메뉴 건너뛰기




Volumn 17, Issue 3, 2006, Pages 241-249

The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; ECOLOGY; GENES; MICROBIOLOGY; MICROORGANISMS; PHYSIOLOGY; POLYVINYL CHLORIDES; WASTEWATER TREATMENT;

EID: 33744927902     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.copbio.2006.05.005     Document Type: Review
Times cited : (384)

References (102)
  • 3
    • 0034526970 scopus 로고    scopus 로고
    • Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny
    • Ward N.L., Rainey F.A., Hedlund B.P., Staley J.T., Ludwig W., and Stackebrandt E. Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int J Syst Evol Microbiol 50 (2000) 1965-1972
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1965-1972
    • Ward, N.L.1    Rainey, F.A.2    Hedlund, B.P.3    Staley, J.T.4    Ludwig, W.5    Stackebrandt, E.6
  • 4
    • 0035346296 scopus 로고    scopus 로고
    • Phylogenetic analysis of evolutionary relationships of the planctomycete division of the domain bacteria based on amino acid sequences of elongation factor Tu
    • Jenkins C., and Fuerst J.A. Phylogenetic analysis of evolutionary relationships of the planctomycete division of the domain bacteria based on amino acid sequences of elongation factor Tu. J Mol Evol 52 (2001) 405-418
    • (2001) J Mol Evol , vol.52 , pp. 405-418
    • Jenkins, C.1    Fuerst, J.A.2
  • 5
    • 0031927992 scopus 로고    scopus 로고
    • Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
    • Vergin K.L., Urbach E., Stein J.L., DeLong E.F., Lanoil B.D., and Giovannoni S.J. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl Environ Microbiol 64 (1998) 3075-3078
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3075-3078
    • Vergin, K.L.1    Urbach, E.2    Stein, J.L.3    DeLong, E.F.4    Lanoil, B.D.5    Giovannoni, S.J.6
  • 6
    • 33644942303 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog
    • Dedysh S.N., Pankratov T.A., Belova S.E., Kulichevskaya I.S., and Liesack W. Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog. Appl Environ Microbiol 72 (2006) 2110-2117
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2110-2117
    • Dedysh, S.N.1    Pankratov, T.A.2    Belova, S.E.3    Kulichevskaya, I.S.4    Liesack, W.5
  • 7
    • 11144298161 scopus 로고    scopus 로고
    • Diversity and abundance of Bacteria and Archaea in the Bor Khlueng hot spring in Thailand
    • Kanokratana P., Chanapan S., Pootanakit K., and Eurwilaichitr L. Diversity and abundance of Bacteria and Archaea in the Bor Khlueng hot spring in Thailand. J Basic Microbiol 44 (2004) 430-444
    • (2004) J Basic Microbiol , vol.44 , pp. 430-444
    • Kanokratana, P.1    Chanapan, S.2    Pootanakit, K.3    Eurwilaichitr, L.4
  • 8
    • 2942664887 scopus 로고    scopus 로고
    • Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov. and emended description of the genus Pirellula
    • Schlesner H., Rensmann C., Tindall B.J., Gade D., Rabus R., Pfeiffer S., and Hirsch P. Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov. and emended description of the genus Pirellula. Int J Syst Evol Microbiol 54 (2004) 1567-1580
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1567-1580
    • Schlesner, H.1    Rensmann, C.2    Tindall, B.J.3    Gade, D.4    Rabus, R.5    Pfeiffer, S.6    Hirsch, P.7
  • 10
    • 22444445245 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of the bacterial community in the gut of the termite Coptotermes formosanus
    • Shinzato N., Muramatsu M., Matsui T., and Watanabe Y. Molecular phylogenetic diversity of the bacterial community in the gut of the termite Coptotermes formosanus. Biosci Biotechnol Biochem 69 (2005) 1145-1155
    • (2005) Biosci Biotechnol Biochem , vol.69 , pp. 1145-1155
    • Shinzato, N.1    Muramatsu, M.2    Matsui, T.3    Watanabe, Y.4
  • 12
    • 0037478650 scopus 로고    scopus 로고
    • Complete genome sequence of the marine planctomycete Pirellula sp. strain 1
    • This paper reports the first genome sequence of a planctomycete, Pirellula sp. strain 1, which is today classified as Rhodopirellula baltica. The R. baltica genome, among the largest bacterial genomes known to date, encodes more than 100 sulfatases used for the degradation of sulfated glycopolymers produced by algae.
    • Glöckner F.O., Kube M., Bauer M., Teeling H., Lombardot T., Ludwig W., Gade D., Beck A., Borzym K., Heitmann K., et al. Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc Natl Acad Sci USA 100 (2003) 8298-8303. This paper reports the first genome sequence of a planctomycete, Pirellula sp. strain 1, which is today classified as Rhodopirellula baltica. The R. baltica genome, among the largest bacterial genomes known to date, encodes more than 100 sulfatases used for the degradation of sulfated glycopolymers produced by algae.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8298-8303
    • Glöckner, F.O.1    Kube, M.2    Bauer, M.3    Teeling, H.4    Lombardot, T.5    Ludwig, W.6    Gade, D.7    Beck, A.8    Borzym, K.9    Heitmann, K.10
  • 13
    • 11144317316 scopus 로고    scopus 로고
    • The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons
    • Lombardot T., Bauer M., Teeling H., Amann R., and Glockner F.O. The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons. FEMS Microbiol Lett 242 (2005) 137-145
    • (2005) FEMS Microbiol Lett , vol.242 , pp. 137-145
    • Lombardot, T.1    Bauer, M.2    Teeling, H.3    Amann, R.4    Glockner, F.O.5
  • 14
    • 26844512979 scopus 로고    scopus 로고
    • Highly enantioselective sec-alkyl sulfatase activity of the marine planctomycete Rhodopirellula baltica shows retention of configuration
    • Wallner S.R., Bauer M., Wurdemann C., Wecker P., Glockner F.O., and Faber K. Highly enantioselective sec-alkyl sulfatase activity of the marine planctomycete Rhodopirellula baltica shows retention of configuration. Angew Chem Int Ed Engl 44 (2005) 6381-6384
    • (2005) Angew Chem Int Ed Engl , vol.44 , pp. 6381-6384
    • Wallner, S.R.1    Bauer, M.2    Wurdemann, C.3    Wecker, P.4    Glockner, F.O.5    Faber, K.6
  • 17
    • 22744459517 scopus 로고    scopus 로고
    • Proteomic analysis of carbohydrate catabolism and regulation in the marine bacterium Rhodopirellula baltica
    • Gade D., Gobom J., and Rabus R. Proteomic analysis of carbohydrate catabolism and regulation in the marine bacterium Rhodopirellula baltica. Proteomics 5 (2005) 3672-3683
    • (2005) Proteomics , vol.5 , pp. 3672-3683
    • Gade, D.1    Gobom, J.2    Rabus, R.3
  • 18
    • 22744436104 scopus 로고    scopus 로고
    • Growth phase dependent regulation of protein composition in Rhodopirellula baltica
    • Gade D., Stuhrmann T., Reinhardt R., and Rabus R. Growth phase dependent regulation of protein composition in Rhodopirellula baltica. Environ Microbiol 7 (2005) 1074-1084
    • (2005) Environ Microbiol , vol.7 , pp. 1074-1084
    • Gade, D.1    Stuhrmann, T.2    Reinhardt, R.3    Rabus, R.4
  • 27
    • 0037126314 scopus 로고    scopus 로고
    • Linearly concatenated cyclobutane lipids form a dense bacterial membrane
    • An excellent paper which shows that so-called ladderanes (linearly fused cyclobutane rings) represent the dominant membrane lipids in the anammoxosome of anammox bacteria. This finding is particularly important because anammox bacteria use these ladderanes to build a very dense anammoxosome membrane and thus protect themselves from toxic intermediates like hydrazine. Furthermore, it is noteworthy that ladderanes, which are promising compounds for optoelectronics, have never been observed before in nature.
    • Sinninghe Damste J.S., Strous M., Rijpstra W.I., Hopmans E.C., Geenevasen J.A., van Duin A.C., van Niftrik L.A., and Jetten M.S. Linearly concatenated cyclobutane lipids form a dense bacterial membrane. Nature 419 (2002) 708-712. An excellent paper which shows that so-called ladderanes (linearly fused cyclobutane rings) represent the dominant membrane lipids in the anammoxosome of anammox bacteria. This finding is particularly important because anammox bacteria use these ladderanes to build a very dense anammoxosome membrane and thus protect themselves from toxic intermediates like hydrazine. Furthermore, it is noteworthy that ladderanes, which are promising compounds for optoelectronics, have never been observed before in nature.
    • (2002) Nature , vol.419 , pp. 708-712
    • Sinninghe Damste, J.S.1    Strous, M.2    Rijpstra, W.I.3    Hopmans, E.C.4    Geenevasen, J.A.5    van Duin, A.C.6    van Niftrik, L.A.7    Jetten, M.S.8
  • 29
    • 23844470172 scopus 로고    scopus 로고
    • Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox)
    • Sinninghe Damste J.S., Rijpstra W.I., Geenevasen J.A., Strous M., and Jetten M.S. Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox). FEBS J 272 (2005) 4270-4283
    • (2005) FEBS J , vol.272 , pp. 4270-4283
    • Sinninghe Damste, J.S.1    Rijpstra, W.I.2    Geenevasen, J.A.3    Strous, M.4    Jetten, M.S.5
  • 35
    • 26844524280 scopus 로고    scopus 로고
    • Treatment of nitrogen-rich wastewater using partial nitrification and anammox in the CANON process
    • Third K.A., Paxman J., Schmid M., Strous M., Jetten M.S., and Cord-Ruwisch R. Treatment of nitrogen-rich wastewater using partial nitrification and anammox in the CANON process. Water Sci Technol 52 (2005) 47-54
    • (2005) Water Sci Technol , vol.52 , pp. 47-54
    • Third, K.A.1    Paxman, J.2    Schmid, M.3    Strous, M.4    Jetten, M.S.5    Cord-Ruwisch, R.6
  • 36
    • 11044223267 scopus 로고    scopus 로고
    • Nitrogen removal from sludge digester liquids by nitrification/denitrification or partial nitritation/anammox: environmental and economical considerations
    • Fux C., and Siegrist H. Nitrogen removal from sludge digester liquids by nitrification/denitrification or partial nitritation/anammox: environmental and economical considerations. Water Sci Technol 50 (2004) 19-26
    • (2004) Water Sci Technol , vol.50 , pp. 19-26
    • Fux, C.1    Siegrist, H.2
  • 37
    • 33645741019 scopus 로고    scopus 로고
    • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    • This manuscript shows the power of environmental genomics by the successful assembly of an annamox genome from a bioreactor community consisting of at least 29 different bacteria. Although no template genome of a closely related organism was available to assist the assembly process, more than 98% of the genome could be reconstructed and was used to develop new hypotheses on the metabolism and evolution of this uncultured organism.
    • Strous M., Pelletier E., Mangenot S., Rattei T., Lehner A., Taylor M.W., Horn M., Daims H., Bartol-Mavel D., Wincker P., et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440 (2006) 790-794. This manuscript shows the power of environmental genomics by the successful assembly of an annamox genome from a bioreactor community consisting of at least 29 different bacteria. Although no template genome of a closely related organism was available to assist the assembly process, more than 98% of the genome could be reconstructed and was used to develop new hypotheses on the metabolism and evolution of this uncultured organism.
    • (2006) Nature , vol.440 , pp. 790-794
    • Strous, M.1    Pelletier, E.2    Mangenot, S.3    Rattei, T.4    Lehner, A.5    Taylor, M.W.6    Horn, M.7    Daims, H.8    Bartol-Mavel, D.9    Wincker, P.10
  • 40
    • 1242306491 scopus 로고    scopus 로고
    • Chlamydia: five years A.G. (after genome)
    • Subtil A., and Dautry-Varsat A. Chlamydia: five years A.G. (after genome). Curr Opin Microbiol 7 (2004) 85-92
    • (2004) Curr Opin Microbiol , vol.7 , pp. 85-92
    • Subtil, A.1    Dautry-Varsat, A.2
  • 43
    • 8744221688 scopus 로고    scopus 로고
    • Characterization of 'Candidatus Piscichlamydia salmonis' (Order Chlamydiales), a chlamydia-like bacterium associated with epitheliocystis in farmed Atlantic salmon (Salmo salar)
    • 'Candidatus Piscichlamydia salmonis' represents a novel family within the phylum Chlamydiae and is the deepest branching 'chlamydia-like' organism identified so far. A more detailed analysis of these bacteria, which cause epitheliocystis in salmon but which have so far not been obtained in cell culture, should reveal novel insights into the evolution of chlamydiae and might allow further conclusions on their last common ancestor.
    • Draghi II A., Popov V.L., Kahl M.M., Stanton J.B., Brown C.C., Tsongalis G.J., West A.B., and Frasca Jr. S. Characterization of 'Candidatus Piscichlamydia salmonis' (Order Chlamydiales), a chlamydia-like bacterium associated with epitheliocystis in farmed Atlantic salmon (Salmo salar). J Clin Microbiol 42 (2004) 5286-5297. 'Candidatus Piscichlamydia salmonis' represents a novel family within the phylum Chlamydiae and is the deepest branching 'chlamydia-like' organism identified so far. A more detailed analysis of these bacteria, which cause epitheliocystis in salmon but which have so far not been obtained in cell culture, should reveal novel insights into the evolution of chlamydiae and might allow further conclusions on their last common ancestor.
    • (2004) J Clin Microbiol , vol.42 , pp. 5286-5297
    • Draghi II, A.1    Popov, V.L.2    Kahl, M.M.3    Stanton, J.B.4    Brown, C.C.5    Tsongalis, G.J.6    West, A.B.7    Frasca Jr., S.8
  • 44
    • 1842422505 scopus 로고    scopus 로고
    • 'Candidatus Rhabdochlamydia porcellionis', an intracellular bacterium from the hepatopancreas of the terrestrial isopod Porcellio scaber (Crustacea: Isopoda)
    • Kostanjsek R., Strus J., Drobne D., and Avgustin G. 'Candidatus Rhabdochlamydia porcellionis', an intracellular bacterium from the hepatopancreas of the terrestrial isopod Porcellio scaber (Crustacea: Isopoda). Int J Syst Evol Microbiol 54 (2004) 543-549
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 543-549
    • Kostanjsek, R.1    Strus, J.2    Drobne, D.3    Avgustin, G.4
  • 48
    • 15544378836 scopus 로고    scopus 로고
    • Production of a proteolytically active protein, chlamydial protease/proteasome-like activity factor, by five different Chlamydia species
    • Dong F., Zhong Y., Arulanandam B., and Zhong G. Production of a proteolytically active protein, chlamydial protease/proteasome-like activity factor, by five different Chlamydia species. Infect Immun 73 (2005) 1868-1872
    • (2005) Infect Immun , vol.73 , pp. 1868-1872
    • Dong, F.1    Zhong, Y.2    Arulanandam, B.3    Zhong, G.4
  • 50
    • 0141481267 scopus 로고    scopus 로고
    • History of the ADP/ATP-translocase-encoding gene, a parasitism gene transferred from a Chlamydiales ancestor to plants 1 billion years ago. [corrected]
    • Greub G., and Raoult D. History of the ADP/ATP-translocase-encoding gene, a parasitism gene transferred from a Chlamydiales ancestor to plants 1 billion years ago. [corrected]. Appl Environ Microbiol 69 (2003) 5530-5535
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5530-5535
    • Greub, G.1    Raoult, D.2
  • 51
    • 1642581500 scopus 로고    scopus 로고
    • ATP/ADP translocases: a common feature of obligate intracellular amoebal symbionts related to chlamydiae and rickettsiae
    • Schmitz-Esser S., Linka N., Collingro A., Beier C.L., Neuhaus H.E., Wagner M., and Horn M. ATP/ADP translocases: a common feature of obligate intracellular amoebal symbionts related to chlamydiae and rickettsiae. J Bacteriol 186 (2004) 683-691
    • (2004) J Bacteriol , vol.186 , pp. 683-691
    • Schmitz-Esser, S.1    Linka, N.2    Collingro, A.3    Beier, C.L.4    Neuhaus, H.E.5    Wagner, M.6    Horn, M.7
  • 53
    • 33744500489 scopus 로고    scopus 로고
    • Tapping the nucleotide pool of the host: novel nucleotide carrier proteins of Protochlamydia amoebophila
    • Haferkamp I., Schmitz-Esser S., Wagner M., Neigel N., Horn M., and Neuhaus H.E. Tapping the nucleotide pool of the host: novel nucleotide carrier proteins of Protochlamydia amoebophila. Mol Microbiol 60 (2006) 1534-1545
    • (2006) Mol Microbiol , vol.60 , pp. 1534-1545
    • Haferkamp, I.1    Schmitz-Esser, S.2    Wagner, M.3    Neigel, N.4    Horn, M.5    Neuhaus, H.E.6
  • 54
    • 0141780916 scopus 로고    scopus 로고
    • Parachlamydia acanthamoeba enters and multiplies within human macrophages and induces their apoptosis. [corrected]
    • Greub G., Mege J.-L., and Raoult D. Parachlamydia acanthamoeba enters and multiplies within human macrophages and induces their apoptosis. [corrected]. Infect Immun 71 (2003) 5979-5985
    • (2003) Infect Immun , vol.71 , pp. 5979-5985
    • Greub, G.1    Mege, J.-L.2    Raoult, D.3
  • 56
    • 33644951676 scopus 로고    scopus 로고
    • Molecular bacterial diversity of a forest soil under residue management regimes in subtropical Australia
    • He J., Xu Z., and Hughes J. Molecular bacterial diversity of a forest soil under residue management regimes in subtropical Australia. FEMS Microbiol Ecol 55 (2006) 38-47
    • (2006) FEMS Microbiol Ecol , vol.55 , pp. 38-47
    • He, J.1    Xu, Z.2    Hughes, J.3
  • 57
    • 4644363590 scopus 로고    scopus 로고
    • Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils
    • Hackl E., Zechmeister-Boltenstern S., Bodrossy L., and Sessitsch A. Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils. Appl Environ Microbiol 70 (2004) 5057-5065
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5057-5065
    • Hackl, E.1    Zechmeister-Boltenstern, S.2    Bodrossy, L.3    Sessitsch, A.4
  • 58
    • 8144230745 scopus 로고    scopus 로고
    • Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia
    • Sangwan P., Chen X., Hugenholtz P., and Janssen P.H. Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol 70 (2004) 5875-5881
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5875-5881
    • Sangwan, P.1    Chen, X.2    Hugenholtz, P.3    Janssen, P.H.4
  • 61
    • 3242782680 scopus 로고    scopus 로고
    • Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria
    • Schoenborn L., Yates P.S., Grinton B.E., Hugenholtz P., and Janssen P.H. Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria. Appl Environ Microbiol 70 (2004) 4363-4366
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4363-4366
    • Schoenborn, L.1    Yates, P.S.2    Grinton, B.E.3    Hugenholtz, P.4    Janssen, P.H.5
  • 62
    • 25144493755 scopus 로고    scopus 로고
    • Methanogen communities and Bacteria along an ecohydrological gradient in a northern raised bog complex
    • Juottonen H., Galand P.E., Tuittila E.S., Laine J., Fritze H., and Yrjala K. Methanogen communities and Bacteria along an ecohydrological gradient in a northern raised bog complex. Environ Microbiol 7 (2005) 1547-1557
    • (2005) Environ Microbiol , vol.7 , pp. 1547-1557
    • Juottonen, H.1    Galand, P.E.2    Tuittila, E.S.3    Laine, J.4    Fritze, H.5    Yrjala, K.6
  • 63
    • 14344253895 scopus 로고    scopus 로고
    • Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
    • Noll M., Matthies D., Frenzel P., Derakshani M., and Liesack W. Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ Microbiol 7 (2005) 382-395
    • (2005) Environ Microbiol , vol.7 , pp. 382-395
    • Noll, M.1    Matthies, D.2    Frenzel, P.3    Derakshani, M.4    Liesack, W.5
  • 64
    • 29144436638 scopus 로고    scopus 로고
    • Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp
    • Martiny A.C., Albrechtsen H.J., Arvin E., and Molin S. Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Appl Environ Microbiol 71 (2005) 8611-8617
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8611-8617
    • Martiny, A.C.1    Albrechtsen, H.J.2    Arvin, E.3    Molin, S.4
  • 65
    • 17844401490 scopus 로고    scopus 로고
    • Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms
    • Haukka K., Heikkinen E., Kairesalo T., Karjalainen H., and Sivonen K. Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms. Environ Microbiol 7 (2005) 620-630
    • (2005) Environ Microbiol , vol.7 , pp. 620-630
    • Haukka, K.1    Heikkinen, E.2    Kairesalo, T.3    Karjalainen, H.4    Sivonen, K.5
  • 67
    • 29144463361 scopus 로고    scopus 로고
    • Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time
    • Lindstrom E.S., Kamst-Van Agterveld M.P., and Zwart G. Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time. Appl Environ Microbiol 71 (2005) 8201-8206
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8201-8206
    • Lindstrom, E.S.1    Kamst-Van Agterveld, M.P.2    Zwart, G.3
  • 68
    • 10044278979 scopus 로고    scopus 로고
    • Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes
    • Eiler A., and Bertilsson S. Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 6 (2004) 1228-1243
    • (2004) Environ Microbiol , vol.6 , pp. 1228-1243
    • Eiler, A.1    Bertilsson, S.2
  • 69
    • 27744530866 scopus 로고    scopus 로고
    • Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries
    • Polymenakou P.N., Bertilsson S., Tselepides A., and Stephanou E.G. Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries. Microb Ecol 50 (2005) 447-462
    • (2005) Microb Ecol , vol.50 , pp. 447-462
    • Polymenakou, P.N.1    Bertilsson, S.2    Tselepides, A.3    Stephanou, E.G.4
  • 70
    • 33645522426 scopus 로고    scopus 로고
    • Diversity of 16S ribosomal DNA-defined bacterial population in acid rock drainage from Japanese pyrite mine
    • Okabayashi A., Wakai S., Kanao T., Sugio T., and Kamimura K. Diversity of 16S ribosomal DNA-defined bacterial population in acid rock drainage from Japanese pyrite mine. J Biosci Bioeng 100 (2005) 644-652
    • (2005) J Biosci Bioeng , vol.100 , pp. 644-652
    • Okabayashi, A.1    Wakai, S.2    Kanao, T.3    Sugio, T.4    Kamimura, K.5
  • 71
    • 11144254515 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill
    • Huang L.N., Zhu S., Zhou H., and Qu L.H. Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill. FEMS Microbiol Lett 242 (2005) 297-303
    • (2005) FEMS Microbiol Lett , vol.242 , pp. 297-303
    • Huang, L.N.1    Zhu, S.2    Zhou, H.3    Qu, L.H.4
  • 72
    • 0042921343 scopus 로고    scopus 로고
    • The microbial community in a 2,4-dinitrophenol-digesting reactor as revealed by 16S rDNA gene analysis
    • Kimura N., Shinozaki Y., Lee T.H., and Yonezawa Y. The microbial community in a 2,4-dinitrophenol-digesting reactor as revealed by 16S rDNA gene analysis. J Biosci Bioeng 96 (2003) 70-75
    • (2003) J Biosci Bioeng , vol.96 , pp. 70-75
    • Kimura, N.1    Shinozaki, Y.2    Lee, T.H.3    Yonezawa, Y.4
  • 74
    • 15944409588 scopus 로고    scopus 로고
    • Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective
    • Pallen M.J., Beatson S.A., and Bailey C.M. Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective. FEMS Microbiol Rev 29 (2005) 201-229
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 201-229
    • Pallen, M.J.1    Beatson, S.A.2    Bailey, C.M.3
  • 75
    • 0347596923 scopus 로고    scopus 로고
    • Isolation and characterization of a fucoidan-degrading marine bacterium
    • Sakai T., Ishizuka K., and Kato I. Isolation and characterization of a fucoidan-degrading marine bacterium. Mar Biotechnol 5 (2003) 409-416
    • (2003) Mar Biotechnol , vol.5 , pp. 409-416
    • Sakai, T.1    Ishizuka, K.2    Kato, I.3
  • 77
    • 24944540682 scopus 로고    scopus 로고
    • Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
    • Wang M., Ahrne S., Jeppsson B., and Molin G. Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol Ecol 54 (2005) 219-231
    • (2005) FEMS Microbiol Ecol , vol.54 , pp. 219-231
    • Wang, M.1    Ahrne, S.2    Jeppsson, B.3    Molin, G.4
  • 78
    • 5444248493 scopus 로고    scopus 로고
    • Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium
    • Derrien M., Vaughan E.E., Plugge C.M., and de Vos W.M. Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int J Syst Evol Microbiol 54 (2004) 1469-1476
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1469-1476
    • Derrien, M.1    Vaughan, E.E.2    Plugge, C.M.3    de Vos, W.M.4
  • 79
    • 0036272953 scopus 로고    scopus 로고
    • Use of the Verrucomicrobia-specific probe EUB338-III and fluorescent in situ hybridization for detection of 'Candidatus Xiphinematobacter' cells in nematode hosts
    • Vandekerckhove T.T., Coomans A., Cornelis K., Baert P., and Gillis M. Use of the Verrucomicrobia-specific probe EUB338-III and fluorescent in situ hybridization for detection of 'Candidatus Xiphinematobacter' cells in nematode hosts. Appl Environ Microbiol 68 (2002) 3121-3125
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3121-3125
    • Vandekerckhove, T.T.1    Coomans, A.2    Cornelis, K.3    Baert, P.4    Gillis, M.5
  • 80
    • 0034652128 scopus 로고    scopus 로고
    • Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia
    • Petroni G., Spring S., Schleifer K.H., Verni F., and Rosati G. Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia. Proc Natl Acad Sci USA 97 (2000) 1813-1817
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1813-1817
    • Petroni, G.1    Spring, S.2    Schleifer, K.H.3    Verni, F.4    Rosati, G.5
  • 81
  • 83
    • 21544481142 scopus 로고    scopus 로고
    • Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer
    • Schlieper D., Oliva M.A., Andreu J.M., and Lowe J. Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer. Proc Natl Acad Sci USA 102 (2005) 9170-9175
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9170-9175
    • Schlieper, D.1    Oliva, M.A.2    Andreu, J.M.3    Lowe, J.4
  • 84
    • 18544368222 scopus 로고    scopus 로고
    • In vitro assembly and GTP hydrolysis by bacterial tubulins BtubA and BtubB
    • Sontag C.A., Staley J.T., and Erickson H.P. In vitro assembly and GTP hydrolysis by bacterial tubulins BtubA and BtubB. J Cell Biol 169 (2005) 233-238
    • (2005) J Cell Biol , vol.169 , pp. 233-238
    • Sontag, C.A.1    Staley, J.T.2    Erickson, H.P.3
  • 85
    • 2942620063 scopus 로고    scopus 로고
    • Discovery of the novel candidate phylum 'Poribacteria' in marine sponges
    • Fieseler L., Horn M., Wagner M., and Hentschel U. Discovery of the novel candidate phylum 'Poribacteria' in marine sponges. Appl Environ Microbiol 70 (2004) 3724-3732
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3724-3732
    • Fieseler, L.1    Horn, M.2    Wagner, M.3    Hentschel, U.4
  • 86
    • 33644847782 scopus 로고    scopus 로고
    • Analysis of the first genome fragment from the marine sponge-associated, novel candidate phylum Poribacteria by environmental genomics
    • Fieseler L., Quaiser A., Schleper C., and Hentschel U. Analysis of the first genome fragment from the marine sponge-associated, novel candidate phylum Poribacteria by environmental genomics. Environ Microbiol 8 (2006) 612-624
    • (2006) Environ Microbiol , vol.8 , pp. 612-624
    • Fieseler, L.1    Quaiser, A.2    Schleper, C.3    Hentschel, U.4
  • 87
    • 0035210373 scopus 로고    scopus 로고
    • 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection
    • Schmid M., Schmitz-Esser S., Jetten M., and Wagner M. 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Environ Microbiol 3 (2001) 450-459
    • (2001) Environ Microbiol , vol.3 , pp. 450-459
    • Schmid, M.1    Schmitz-Esser, S.2    Jetten, M.3    Wagner, M.4
  • 88
    • 0024728302 scopus 로고
    • Evidence for unlinked rrn operons in the planctomycete Pirellula marina
    • Liesack W., and Stackebrandt E. Evidence for unlinked rrn operons in the planctomycete Pirellula marina. J Bacteriol 171 (1989) 5025-5030
    • (1989) J Bacteriol , vol.171 , pp. 5025-5030
    • Liesack, W.1    Stackebrandt, E.2
  • 89
    • 2642554918 scopus 로고    scopus 로고
    • Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae
    • The continuation of an impressive success story which shows again that many bacteria previously considered to be unculturable can be isolated using very low nutrient concentrations.
    • Cho J.C., Vergin K.L., Morris R.M., and Giovannoni S.J. Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae. Environ Microbiol 6 (2004) 611-621. The continuation of an impressive success story which shows again that many bacteria previously considered to be unculturable can be isolated using very low nutrient concentrations.
    • (2004) Environ Microbiol , vol.6 , pp. 611-621
    • Cho, J.C.1    Vergin, K.L.2    Morris, R.M.3    Giovannoni, S.J.4
  • 90
    • 0037214873 scopus 로고    scopus 로고
    • Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces
    • A very good paper that reports the first isolation of a bacterium belonging to the Lentisphaera phylum by using a smart enrichment technique.
    • Zoetendal E.G., Plugge C.M., Akkermans A.D., and de Vos W.M. Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces. Int J Syst Evol Microbiol 53 (2003) 211-215. A very good paper that reports the first isolation of a bacterium belonging to the Lentisphaera phylum by using a smart enrichment technique.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 211-215
    • Zoetendal, E.G.1    Plugge, C.M.2    Akkermans, A.D.3    de Vos, W.M.4
  • 91
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz P., Pitulle C., Hershberger K.L., and Pace N.R. Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180 (1998) 366-376
    • (1998) J Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 92
    • 27144551296 scopus 로고    scopus 로고
    • Intracellular compartmentation in planctomycetes
    • A detailed and well structured review on the structural cell plan of Planctomycetes. A must for all people interested in the field.
    • Fuerst J.A. Intracellular compartmentation in planctomycetes. Annu Rev Microbiol 59 (2005) 299-328. A detailed and well structured review on the structural cell plan of Planctomycetes. A must for all people interested in the field.
    • (2005) Annu Rev Microbiol , vol.59 , pp. 299-328
    • Fuerst, J.A.1
  • 93
    • 27644540151 scopus 로고    scopus 로고
    • FtsZ and the division of prokaryotic cells and organelles
    • Margolin W. FtsZ and the division of prokaryotic cells and organelles. Nat Rev Mol Cell Biol 6 (2005) 862-871
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 862-871
    • Margolin, W.1
  • 94
    • 31944450440 scopus 로고    scopus 로고
    • Building the invisible wall: updating the chlamydial peptidoglycan anomaly
    • To date, peptidogycan has not been detected in chlamydiae, although all chlamydiae encode an almost complete peptidoglycan biosynthesis pathway. This is an excellent review summarizing our current knowledge on potential roles of peptidoglycan in chlamydiae.
    • McCoy A.J., and Maurelli A.T. Building the invisible wall: updating the chlamydial peptidoglycan anomaly. Trends Microbiol 14 (2006) 70-77. To date, peptidogycan has not been detected in chlamydiae, although all chlamydiae encode an almost complete peptidoglycan biosynthesis pathway. This is an excellent review summarizing our current knowledge on potential roles of peptidoglycan in chlamydiae.
    • (2006) Trends Microbiol , vol.14 , pp. 70-77
    • McCoy, A.J.1    Maurelli, A.T.2
  • 95
    • 12844268310 scopus 로고    scopus 로고
    • Eukaryotic signature proteins of Prosthecobacter dejongeii and Gemmata sp. Wa-1 as revealed by in silico analysis
    • Staley J.T., Bouzek H., and Jenkins C. Eukaryotic signature proteins of Prosthecobacter dejongeii and Gemmata sp. Wa-1 as revealed by in silico analysis. FEMS Microbiol Lett 243 (2005) 9-14
    • (2005) FEMS Microbiol Lett , vol.243 , pp. 9-14
    • Staley, J.T.1    Bouzek, H.2    Jenkins, C.3
  • 96
    • 0347994912 scopus 로고    scopus 로고
    • Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus
    • Pearson A., Budin M., and Brocks J.J. Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus. Proc Natl Acad Sci USA 100 (2003) 15352-15357
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15352-15357
    • Pearson, A.1    Budin, M.2    Brocks, J.J.3
  • 97
    • 2942668180 scopus 로고    scopus 로고
    • Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees
    • Teeling H., Lombardot T., Bauer M., Ludwig W., and Glockner F.O. Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. Int J Syst Evol Microbiol 54 (2004) 791-801
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 791-801
    • Teeling, H.1    Lombardot, T.2    Bauer, M.3    Ludwig, W.4    Glockner, F.O.5
  • 98
    • 23044457732 scopus 로고    scopus 로고
    • Automatic selection of representative proteins for bacterial phylogeny
    • Bern M., and Goldberg D. Automatic selection of representative proteins for bacterial phylogeny. BMC Evol Biol 5 (2005) 34
    • (2005) BMC Evol Biol , vol.5 , pp. 34
    • Bern, M.1    Goldberg, D.2
  • 99
    • 0037118037 scopus 로고    scopus 로고
    • Phylogeny: a non-hyperthermophilic ancestor for bacteria
    • Brochier C., and Philippe H. Phylogeny: a non-hyperthermophilic ancestor for bacteria. Nature 417 (2002) 244
    • (2002) Nature , vol.417 , pp. 244
    • Brochier, C.1    Philippe, H.2
  • 100
    • 4844221596 scopus 로고    scopus 로고
    • Bacterial α2-macroglobulins: colonization factors acquired by horizontal gene transfer from the metazoan genome?
    • A very interesting paper which suggests that several bacteria that live in tight association with eukaryotes have acquired α2-macroglobulin from their hosts and might use this to block host antimicrobial defence.
    • Budd A., Blandin S., Levashina E.A., and Gibson T.J. Bacterial α2-macroglobulins: colonization factors acquired by horizontal gene transfer from the metazoan genome?. Genome Biol 5 (2004) R38. A very interesting paper which suggests that several bacteria that live in tight association with eukaryotes have acquired α2-macroglobulin from their hosts and might use this to block host antimicrobial defence.
    • (2004) Genome Biol , vol.5
    • Budd, A.1    Blandin, S.2    Levashina, E.A.3    Gibson, T.J.4
  • 101
    • 23944467129 scopus 로고    scopus 로고
    • New symbiotic hypothesis on the origin of eukaryotic flagella
    • Li J.Y., and Wu C.F. New symbiotic hypothesis on the origin of eukaryotic flagella. Naturwissenschaften 92 (2005) 305-309
    • (2005) Naturwissenschaften , vol.92 , pp. 305-309
    • Li, J.Y.1    Wu, C.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.