium
    • Rainey, F.A., Donnison, A.M., Janssen, P.H., Saul, D., Rodrigo, A., Bergquist, P.L., etal. (1994) Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: an obligately anaerobic, extremely thermophilic, cellulolytic bacterium. FEMS Microbiol Lett 120: 263-266.
    • (1994) FEMS Microbiol Lett , vol.120 , pp. 263-266
    • Rainey, F.A.1    Donnison, A.M.2    Janssen, P.H.3    Saul, D.4    Rodrigo, A.5    Bergquist, P.L.6
  • 105
  • 106
    • 1242318694 scopus 로고    scopus 로고
    • Identification of proteins in the exosporium of Bacillus anthracis
    • Redmond, C., Baillie, L.W., Hibbs, S., Moir, A.J., and Moir, A. (2004) Identification of proteins in the exosporium of Bacillus anthracis. Microbiology 150: 355-363.
    • (2004) Microbiology , vol.150 , pp. 355-363
    • Redmond, C.1    Baillie, L.W.2    Hibbs, S.3    Moir, A.J.4    Moir, A.5
  • 107
    • 49549088390 scopus 로고    scopus 로고
    • Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution
    • Rigden, D.J., and Galperin, M.Y. (2008) Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution. Bioinformatics 24: 1793-1797.
    • (2008) Bioinformatics , vol.24 , pp. 1793-1797
    • Rigden, D.J.1    Galperin, M.Y.2
  • 109
    • 57449094163 scopus 로고    scopus 로고
    • Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1
    • Saw, J.H., Mountain, B.W., Feng, L., Omelchenko, M.V., Hou, S., Saito, J.A., etal. (2008) Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1. Genome Biol 9: R161.
    • (2008) Genome Biol , vol.9
    • Saw, J.H.1    Mountain, B.W.2    Feng, L.3    Omelchenko, M.V.4    Hou, S.5    Saito, J.A.6
  • 111
    • 80053025965 scopus 로고    scopus 로고
    • The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment
    • Sczesnak, A., Segata, N., Qin, X., Gevers, D., Petrosino, J.F., Huttenhower, C., etal. (2011) The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host Microbe 10: 260-272.
    • (2011) Cell Host Microbe , vol.10 , pp. 260-272
    • Sczesnak, A.1    Segata, N.2    Qin, X.3    Gevers, D.4    Petrosino, J.F.5    Huttenhower, C.6
  • 112
    • 33846113652 scopus 로고    scopus 로고
    • TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
    • Selengut, J.D., Haft, D.H., Davidsen, T., Ganapathy, A., Gwinn-Giglio, M., Nelson, W.C., etal. (2007) TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res 35: D260-D264.
    • (2007) Nucleic Acids Res , vol.35
    • Selengut, J.D.1    Haft, D.H.2    Davidsen, T.3    Ganapathy, A.4    Gwinn-Giglio, M.5    Nelson, W.C.6
  • 113
    • 0016724565 scopus 로고
    • Purification and properties of some unique low molecular weight basic proteins degraded during germination of Bacillus megaterium spores
    • Setlow, P. (1975) Purification and properties of some unique low molecular weight basic proteins degraded during germination of Bacillus megaterium spores. J Biol Chem 250: 8168-8173.
    • (1975) J Biol Chem , vol.250 , pp. 8168-8173
    • Setlow, P.1
  • 114
    • 0024152866 scopus 로고
    • Small, acid-soluble spore proteins of Bacillus species: structure, synthesis, genetics, function, and degradation
    • Setlow, P. (1988) Small, acid-soluble spore proteins of Bacillus species: structure, synthesis, genetics, function, and degradation. Annu Rev Microbiol 42: 319-338.
    • (1988) Annu Rev Microbiol , vol.42 , pp. 319-338
    • Setlow, P.1
  • 115
    • 34047126471 scopus 로고    scopus 로고
    • I will survive: DNA protection in bacterial spores
    • Setlow, P. (2007) I will survive: DNA protection in bacterial spores. Trends Microbiol 15: 172-180.
    • (2007) Trends Microbiol , vol.15 , pp. 172-180
    • Setlow, P.1
  • 116
    • 0017376749 scopus 로고
    • Levels of small molecules and enzymes in the mother cell compartment and the forespore of sporulating Bacillus megaterium
    • Singh, R.P., Setlow, B., and Setlow, P. (1977) Levels of small molecules and enzymes in the mother cell compartment and the forespore of sporulating Bacillus megaterium. J Bacteriol 130: 1130-1138.
    • (1977) J Bacteriol , vol.130 , pp. 1130-1138
    • Singh, R.P.1    Setlow, B.2    Setlow, P.3
  • 117
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • Söding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics 21: 951-960.
    • (2005) Bioinformatics , vol.21 , pp. 951-960
    • Söding, J.1
  • 118
    • 26244453970 scopus 로고    scopus 로고
    • Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area
    • Sokolova, T.G., Kostrikina, N.A., Chernyh, N.A., Kolganova, T.V., Tourova, T.P., and Bonch-Osmolovskaya, E.A. (2005) Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area. Int J Syst Evol Microbiol 55: 2069-2073.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2069-2073
    • Sokolova, T.G.1    Kostrikina, N.A.2    Chernyh, N.A.3    Kolganova, T.V.4    Tourova, T.P.5    Bonch-Osmolovskaya, E.A.6
  • 119
    • 0014409783 scopus 로고
    • Biochemical studies of bacterial sporulation and germination. VI. Origin of spore core and coat proteins
    • Spudich, J.A., and Kornberg, A. (1968) Biochemical studies of bacterial sporulation and germination. VI. Origin of spore core and coat proteins. J Biol Chem 243: 4588-4599.
    • (1968) J Biol Chem , vol.243 , pp. 4588-4599
    • Spudich, J.A.1    Kornberg, A.2
  • 120
    • 24344462652 scopus 로고    scopus 로고
    • Characterization of the exosporium basal layer protein BxpB of Bacillus anthracis
    • Steichen, C.T., Kearney, J.F., and Turnbough, C.L., Jr (2005) Characterization of the exosporium basal layer protein BxpB of Bacillus anthracis. J Bacteriol 187: 5868-5876.
    • (2005) J Bacteriol , vol.187 , pp. 5868-5876
    • Steichen, C.T.1    Kearney, J.F.2    Turnbough Jr, C.L.3
  • 121
    • 14044268828 scopus 로고    scopus 로고
    • Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis
    • Steil, L., Serrano, M., Henriques, A.O., and Völker, U. (2005) Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis. Microbiology 151: 399-420.
    • (2005) Microbiology , vol.151 , pp. 399-420
    • Steil, L.1    Serrano, M.2    Henriques, A.O.3    Völker, U.4
  • 122
    • 79955011057 scopus 로고    scopus 로고
    • Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum
    • Steiner, E., Dago, A.E., Young, D.I., Heap, J.T., Minton, N.P., Hoch, J.A., and Young, M. (2011) Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum. Mol Microbiol 80: 641-654.
    • (2011) Mol Microbiol , vol.80 , pp. 641-654
    • Steiner, E.1    Dago, A.E.2    Young, D.I.3    Heap, J.T.4    Minton, N.P.5    Hoch, J.A.6    Young, M.7
  • 123
    • 0002572455 scopus 로고    scopus 로고
    • A gene odyssey: exploring the genomes of endospore-forming bacteria
    • Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC, USA: ASM Press -
    • Stragier, P. (2002) A gene odyssey: exploring the genomes of endospore-forming bacteria. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells. Sonenshein, A.L., Hoch, J.A., and Losick, R. (eds). Washington, DC, USA: ASM Press, pp. 519-526.
    • (2002) Bacillus subtilis and Its Closest Relatives: From Genes to Cells , pp. 519-526
    • Stragier, P.1
  • 124
    • 0030457111 scopus 로고    scopus 로고
    • Molecular genetics of sporulation in Bacillus subtilis
    • Stragier, P., and Losick, R. (1996) Molecular genetics of sporulation in Bacillus subtilis. Annu Rev Genet 30: 297-341.
    • (1996) Annu Rev Genet , vol.30 , pp. 297-341
    • Stragier, P.1    Losick, R.2
  • 125
    • 0034059604 scopus 로고    scopus 로고
    • A dispensable role for forespore-specific gene expression in engulfment of the forespore during sporulation of Bacillus subtilis
    • Sun, Y.L., Sharp, M.D., and Pogliano, K. (2000) A dispensable role for forespore-specific gene expression in engulfment of the forespore during sporulation of Bacillus subtilis. J Bacteriol 182: 2919-2927.
    • (2000) J Bacteriol , vol.182 , pp. 2919-2927
    • Sun, Y.L.1    Sharp, M.D.2    Pogliano, K.3
  • 126
    • 0006301126 scopus 로고    scopus 로고
    • Bacillus arsenicoselenatis, sp. nov., and Bacillus selenitireducens, sp. nov.: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic
    • Switzer Blum, J., Burns Bindi, A., Buzzelli, J., Stolz, J.F., and Oremland, R.S. (1998) Bacillus arsenicoselenatis, sp. nov., and Bacillus selenitireducens, sp. nov.: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic. Arch Microbiol 171: 19-30.
    • (1998) Arch Microbiol , vol.171 , pp. 19-30
    • Switzer Blum, J.1    Burns Bindi, A.2    Buzzelli, J.3    Stolz, J.F.4    Oremland, R.S.5
  • 127
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L., Koonin, E.V., and Lipman, D.J. (1997) A genomic perspective on protein families. Science 278: 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 128
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov, R.L., Galperin, M.Y., Natale, D.A., and Koonin, E.V. (2000) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 28: 33-36.
    • (2000) Nucleic Acids Res , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 130
    • 78651319979 scopus 로고    scopus 로고
    • Ongoing and future developments at the Universal Protein Resource
    • The UniProt Consortium.
    • The UniProt Consortium (2011) Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res 39: D214-D219.
    • (2011) Nucleic Acids Res , vol.39
  • 131
    • 80052294350 scopus 로고    scopus 로고
    • Peptidoglycan remodeling and conversion of an inner membrane into an outer membrane during sporulation
    • Tocheva, E.I., Matson, E.G., Morris, D.M., Moussavi, F., Leadbetter, J.R., and Jensen, G.J. (2011) Peptidoglycan remodeling and conversion of an inner membrane into an outer membrane during sporulation. Cell 146: 799-812.
    • (2011) Cell , vol.146 , pp. 799-812
    • Tocheva, E.I.1    Matson, E.G.2    Morris, D.M.3    Moussavi, F.4    Leadbetter, J.R.5    Jensen, G.J.6
  • 133
    • 0032564389 scopus 로고    scopus 로고
    • Characterization of interactions between a two-component response regulator, Spo0F, and its phosphatase, RapB
    • Tzeng, Y.L., Feher, V.A., Cavanagh, J., Perego, M., and Hoch, J.A. (1998) Characterization of interactions between a two-component response regulator, Spo0F, and its phosphatase, RapB. Biochemistry 37: 16538-16545.
    • (1998) Biochemistry , vol.37 , pp. 16538-16545
    • Tzeng, Y.L.1    Feher, V.A.2    Cavanagh, J.3    Perego, M.4    Hoch, J.A.5
  • 134
    • 71749105366 scopus 로고    scopus 로고
    • Characterization of the sporulation initiation pathway of Clostridium difficile and its role in toxin production
    • Underwood, S., Guan, S., Vijayasubhash, V., Baines, S.D., Graham, L., Lewis, R.J., etal. (2009) Characterization of the sporulation initiation pathway of Clostridium difficile and its role in toxin production. J Bacteriol 191: 7296-7305.
    • (2009) J Bacteriol , vol.191 , pp. 7296-7305
    • Underwood, S.1    Guan, S.2    Vijayasubhash, V.3    Baines, S.D.4    Graham, L.5    Lewis, R.J.6
  • 135
    • 69249235738 scopus 로고    scopus 로고
    • A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis
    • Veening, J.W., Murray, H., and Errington, J. (2009) A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis. Genes Dev 23: 1959-1970.
    • (2009) Genes Dev , vol.23 , pp. 1959-1970
    • Veening, J.W.1    Murray, H.2    Errington, J.3
  • 136
    • 79955382952 scopus 로고    scopus 로고
    • Extremely variable conservation of gamma-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales
    • Vyas, J., Cox, J., Setlow, B., Coleman, W.H., and Setlow, P. (2011) Extremely variable conservation of gamma-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales. J Bacteriol 193: 1884-1892.
    • (2011) J Bacteriol , vol.193 , pp. 1884-1892
    • Vyas, J.1    Cox, J.2    Setlow, B.3    Coleman, W.H.4    Setlow, P.5
  • 138
    • 33645084001 scopus 로고    scopus 로고
    • Phosphorylation and functional analysis of the sporulation initiation factor Spo0A from Clostridium botulinum
    • Worner, K., Szurmant, H., Chiang, C., and Hoch, J.A. (2006) Phosphorylation and functional analysis of the sporulation initiation factor Spo0A from Clostridium botulinum. Mol Microbiol 59: 1000-1012.
    • (2006) Mol Microbiol , vol.59 , pp. 1000-1012
    • Worner, K.1    Szurmant, H.2    Chiang, C.3    Hoch, J.A.4
  • 139
    • 55549118558 scopus 로고    scopus 로고
    • A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells
    • Wrighton, K.C., Agbo, P., Warnecke, F., Weber, K.A., Brodie, E.L., DeSantis, T.Z., etal. (2008) A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J 2: 1146-1156.
    • (2008) ISME J , vol.2 , pp. 1146-1156
    • Wrighton, K.C.1    Agbo, P.2    Warnecke, F.3    Weber, K.A.4    Brodie, E.L.5    DeSantis, T.Z.6
  • 140
    • 34548216842 scopus 로고    scopus 로고
    • Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
    • Wu, M., Ren, Q., Durkin, A.S., Daugherty, S.C., Brinkac, L.M., Dodson, R.J., etal. (2005) Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. PLoS Genet 1: e65.
    • (2005) PLoS Genet , vol.1
    • Wu, M.1    Ren, Q.2    Durkin, A.S.3    Daugherty, S.C.4    Brinkac, L.M.5    Dodson, R.J.6
  • 141
    • 79651471015 scopus 로고    scopus 로고
    • Clostridial spore germination versus bacilli: genome mining and current insights
    • Xiao, Y., Francke, C., Abee, T., and Wells-Bennik, M.H. (2011) Clostridial spore germination versus bacilli: genome mining and current insights. Food Microbiol 28: 266-274.
    • (2011) Food Microbiol , vol.28 , pp. 266-274
    • Xiao, Y.1    Francke, C.2    Abee, T.3    Wells-Bennik, M.H.4
  • 142
    • 84861219308 scopus 로고    scopus 로고
    • Phylogenomics of prokaryotic ribosomal proteins
    • Yutin, N., Puigbo, P., Koonin, E.V., and Wolf, Y.I. (2012) Phylogenomics of prokaryotic ribosomal proteins. PLoS ONE 7: e36972.
    • (2012) PLoS ONE , vol.7
    • Yutin, N.1    Puigbo, P.2    Koonin, E.V.3    Wolf, Y.I.4
  • 143
    • 33846158515 scopus 로고    scopus 로고
    • Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction
    • Zavarzina, D.G., Sokolova, T.G., Tourova, T.P., Chernyh, N.A., Kostrikina, N.A., and Bonch-Osmolovskaya, E.A. (2007) Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction. Extremophiles 11: 1-7.
    • (2007) Extremophiles , vol.11 , pp. 1-7
    • Zavarzina, D.G.1    Sokolova, T.G.2    Tourova, T.P.3    Chernyh, N.A.4    Kostrikina, N.A.5    Bonch-Osmolovskaya, E.A.6
  • 144
    • 79960397181 scopus 로고    scopus 로고
    • Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF
    • Zhao, B., Mesbah, N.M., Dalin, E., Goodwin, L., Nolan, M., Pitluck, S., etal. (2011) Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF. J Bacteriol 193: 4023-4024.
    • (2011) J Bacteriol , vol.193 , pp. 4023-4024
    • Zhao, B.1    Mesbah, N.M.2    Dalin, E.3    Goodwin, L.4    Nolan, M.5    Pitluck, S.6
  • 145
    • 1142310715 scopus 로고    scopus 로고
    • Interactions among CotB, CotG, and CotH during assembly of the Bacillus subtilis spore coat
    • Zilhão, R., Serrano, M., Isticato, R., Ricca, E., Moran, C.P., Jr, and Henriques, A.O. (2004) Interactions among CotB, CotG, and CotH during assembly of the Bacillus subtilis spore coat. J Bacteriol 186: 1110-1119.
    • (2004) J Bacteriol , vol.186 , pp. 1110-1119
    • Zilhão, R.1    Serrano, M.2    Isticato, R.3    Ricca, E.4    Moran Jr, C.P.5    Henriques, A.O.6
  • 146
    • 27744587880 scopus 로고    scopus 로고
    • Assembly and function of a spore coat-associated transglutaminase of Bacillus subtilis
    • Zilhão, R., Isticato, R., Martins, L.O., Steil, L., Völker, U., Ricca, E., etal. (2005) Assembly and function of a spore coat-associated transglutaminase of Bacillus subtilis. J Bacteriol 187: 7753-7764.
    • (2005) J Bacteriol , vol.187 , pp. 7753-7764
    • Zilhão, R.1    Isticato, R.2    Martins, L.O.3    Steil, L.4    Völker, U.5    Ricca, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.