-
1
-
-
0026639881
-
Unusual resistance of peptidyl transferase to protein extraction procedures
-
COI: 1:CAS:528:DyaK38Xks1Ggsrw%3D
-
Noller H F, Hoffarth V, Zimniak L. Unusual resistance of peptidyl transferase to protein extraction procedures. Science, 1992, 256: 1416–1419
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
2
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
COI: 1:CAS:528:DC%2BD3cXlvFSnurs%3D
-
Nissen P, Hansen J, Ba N, Moore P B, Steitz T A. The structural basis of ribosome activity in peptide bond synthesis. Science, 2000, 289: 920–930
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ba, N.3
Moore, P.B.4
Steitz, T.A.5
-
3
-
-
7544220590
-
Substrate-assisted catalysis of peptide bond formation by the ribosome
-
COI: 1:CAS:528:DC%2BD2cXpt1ejsLg%3D
-
Weinger J S, Parnell K M, Dorner S, Green R, Strobel S A. Substrate-assisted catalysis of peptide bond formation by the ribosome. Nature Structural & Molecular Biology, 2004, 11: 1101–1106
-
(2004)
Nature Structural & Molecular Biology
, vol.11
, pp. 1101-1106
-
-
Weinger, J.S.1
Parnell, K.M.2
Dorner, S.3
Green, R.4
Strobel, S.A.5
-
4
-
-
43149097604
-
An uncharged amine in the transition state of the ribosomal peptidyl transfer reaction
-
COI: 1:CAS:528:DC%2BD1cXmtVSjsLs%3D
-
Kingery D A, Pfund E, Voorhees R M, Okuda K, Wohlgemuth I, Kitchen D E, RodninaMV, Strobel S A. An uncharged amine in the transition state of the ribosomal peptidyl transfer reaction. Chemistry & Biology, 2008, 15: 493–500
-
(2008)
Chemistry & Biology
, vol.15
, pp. 493-500
-
-
Kingery, D.A.1
Pfund, E.2
Voorhees, R.M.3
Okuda, K.4
Wohlgemuth, I.5
Kitchen, D.E.R.6
Strobel, S.A.7
-
5
-
-
84887624226
-
RNA catalyses nuclear pre-mRNA splicing
-
COI: 1:CAS:528:DC%2BC3sXhslOlsb7P
-
Fica S M, Tuttle N, Novak T, Li N S, Lu J, Koodathingal P, Dai Q, Staley J P, Piccirilli J A. RNA catalyses nuclear pre-mRNA splicing. Nature, 2013, 503: 229–234
-
(2013)
Nature
, vol.503
, pp. 229-234
-
-
Fica, S.M.1
Tuttle, N.2
Novak, T.3
Li, N.S.4
Lu, J.5
Koodathingal, P.6
Dai, Q.7
Staley, J.P.8
Piccirilli, J.A.9
-
6
-
-
75649116868
-
A structural analysis of the group II intron active site and implications for the spliceosome
-
Keating K S, Toor N, Perlman P S, Pyle A M. A structural analysis of the group II intron active site and implications for the spliceosome. RNA (New York, N.Y.), 2010, 16: 1–9
-
(2010)
RNA (New York, N.Y.)
, vol.16
, pp. 1-9
-
-
Keating, K.S.1
Toor, N.2
Perlman, P.S.3
Pyle, A.M.4
-
7
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
COI: 1:CAS:528:DyaL2cXpvFShsA%3D%3D
-
Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 1983, 35: 849–857
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
9
-
-
32644439149
-
Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana
-
COI: 1:CAS:528:DC%2BD2MXnt1yjt7s%3D
-
Przybilski R, Graf S, Lescoute A, Nellen W, Westhof E, Steger G, Hammann C. Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana. Plant Cell, 2005, 17: 1877–1885
-
(2005)
Plant Cell
, vol.17
, pp. 1877-1885
-
-
Przybilski, R.1
Graf, S.2
Lescoute, A.3
Nellen, W.4
Westhof, E.5
Steger, G.6
Hammann, C.7
-
10
-
-
78650501783
-
From alpaca to zebrafish: Hammerhead ribozymes wherever you look
-
COI: 1:CAS:528:DC%2BC3MXjs1Shug%3D%3D
-
Seehafer C, Kalweit A, Steger G, Graf S, Hammann C. From alpaca to zebrafish: Hammerhead ribozymes wherever you look. RNA (New York, N.Y.), 2011, 17: 21–26
-
(2011)
RNA (New York, N.Y.)
, vol.17
, pp. 21-26
-
-
Seehafer, C.1
Kalweit, A.2
Steger, G.3
Graf, S.4
Hammann, C.5
-
11
-
-
33749034196
-
A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
-
COI: 1:CAS:528:DC%2BD28Xpsl2qs78%3D
-
Salehi-Ashtiani K, Luptak A, Litovchick A, Szostak J W. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science, 2006, 313: 1788–1792
-
(2006)
Science
, vol.313
, pp. 1788-1792
-
-
Salehi-Ashtiani, K.1
Luptak, A.2
Litovchick, A.3
Szostak, J.W.4
-
12
-
-
72449145407
-
Widespread occurrence of self-cleaving ribozymes
-
COI: 1:CAS:528:DC%2BD1MXhtlyls7nJ
-
Webb C H, Riccitelli N J, Ruminski D J, Luptak A. Widespread occurrence of self-cleaving ribozymes. Science, 2009, 326: 953
-
(2009)
Science
, vol.326
, pp. 953
-
-
Webb, C.H.1
Riccitelli, N.J.2
Ruminski, D.J.3
Luptak, A.4
-
13
-
-
84891008536
-
A widespread self-cleaving ribozyme class is revealed by bioinformatics
-
COI: 1:CAS:528:DC%2BC3sXhslygtLjO
-
Roth A, Weinberg Z, Chen A G, Kim P B, Ames T D, Breaker R R. A widespread self-cleaving ribozyme class is revealed by bioinformatics. Nature Chemical Biology, 2014, 10: 56–60
-
(2014)
Nature Chemical Biology
, vol.10
, pp. 56-60
-
-
Roth, A.1
Weinberg, Z.2
Chen, A.G.3
Kim, P.B.4
Ames, T.D.5
Breaker, R.R.6
-
14
-
-
84937399217
-
New classes of self-cleaving ribozymes revealed by comparative genomics analysis
-
COI: 1:CAS:528:DC%2BC2MXht1WltLbO
-
Weinberg Z, Kim P B, Chen T H, Li S, Harris K A, Lunse C E, Breaker R R. New classes of self-cleaving ribozymes revealed by comparative genomics analysis. Nature Chemical Biology, 2015, 11: 606–610
-
(2015)
Nature Chemical Biology
, vol.11
, pp. 606-610
-
-
Weinberg, Z.1
Kim, P.B.2
Chen, T.H.3
Li, S.4
Harris, K.A.5
Lunse, C.E.6
Breaker, R.R.7
-
16
-
-
0014378880
-
The origin of the genetic code
-
COI: 1:CAS:528:DyaF1MXksVSiug%3D%3D
-
Crick F H C. The origin of the genetic code. Journal of Molecular Biology, 1968, 38: 367–379
-
(1968)
Journal of Molecular Biology
, vol.38
, pp. 367-379
-
-
Crick, F.H.C.1
-
17
-
-
0022845689
-
RNA catalysis and the origin of life
-
COI: 1:CAS:528:DyaL2sXivVyrtQ%3D%3D
-
Orgel L E. RNA catalysis and the origin of life. Journal of Theoretical Biology, 1986, 123: 127–149
-
(1986)
Journal of Theoretical Biology
, vol.123
, pp. 127-149
-
-
Orgel, L.E.1
-
18
-
-
62449245467
-
The evolution of ribozyme chemistry
-
COI: 1:CAS:528:DC%2BD1MXjsFehsr8%3D
-
Wilson T J, Lilley D M J. The evolution of ribozyme chemistry. Science, 2009, 323: 1436–1438
-
(2009)
Science
, vol.323
, pp. 1436-1438
-
-
Wilson, T.J.1
Lilley, D.M.J.2
-
19
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
COI: 1:CAS:528:DC%2BD2cXlt1CqtL8%3D
-
Adams P L, StahleyMR, Wang J, Strobel S A. Crystal structure of a self-splicing group I intron with both exons. Nature, 2004, 430: 45–50
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.S.1
Wang, J.2
Strobel, S.A.3
-
20
-
-
84868035651
-
Visualizing group II intron catalysis through the stages of splicing
-
COI: 1:CAS:528:DC%2BC38XhsF2htrnN
-
Marcia M, Pyle A M. Visualizing group II intron catalysis through the stages of splicing. Cell, 2012, 151: 497–507
-
(2012)
Cell
, vol.151
, pp. 497-507
-
-
Marcia, M.1
Pyle, A.M.2
-
22
-
-
0035340961
-
Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction
-
COI: 1:CAS:528:DC%2BD3MXisVans7s%3D
-
Shan S, Kravchuk A V, Piccirilli J A, Herschlag D. Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction. Biochemistry, 2001, 40: 5161–5171
-
(2001)
Biochemistry
, vol.40
, pp. 5161-5171
-
-
Shan, S.1
Kravchuk, A.V.2
Piccirilli, J.A.3
Herschlag, D.4
-
23
-
-
24944569654
-
Functional identification of catalytic metal ion binding sites within RNA
-
Hougland J L, Kravchuk A V, Herschlag D, Piccirilli J A. Functional identification of catalytic metal ion binding sites within RNA. PLoS Biology, 2005, 3: e277
-
(2005)
PLoS Biology
, vol.3
, pp. 277
-
-
Hougland, J.L.1
Kravchuk, A.V.2
Herschlag, D.3
Piccirilli, J.A.4
-
24
-
-
84861412668
-
Metalion rescue revisited: Biochemical detection of site-bound metal ions important for RNA folding
-
COI: 1:CAS:528:DC%2BC38XotVyms7k%3D
-
Frederiksen J K, Li N S, Das R, Herschlag D, Piccirilli J A. Metalion rescue revisited: Biochemical detection of site-bound metal ions important for RNA folding. RNA (New York, N.Y.), 2012, 18: 1123–1141
-
(2012)
RNA (New York, N.Y.)
, vol.18
, pp. 1123-1141
-
-
Frederiksen, J.K.1
Li, N.S.2
Das, R.3
Herschlag, D.4
Piccirilli, J.A.5
-
25
-
-
0032500731
-
A preorganised active site in the crystal structure of the Tetrahymena ribozyme
-
COI: 1:CAS:528:DyaK1cXmsF2jtLs%3D
-
Golden B L, Gooding A R, Podell E, Cech T R. A preorganised active site in the crystal structure of the Tetrahymena ribozyme. Science, 1998, 282: 259–264
-
(1998)
Science
, vol.282
, pp. 259-264
-
-
Golden, B.L.1
Gooding, A.R.2
Podell, E.3
Cech, T.R.4
-
26
-
-
24644492337
-
Structural evidence for a two-metal-ion mechanism of group I intron splicing
-
COI: 1:CAS:528:DC%2BD2MXpsFWju7g%3D
-
Stahley M R, Strobel S A. Structural evidence for a two-metal-ion mechanism of group I intron splicing. Science, 2005, 309: 1587–1590
-
(2005)
Science
, vol.309
, pp. 1587-1590
-
-
Stahley, M.R.1
Strobel, S.A.2
-
27
-
-
11444263264
-
Crystal structure of a phage Twort group I ribozyme-product complex
-
COI: 1:CAS:528:DC%2BD2MXhtVWltr8%3D
-
Golden B L, Kim H D, Chase E. Crystal structure of a phage Twort group I ribozyme-product complex. Nature Structural & Molecular Biology, 2005, 12: 82–89
-
(2005)
Nature Structural & Molecular Biology
, vol.12
, pp. 82-89
-
-
Golden, B.L.1
Kim, H.D.2
Chase, E.3
-
28
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
COI: 1:CAS:528:DC%2BD1cXktVKhtL8%3D
-
Toor N, Keating K S, Taylor S D, Pyle A M. Crystal structure of a self-spliced group II intron. Science, 2008, 320: 77–82
-
(2008)
Science
, vol.320
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
29
-
-
0033965261
-
Metal ion catalysis during the exon-ligation step of nuclear pre-mRNA splicing: Extending the parallels between the spliceosome and group II introns
-
COI: 1:CAS:528:DC%2BD3cXhtFKhsLw%3D
-
Gordon P M, Sontheimer E J, Piccirilli J A. Metal ion catalysis during the exon-ligation step of nuclear pre-mRNA splicing: Extending the parallels between the spliceosome and group II introns. RNA (New York, N.Y.), 2000, 6: 199–205
-
(2000)
RNA (New York, N.Y.)
, vol.6
, pp. 199-205
-
-
Gordon, P.M.1
Sontheimer, E.J.2
Piccirilli, J.A.3
-
30
-
-
0036263869
-
Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure
-
COI: 1:CAS:528:DC%2BD38XjvFOms7Y%3D
-
Huppler A, Nikstad L J, Allmann A M, Brow D A, Butcher S E. Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure. Nature Structural Biology, 2002, 9: 431–435
-
(2002)
Nature Structural Biology
, vol.9
, pp. 431-435
-
-
Huppler, A.1
Nikstad, L.J.2
Allmann, A.M.3
Brow, D.A.4
Butcher, S.E.5
-
31
-
-
58249114463
-
Mapping metal-binding sites in the catalytic domain of bacterial R Nase P RNA
-
COI: 1:CAS:528:DC%2BD1MXhs1Oju74%3D
-
Kazantsev A V, Krivenko A A, Pace N R. Mapping metal-binding sites in the catalytic domain of bacterial R Nase P RNA. RNA (New York, N.Y.), 2009, 15: 266–276
-
(2009)
RNA (New York, N.Y.)
, vol.15
, pp. 266-276
-
-
Kazantsev, A.V.1
Krivenko, A.A.2
Pace, N.R.3
-
32
-
-
0027949817
-
Value of general acid-base catalysis to Ribonuclease A
-
COI: 1:CAS:528:DyaK2cXktVers7g%3D
-
Thompson J E, Raines R T. Value of general acid-base catalysis to Ribonuclease A. Journal of the American Chemical Society, 1994, 116: 5467–5468
-
(1994)
Journal of the American Chemical Society
, vol.116
, pp. 5467-5468
-
-
Thompson, J.E.1
Raines, R.T.2
-
34
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
COI: 1:CAS:528:DC%2BD3MXjtVemurw%3D
-
Rupert P B, Ferré-D’Amaré A R. Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis. Nature, 2001, 410: 780–786
-
(2001)
Nature
, vol.410
, pp. 780-786
-
-
Rupert, P.B.1
Ferré-D’Amaré, A.R.2
-
35
-
-
2442641641
-
A conformational switch controls hepatitis delta virus ribozyme catalysis
-
COI: 1:CAS:528:DC%2BD2cXjvVKgsbw%3D
-
Ke A, Zhou K, Ding F, Cate J H, Doudna J A. A conformational switch controls hepatitis delta virus ribozyme catalysis. Nature, 2004, 429: 201–205
-
(2004)
Nature
, vol.429
, pp. 201-205
-
-
Ke, A.1
Zhou, K.2
Ding, F.3
Cate, J.H.4
Doudna, J.A.5
-
36
-
-
33746228126
-
Tertiary contacts distant from the active site prime a ribozyme for catalysis
-
COI: 1:CAS:528:DC%2BD28Xot1OntL4%3D
-
Martick M, Scott W G. Tertiary contacts distant from the active site prime a ribozyme for catalysis. Cell, 2006, 126: 309–320
-
(2006)
Cell
, vol.126
, pp. 309-320
-
-
Martick, M.1
Scott, W.G.2
-
37
-
-
33748325570
-
Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
-
COI: 1:CAS:528:DC%2BD28Xpsl2qs7o%3D
-
Klein D J, Ferré-D’Amaré A R. Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science, 2006, 313: 1752–1756
-
(2006)
Science
, vol.313
, pp. 1752-1756
-
-
Klein, D.J.1
Ferré-D’Amaré, A.R.2
-
38
-
-
33846279049
-
Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
-
COI: 1:CAS:528:DC%2BD2sXhtVaqtr4%3D
-
Cochrane J C, Lipchock S V, Strobel S A. Structural investigation of the GlmS ribozyme bound to its catalytic cofactor. Chemistry & Biology, 2007, 14: 97–105
-
(2007)
Chemistry & Biology
, vol.14
, pp. 97-105
-
-
Cochrane, J.C.1
Lipchock, S.V.2
Strobel, S.A.3
-
39
-
-
84906317571
-
Crystal structure and mechanistic investigation of the twister ribozyme
-
COI: 1:CAS:528:DC%2BC2cXhtFygs7jK
-
Liu Y, Wilson T J, McPhee S A, Lilley D M. Crystal structure and mechanistic investigation of the twister ribozyme. Nature Chemical Biology, 2014, 10: 739–744
-
(2014)
Nature Chemical Biology
, vol.10
, pp. 739-744
-
-
Liu, Y.1
Wilson, T.J.2
McPhee, S.A.3
Lilley, D.M.4
-
41
-
-
84922555795
-
2+ coordination at the cleavage site of the env22 twister ribozyme
-
COI: 1:CAS:528:DC%2BC2MXksVChs74%3D
-
2+ coordination at the cleavage site of the env22 twister ribozyme. Nature Communications, 2014, 5: 5534
-
(2014)
Nature Communications
, vol.5
, pp. 5534
-
-
Ren, A.1
Kosutic, M.2
Rajashankar, K.R.3
Frener, M.4
Santner, T.5
Westhof, E.6
Micura, R.7
Patel, D.J.8
-
42
-
-
84944877528
-
Crystal structure of the Varkud satellite ribozyme
-
COI: 1:CAS:528:DC%2BC2MXhsFeiu7bJ
-
Suslov N B, Das Gupta S, Huang H, Fuller J R, Lilley D M, Rice P A, Piccirilli J A. Crystal structure of the Varkud satellite ribozyme. Nature Chemical Biology, 2015, 11: 840–846
-
(2015)
Nature Chemical Biology
, vol.11
, pp. 840-846
-
-
Suslov, N.B.1
Das Gupta, S.2
Huang, H.3
Fuller, J.R.4
Lilley, D.M.5
Rice, P.A.6
Piccirilli, J.A.7
-
43
-
-
19644391548
-
Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site
-
COI: 1:CAS:528:DC%2BD2MXjvVeiu74%3D
-
Han J, Burke J M. Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site. Biochemistry, 2005, 44: 7864–7870
-
(2005)
Biochemistry
, vol.44
, pp. 7864-7870
-
-
Han, J.1
Burke, J.M.2
-
45
-
-
34249098371
-
A guanine nucleobase important for catalysis by the VS ribozyme
-
COI: 1:CAS:528:DC%2BD2sXlt1KksbY%3D
-
Wilson T J, Mc Leod A C, Lilley D M J. A guanine nucleobase important for catalysis by the VS ribozyme. EMBO Journal, 2007, 26: 2489–2500
-
(2007)
EMBO Journal
, vol.26
, pp. 2489-2500
-
-
Wilson, T.J.M.1
Leod, A.C.2
Lilley, D.M.J.3
-
46
-
-
65249184394
-
Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
-
COI: 1:CAS:528:DC%2BD1MXjs1Gksbo%3D
-
Cochrane J C, Lipchock S V, Smith K D, Strobel S A. Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme. Biochemistry, 2009, 48: 3239–3246
-
(2009)
Biochemistry
, vol.48
, pp. 3239-3246
-
-
Cochrane, J.C.1
Lipchock, S.V.2
Smith, K.D.3
Strobel, S.A.4
-
47
-
-
84867356016
-
General acid-base catalysis mediated by nucleobases in the hairpin ribozyme
-
COI: 1:CAS:528:DC%2BC38XhtlaisrrF
-
Kath-Schorr S, Wilson T J, Li N S, Lu J, Piccirilli J A, Lilley D M. General acid-base catalysis mediated by nucleobases in the hairpin ribozyme. Journal of the American Chemical Society, 2012, 134: 16717–16724
-
(2012)
Journal of the American Chemical Society
, vol.134
, pp. 16717-16724
-
-
Kath-Schorr, S.1
Wilson, T.J.2
Li, N.S.3
Lu, J.4
Piccirilli, J.A.5
Lilley, D.M.6
-
48
-
-
0035965132
-
The A730 loop is an important component of the active site of the VS ribozyme
-
COI: 1:CAS:528:DC%2BD3MXntV2msbo%3D
-
Lafontaine D A, Wilson T J, Norman D G, Lilley D M J. The A730 loop is an important component of the active site of the VS ribozyme. Journal of Molecular Biology, 2001, 312: 663–674
-
(2001)
Journal of Molecular Biology
, vol.312
, pp. 663-674
-
-
Lafontaine, D.A.1
Wilson, T.J.2
Norman, D.G.3
Lilley, D.M.J.4
-
49
-
-
0037111875
-
Transition state stabilization by a catalytic RNA
-
COI: 1:CAS:528:DC%2BD38Xos1Wntr0%3D
-
Rupert P B, Massey A P, Sigurdsson S T, Ferré-D’Amaré A R. Transition state stabilization by a catalytic RNA. Science, 2002, 298: 1421–1424
-
(2002)
Science
, vol.298
, pp. 1421-1424
-
-
Rupert, P.B.1
Massey, A.P.2
Sigurdsson, S.T.3
Ferré-D’Amaré, A.R.4
-
50
-
-
77955394614
-
Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme
-
COI: 1:CAS:528:DC%2BC3cXovVarsLo%3D
-
Wilson T J, Li N S, Lu J, Frederiksen J K, Piccirilli J A, Lilley D M J. Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme. Proceedings of the National Academy of Sciences of the United States of America, 2010, 107: 11751–11756
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 11751-11756
-
-
Wilson, T.J.1
Li, N.S.2
Lu, J.3
Frederiksen, J.K.4
Piccirilli, J.A.5
Lilley, D.M.J.6
-
51
-
-
78751487465
-
Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data
-
COI: 1:CAS:528:DC%2BC3MXhsF2rs7k%3D
-
Wilson T J, Lilley D M J. Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data. RNA (New York, N.Y.), 2011, 17: 213–221
-
(2011)
RNA (New York, N.Y.)
, vol.17
, pp. 213-221
-
-
Wilson, T.J.1
Lilley, D.M.J.2
-
52
-
-
0034712097
-
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
-
COI: 1:CAS:528:DC%2BD3cXhsV2qtLw%3D
-
Nakano S, Chadalavada D M, Bevilacqua P C. General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme. Science, 2000, 287: 1493–1497
-
(2000)
Science
, vol.287
, pp. 1493-1497
-
-
Nakano, S.1
Chadalavada, D.M.2
Bevilacqua, P.C.3
-
53
-
-
24644454458
-
General acid catalysis by the hepatitis delta virus ribozyme
-
COI: 1:CAS:528:DC%2BD2MXls1Omsrc%3D
-
Das S R, Piccirilli J A. General acid catalysis by the hepatitis delta virus ribozyme. Nature Chemical Biology, 2005, 1: 45–52
-
(2005)
Nature Chemical Biology
, vol.1
, pp. 45-52
-
-
Das, S.R.1
Piccirilli, J.A.2
-
54
-
-
77955258795
-
1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage
-
COI: 1:CAS:528:DC%2BC3cXptVSls7c%3D
-
Chen J H, Yajima R, Chadalavada D M, Chase E, Bevilacqua P C, Golden B L A. 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry, 2010, 49: 6508–6518
-
(2010)
Biochemistry
, vol.49
, pp. 6508-6518
-
-
Chen, J.H.1
Yajima, R.2
Chadalavada, D.M.3
Chase, E.4
Bevilacqua, P.C.5
Golden, B.L.A.6
-
55
-
-
27744525243
-
Ligand requirements for glmS ribozyme self-cleavage
-
COI: 1:CAS:528:DC%2BD2MXht1aqu73I
-
McCarthy T J, Plog MA, Floy S A, Jansen J A, Soukup J K, Soukup G A. Ligand requirements for glmS ribozyme self-cleavage. Chemistry & Biology, 2005, 12: 1221–1226
-
(2005)
Chemistry & Biology
, vol.12
, pp. 1221-1226
-
-
McCarthy, T.J.1
Plog, M.A.2
Floy, S.A.3
Jansen, J.A.4
Soukup, J.K.5
Soukup, G.A.6
-
56
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
COI: 1:CAS:528:DC%2BD2cXitFCntbk%3D
-
Winkler W C, Nahvi A, Roth A, Collins J A, Breaker R R. Control of gene expression by a natural metabolite-responsive ribozyme. Nature, 2004, 428: 281–286
-
(2004)
Nature
, vol.428
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
57
-
-
0001571550
-
Autolytic processing of dimeric plant virus satellite RNA
-
COI: 1:CAS:528:DyaL28XhsVCisb8%3D
-
Prody G A, Bakos J T, Buzayan J M, Schneider I R, Bruening G. Autolytic processing of dimeric plant virus satellite RNA. Science, 1986, 231: 1577–1580
-
(1986)
Science
, vol.231
, pp. 1577-1580
-
-
Prody, G.A.1
Bakos, J.T.2
Buzayan, J.M.3
Schneider, I.R.4
Bruening, G.5
-
58
-
-
0023663396
-
Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites
-
COI: 1:CAS:528:DyaL1cXovFyitQ%3D%3D
-
Forster A C, Symons R H. Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites. Cell, 1987, 49: 211–220
-
(1987)
Cell
, vol.49
, pp. 211-220
-
-
Forster, A.C.1
Symons, R.H.2
-
59
-
-
41449099097
-
2+ in hammerhead ribozyme catalysis from molecular simulation
-
COI: 1:CAS:528:DC%2BD1cXitVanuro%3D
-
2+ in hammerhead ribozyme catalysis from molecular simulation. Journal of the American Chemical Society, 2008, 130: 3053–3064
-
(2008)
Journal of the American Chemical Society
, vol.130
, pp. 3053-3064
-
-
Lee, T.S.1
Silva, L.C.2
Giambasu, G.M.3
Martick, M.4
Scott, W.G.5
York, D.M.6
-
60
-
-
61749098364
-
Probing general acid catalysis in the hammerhead ribozyme
-
COI: 1:CAS:528:DC%2BD1MXhvFKhug%3D%3D
-
Thomas J M, Perrin D M. Probing general acid catalysis in the hammerhead ribozyme. Journal of the American Chemical Society, 2009, 131: 1135–1143
-
(2009)
Journal of the American Chemical Society
, vol.131
, pp. 1135-1143
-
-
Thomas, J.M.1
Perrin, D.M.2
-
61
-
-
0035906978
-
RNA-catalyzed RNA polymerization: Accurate and general RNAtemplated primer extension
-
COI: 1:CAS:528:DC%2BD3MXjvVGjsbg%3D
-
Johnston W K, Unrau P J, Lawrence M S, Glasner M E, Bartel D P. RNA-catalyzed RNA polymerization: Accurate and general RNAtemplated primer extension. Science, 2001, 292: 1319–1325
-
(2001)
Science
, vol.292
, pp. 1319-1325
-
-
Johnston, W.K.1
Unrau, P.J.2
Lawrence, M.S.3
Glasner, M.E.4
Bartel, D.P.5
-
62
-
-
84894496654
-
Highly efficient self-replicating RNA enzymes
-
COI: 1:CAS:528:DC%2BC2cXisV2isg%3D%3D
-
Robertson M P, Joyce G F. Highly efficient self-replicating RNA enzymes. Chemistry & Biology, 2014, 21: 238–245
-
(2014)
Chemistry & Biology
, vol.21
, pp. 238-245
-
-
Robertson, M.P.1
Joyce, G.F.2
-
63
-
-
84890042199
-
In-ice evolution of RNA polymerase ribozyme activity
-
COI: 1:CAS:528:DC%2BC3sXhs1Citb%2FJ
-
Attwater J, Wochner A, Holliger P. In-ice evolution of RNA polymerase ribozyme activity. Nature Chemistry, 2013, 5: 1011–1018
-
(2013)
Nature Chemistry
, vol.5
, pp. 1011-1018
-
-
Attwater, J.1
Wochner, A.2
Holliger, P.3
-
64
-
-
0029147392
-
Structurally complex and highly active RNA ligases derived from random RNA sequences
-
COI: 1:STN:280:DyaK2Mzktleltw%3D%3D
-
Ekland E H, Szostak J W, Bartel D P. Structurally complex and highly active RNA ligases derived from random RNA sequences. Science, 1995, 269: 364–370
-
(1995)
Science
, vol.269
, pp. 364-370
-
-
Ekland, E.H.1
Szostak, J.W.2
Bartel, D.P.3
-
65
-
-
70849121359
-
Crystal structure of the catalytic core of an RNApolymerase ribozyme
-
COI: 1:CAS:528:DC%2BD1MXhsVKhtbfI
-
Shechner D M, Grant R A, Bagby S C, Koldobskaya Y, Piccirilli J A, Bartel D P. Crystal structure of the catalytic core of an RNApolymerase ribozyme. Science, 2009, 326: 1271–1275
-
(2009)
Science
, vol.326
, pp. 1271-1275
-
-
Shechner, D.M.1
Grant, R.A.2
Bagby, S.C.3
Koldobskaya, Y.4
Piccirilli, J.A.5
Bartel, D.P.6
-
66
-
-
0342936265
-
Novel RNA catalysts for the Michael reaction
-
COI: 1:CAS:528:DC%2BD3MXktlSrtLc%3D
-
Sengle G, Eisenfuhr A, Arora P S, Nowick J S, Famulok M. Novel RNA catalysts for the Michael reaction. Chemistry & Biology, 2001, 8: 459–473
-
(2001)
Chemistry & Biology
, vol.8
, pp. 459-473
-
-
Sengle, G.1
Eisenfuhr, A.2
Arora, P.S.3
Nowick, J.S.4
Famulok, M.5
-
67
-
-
23944508560
-
A ribozyme for the aldol reaction
-
COI: 1:CAS:528:DC%2BD2MXptVektrk%3D
-
Fusz S, Eisenfuhr A, Srivatsan S G, Heckel A, Famulok M. A ribozyme for the aldol reaction. Chemistry & Biology, 2005, 12: 941–950
-
(2005)
Chemistry & Biology
, vol.12
, pp. 941-950
-
-
Fusz, S.1
Eisenfuhr, A.2
Srivatsan, S.G.3
Heckel, A.4
Famulok, M.5
-
68
-
-
28244495084
-
A DNA-templated aldol reaction as a model for the formation of pentose sugars in the RNA world
-
COI: 1:CAS:528:DC%2BD2MXhtlalsb3P
-
Oberhuber M, Joyce G F. A DNA-templated aldol reaction as a model for the formation of pentose sugars in the RNA world. Angewandte Chemie, 2005, 44: 7580–7583
-
(2005)
Angewandte Chemie
, vol.44
, pp. 7580-7583
-
-
Oberhuber, M.1
Joyce, G.F.2
-
69
-
-
0033102314
-
A small catalytic RNA motif with Diels- Alderase activity
-
COI: 1:CAS:528:DyaK1MXhs1yqs7w%3D
-
Seelig B, Jäschke A. A small catalytic RNA motif with Diels- Alderase activity. Chemistry & Biology, 1999, 6: 167–176
-
(1999)
Chemistry & Biology
, vol.6
, pp. 167-176
-
-
Seelig, B.J.A.1
-
71
-
-
0036760723
-
Coenzymes as coribozymes
-
COI: 1:CAS:528:DC%2BD38XovFeku7c%3D
-
Jadhav V R, Yarus M. Coenzymes as coribozymes. Biochimie, 2002, 84: 877–888
-
(2002)
Biochimie
, vol.84
, pp. 877-888
-
-
Jadhav, V.R.1
Yarus, M.2
-
72
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
COI: 1:CAS:528:DC%2BC3MXhtFymsLjM
-
Breaker R R. Prospects for riboswitch discovery and analysis. Molecular Cell, 2011, 43: 867–879
-
(2011)
Molecular Cell
, vol.43
, pp. 867-879
-
-
Breaker, R.R.1
-
73
-
-
0142075327
-
Genetic control by metabolite-binding riboswitches
-
COI: 1:CAS:528:DC%2BD3sXotlSrt7Y%3D
-
Winkler W C, Breaker R R. Genetic control by metabolite-binding riboswitches. ChemBioChem, 2003, 4: 1024–1032
-
(2003)
ChemBioChem
, vol.4
, pp. 1024-1032
-
-
Winkler, W.C.1
Breaker, R.R.2
-
74
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
COI: 1:CAS:528:DC%2BD38Xot1Kluro%3D
-
Winkler W, Nahvi A, Breaker R R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature, 2002, 419: 952–956
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
75
-
-
84899854695
-
The k-junction motif in RNA structure
-
COI: 1:CAS:528:DC%2BC2cXntlyksL0%3D
-
Wang J, Daldrop P, Huang L, Lilley D M. The k-junction motif in RNA structure. Nucleic Acids Research, 2014, 42: 5322–5331
-
(2014)
Nucleic Acids Research
, vol.42
, pp. 5322-5331
-
-
Wang, J.1
Daldrop, P.2
Huang, L.3
Lilley, D.M.4
-
76
-
-
33744469562
-
Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand
-
COI: 1:CAS:528:DC%2BD28XkvVOiu7c%3D
-
Thore S, Leibundgut M, Ban N. Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand. Science, 2006, 312: 1208–1211
-
(2006)
Science
, vol.312
, pp. 1208-1211
-
-
Thore, S.1
Leibundgut, M.2
Ban, N.3
-
77
-
-
33745635350
-
Structural basis for gene regulation by a thiamine pyrophosphatesensing riboswitch
-
COI: 1:CAS:528:DC%2BD28Xmtlaiurc%3D
-
Serganov A, Polonskaia A, Phan A T, Breaker R R, Patel D J. Structural basis for gene regulation by a thiamine pyrophosphatesensing riboswitch. Nature, 2006, 441: 1167–1171
-
(2006)
Nature
, vol.441
, pp. 1167-1171
-
-
Serganov, A.1
Polonskaia, A.2
Phan, A.T.3
Breaker, R.R.4
Patel, D.J.5
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