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Volumn 48, Issue 15, 2009, Pages 3239-3246

Structural and chemical basis for Glucosamine 6-phosphate binding and activation Of the glmS ribozyme

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITES; ANTHRACIS; BACILLUS ANTHRACIS; BINDING MODES; CATALYTIC RNAS; COFACTOR; GLUCOSAMINE 6 PHOSPHATES; KINETIC ANALYSIS; LIGAND BINDINGS; MANNOSAMINE; PH DEPENDENCES; PHOSPHATE GROUPS; RIBOZYME; STRUCTURAL WORKS;

EID: 65249184394     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi802069p     Document Type: Article
Times cited : (74)

References (22)
  • 1
    • 51649103765 scopus 로고    scopus 로고
    • Catalytic strategies of self-cleaving ribozymes
    • Cochrane, J. C., and Strobel, S. A. (2008) Catalytic strategies of self-cleaving ribozymes. Acc. Chem. Res. 41, 1027-1035.
    • (2008) Acc. Chem. Res , vol.41 , pp. 1027-1035
    • Cochrane, J.C.1    Strobel, S.A.2
  • 3
    • 33846279049 scopus 로고    scopus 로고
    • Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
    • Cochrane, J. C., Lipchock, S. V., and Strobel, S. A. (2007) Structural investigation of the GlmS ribozyme bound to its catalytic cofactor. Chem. Biol. 14, 97-105.
    • (2007) Chem. Biol , vol.14 , pp. 97-105
    • Cochrane, J.C.1    Lipchock, S.V.2    Strobel, S.A.3
  • 4
    • 36849061230 scopus 로고    scopus 로고
    • Essential role of an active-site guanine in glmS ribozyme catalysis
    • Klein, D. J., Been, M. D., and Ferré-D'Amaré, A. R. (2007) Essential role of an active-site guanine in glmS ribozyme catalysis. J. Am. Chem. Soc. 129, 14858-14859.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 14858-14859
    • Klein, D.J.1    Been, M.D.2    Ferré-D'Amaré, A.R.3
  • 5
    • 1642586299 scopus 로고    scopus 로고
    • Control of gene expression by a natural metabolite-responsive ribozyme
    • Winkler, W. C., Nahvi, A., Roth, A., Collins, J. A., and Breaker, R. R. (2004) Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428, 281-286.
    • (2004) Nature , vol.428 , pp. 281-286
    • Winkler, W.C.1    Nahvi, A.2    Roth, A.3    Collins, J.A.4    Breaker, R.R.5
  • 6
    • 27144527479 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by riboswitches
    • Winkler, W. C., and Breaker, R. R. (2005) Regulation of bacterial gene expression by riboswitches. Annu. Rev. Microbiol. 59, 487-517.
    • (2005) Annu. Rev. Microbiol , vol.59 , pp. 487-517
    • Winkler, W.C.1    Breaker, R.R.2
  • 8
    • 33746920364 scopus 로고    scopus 로고
    • Evidence for preorganization of the glmS ribozyme ligand binding pocket
    • Hampel, K. J., and Tinsley, M. M. (2006) Evidence for preorganization of the glmS ribozyme ligand binding pocket. Biochemistry 45, 7861-7871.
    • (2006) Biochemistry , vol.45 , pp. 7861-7871
    • Hampel, K.J.1    Tinsley, M.M.2
  • 9
    • 33748325570 scopus 로고    scopus 로고
    • Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
    • Klein, D. J., and Ferré-D'Amaré, A. R. (2006) Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science 313, 1752-1756.
    • (2006) Science , vol.313 , pp. 1752-1756
    • Klein, D.J.1    Ferré-D'Amaré, A.R.2
  • 10
    • 34548591567 scopus 로고    scopus 로고
    • Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme
    • Klein, D. J., Wilkinson, S. R., Been, M. D., and Ferré- D'Amaré, A. R. (2007) Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme. J. Mol. Biol. 373, 178-189.
    • (2007) J. Mol. Biol , vol.373 , pp. 178-189
    • Klein, D.J.1    Wilkinson, S.R.2    Been, M.D.3    Ferré- D'Amaré, A.R.4
  • 11
    • 0035864807 scopus 로고    scopus 로고
    • Comparison of chemical and enzymatic synthesis of 2-acetamido-2-deoxy-D-mannose 6-phos-phate: A new approach
    • Liu, M. Z., and Lee, Y. C. (2001) Comparison of chemical and enzymatic synthesis of 2-acetamido-2-deoxy-D-mannose 6-phos-phate: a new approach. Carbohydr. Res. 330, 413-419.
    • (2001) Carbohydr. Res , vol.330 , pp. 413-419
    • Liu, M.Z.1    Lee, Y.C.2
  • 13
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 16
    • 0035182073 scopus 로고    scopus 로고
    • Use of TLS parameters to model anisotropic displacements in macromolecular refinement
    • Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr., Sect. D: Biol. Crystallogr. 57, 122-133.
    • (2001) Acta Crystallogr., Sect. D: Biol. Crystallogr , vol.57 , pp. 122-133
    • Winn, M.D.1    Isupov, M.N.2    Murshudov, G.N.3
  • 19
    • 33750149294 scopus 로고    scopus 로고
    • Characteristics of ligand recognition by a glmS self-cleaving ribozyme
    • Lim, J., Grove, B. C., Roth, A., and Breaker, R. R. (2006) Characteristics of ligand recognition by a glmS self-cleaving ribozyme. Angew. Chem., Int. Ed. Engl. 45, 6689-6693.
    • (2006) Angew. Chem., Int. Ed. Engl , vol.45 , pp. 6689-6693
    • Lim, J.1    Grove, B.C.2    Roth, A.3    Breaker, R.R.4
  • 20
    • 0038210214 scopus 로고    scopus 로고
    • Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
    • Mandal, M., Boese, B., Barrick, J. E., Winkler, W. C., and Breaker, R. R. (2003) Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria Cell 113, 577-586.
    • (2003) Cell , vol.113 , pp. 577-586
    • Mandal, M.1    Boese, B.2    Barrick, J.E.3    Winkler, W.C.4    Breaker, R.R.5
  • 21
    • 5044234799 scopus 로고    scopus 로고
    • A glycine-dependent riboswitch that uses cooperative binding to control gene expression
    • Mandal, M., Lee, M., Barrick, J. E., Weinberg, Z., Emilsson, G. M., Ruzzo, W. L., and Breaker, R. R. (2004) A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306, 275-279.
    • (2004) Science , vol.306 , pp. 275-279
    • Mandal, M.1    Lee, M.2    Barrick, J.E.3    Weinberg, Z.4    Emilsson, G.M.5    Ruzzo, W.L.6    Breaker, R.R.7
  • 22
    • 0004155427 scopus 로고
    • 4th ed, W. H. Freeman, New York
    • Stryer, L. (1995) Biochemistry, 4th ed., W. H. Freeman, New York.
    • (1995) Biochemistry
    • Stryer, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.