메뉴 건너뛰기




Volumn 5, Issue JANUARY2016, 2016, Pages

Population genomics reveals the origin and asexual evolution of human infective trypanosomes

Author keywords

[No Author keywords available]

Indexed keywords

GENE MUTATION; GENOMICS; HETEROZYGOSITY LOSS; HUMAN; MUTATION; PATHOGENESIS; TRYPANOSOMA BRUCEI GAMBIENSE; ASEXUAL REPRODUCTION; GENETICS; METAGENOMICS; MOLECULAR EVOLUTION; PARASITOLOGY; TRYPANOSOMIASIS;

EID: 84956905033     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.11473     Document Type: Article
Times cited : (75)

References (51)
  • 1
    • 70949106022 scopus 로고    scopus 로고
    • Haploview: Visualization and analysis of SNP genotype data
    • Barrett JC. 2009. Haploview: Visualization and analysis of SNP genotype data. Cold Spring Harbor Protocols 2009:pdb.ip71. doi: 10.1101/pdb.ip71.
    • (2009) Cold Spring Harbor Protocols
    • Barrett, J.C.1
  • 3
    • 9544240447 scopus 로고    scopus 로고
    • Heterozygosity, heteromorphy, and phylogenetic trees in asexual eukaryotes
    • Birky CW. 1996. Heterozygosity, heteromorphy, and phylogenetic trees in asexual eukaryotes. Genetics 144: 427–437.
    • (1996) Genetics , vol.144 , pp. 427-437
    • Birky, C.W.1
  • 4
    • 0036203924 scopus 로고    scopus 로고
    • Opinion — evolution of sex: The costs and benefits of sex: New insights from old asexual lineages
    • Butlin R. 2002. Opinion — evolution of sex: The costs and benefits of sex: new insights from old asexual lineages. Nature Reviews Genetics 3:311–317. doi: 10.1038/nrg749.
    • (2002) Nature Reviews Genetics , vol.3 , pp. 311-317
    • Butlin, R.1
  • 8
    • 0019134930 scopus 로고
    • The cost of sex in relation to mating system
    • Charlesworth B. 1980. The cost of sex in relation to mating system. Journal of Theoretical Biology 84:655–671. doi: 10.1016/S0022-5193(80)80026-9.
    • (1980) Journal of Theoretical Biology , vol.84 , pp. 655-671
    • Charlesworth, B.1
  • 10
    • 48249106249 scopus 로고    scopus 로고
    • Genetic analysis of the human infective trypanosome trypanosoma brucei gambiense: Chromosomal segregation, crossing over, and the construction of a genetic map
    • Cooper A, Tait A, Sweeney L, Tweedie A, Morrison L, Turner CMR, MacLeod A. 2008. Genetic analysis of the human infective trypanosome trypanosoma brucei gambiense: Chromosomal segregation, crossing over, and the construction of a genetic map. Genome Biology 9:R103. doi: 10.1186/gb-2008-9-6-r103.
    • (2008) Genome Biology , vol.9
    • Cooper, A.1    Tait, A.2    Sweeney, L.3    Tweedie, A.4    Morrison, L.5    Turner, C.6    Macleod, A.7
  • 12
    • 84856478855 scopus 로고    scopus 로고
    • A linear complexity phasing method for thousands of genomes
    • Delaneau O, Marchini J, Zagury J-F. 2012. A linear complexity phasing method for thousands of genomes. Nature Methods 9:179–181. doi: 10.1038/nmeth.1785.
    • (2012) Nature Methods , vol.9 , pp. 179-181
    • Delaneau, O.1    Marchini, J.2    Zagury, J.-F.3
  • 13
    • 84871952176 scopus 로고    scopus 로고
    • Improved whole-chromosome phasing for disease and population genetic studies
    • Delaneau O, Zagury J-F, Marchini J. 2013. Improved whole-chromosome phasing for disease and population genetic studies. Nature Methods 10:5–6. doi: 10.1038/nmeth.2307.
    • (2013) Nature Methods , vol.10 , pp. 5-6
    • Delaneau, O.1    Zagury, J.-F.2    Marchini, J.3
  • 14
    • 0345884909 scopus 로고    scopus 로고
    • Inference of viral evolutionary rates from molecular sequences
    • Drummond A, Pybus OG, Rambaut A. 2003. Inference of viral evolutionary rates from molecular sequences. Advances in Parasitology 54:331–358.
    • (2003) Advances in Parasitology , vol.54 , pp. 331-358
    • Drummond, A.1    Pybus, O.G.2    Rambaut, A.3
  • 16
    • 45149091409 scopus 로고    scopus 로고
    • The parasexual cycle in candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains
    • Forche A, Alby K, Schaefer D, Johnson AD, Berman J, Bennett RJ, Heitman J. 2008. The parasexual cycle in candida albicans provides an alternative pathway to meiosis for the formation of recombinant strains. PLoS Biology 6:e110. doi: 10.1371/journal.pbio.0060110.
    • (2008) Plos Biology , vol.6
    • Forche, A.1    Alby, K.2    Schaefer, D.3    Johnson, A.D.4    Berman, J.5    Bennett, R.J.6    Heitman, J.7
  • 18
    • 0033044388 scopus 로고    scopus 로고
    • Genetic exchange in the trypanosomatidae
    • Gibson W, Stevens J. 1999. Genetic exchange in the trypanosomatidae. Advances in Parasitolgy 43:1–46. doi: 10.1016/S0065-308X(08)60240-7.
    • (1999) Advances in Parasitolgy , vol.43 , pp. 1-46
    • Gibson, W.1    Stevens, J.2
  • 20
    • 85007320774 scopus 로고
    • FSTAT (Version 1.2): A computer program to calculate f-statistics
    • Goudet J. 1995. FSTAT (version 1.2): A computer program to calculate f-statistics. Journal of Heredity 86:485–486.
    • (1995) Journal of Heredity , vol.86 , pp. 485-486
    • Goudet, J.1
  • 21
    • 33750627298 scopus 로고    scopus 로고
    • Sexual reproduction and the evolution of microbial pathogens
    • Heitman J. 2006. Sexual reproduction and the evolution of microbial pathogens. Current Biology 16:R711–R725. doi: 10.1016/j.cub.2006.07.064.
    • (2006) Current Biology , vol.16
    • Heitman, J.1
  • 22
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23:254–267. doi: 10.1093/molbev/msj030.
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 27
    • 4444319904 scopus 로고    scopus 로고
    • Haplotype and missing data inference in nuclear families
    • Lin S, Chakravarti A, Cutler DJ. 2004. Haplotype and missing data inference in nuclear families. Genome Research 14:1624–1632. doi: 10.1101/gr.2204604.
    • (2004) Genome Research , vol.14 , pp. 1624-1632
    • Lin, S.1    Chakravarti, A.2    Cutler, D.J.3
  • 29
    • 0034686084 scopus 로고    scopus 로고
    • Evidence for the evolution of bdelloid rotifers without sexual reproduction or genetic exchange
    • Mark Welch D, Meselson M. 2000. Evidence for the evolution of bdelloid rotifers without sexual reproduction or genetic exchange. Science 288:1211–1215. doi: 10.1126/science.288.5469.1211.
    • (2000) Science , vol.288 , pp. 1211-1215
    • Mark Welch, D.1    Meselson, M.2
  • 32
    • 55649121367 scopus 로고    scopus 로고
    • Trypanosoma brucei gambiense type 1 populations from human patients are clonal and display geographical genetic differentiation. Infection
    • Morrison LJ, Tait A, McCormack G, Sweeney L, Black A, Truc P, Likeufack ACL, Turner CM, MacLeod A. 2008. Trypanosoma brucei gambiense type 1 populations from human patients are clonal and display geographical genetic differentiation. Infection, Genetics and Evolution 8:847–854. doi: 10.1016/j.meegid.2008.08.005.
    • (2008) Genetics and Evolution , vol.8 , pp. 847-854
    • Morrison, L.J.1    Tait, A.2    McCormack, G.3    Sweeney, L.4    Black, A.5    Truc, P.6    Likeufack, A.7    Turner, C.M.8    Macleod, A.9
  • 33
    • 0034007354 scopus 로고    scopus 로고
    • Architecture of the trypanosoma brucei nucleus during interphase and mitosis
    • Ogbadoyi E, Ersfeld K, Robinson D, Sherwin T, Gull K. 2000. Architecture of the trypanosoma brucei nucleus during interphase and mitosis. Chromosoma 108:501–513. doi: 10.1007/s004120050402.
    • (2000) Chromosoma , vol.108 , pp. 501-513
    • Ogbadoyi, E.1    Ersfeld, K.2    Robinson, D.3    Sherwin, T.4    Gull, K.5
  • 34
    • 0009416810 scopus 로고
    • The problem of the bantu expansion
    • Oliver R. 1966. The problem of the bantu expansion. The Journal of African History 7:361–376. doi: 10.1017/S0021853700006472.
    • (1966) The Journal of African History , vol.7 , pp. 361-376
    • Oliver, R.1
  • 36
    • 84892789668 scopus 로고    scopus 로고
    • Meiosis and haploid gametes in the pathogen trypanosoma brucei
    • Peacock L, Bailey M, Carrington M, Gibson W. 2014. Meiosis and haploid gametes in the pathogen trypanosoma brucei. Current Biology 24:181–186. doi: 10.1016/j.cub.2013.11.044.
    • (2014) Current Biology , vol.24 , pp. 181-186
    • Peacock, L.1    Bailey, M.2    Carrington, M.3    Gibson, W.4
  • 37
    • 84906536689 scopus 로고    scopus 로고
    • Reproductive clonality in protozoan pathogens-truth or artefact?
    • Ramírez JD, Llewellyn MS. 2014. Reproductive clonality in protozoan pathogens-truth or artefact? Molecular Ecology 23:4195–4202. doi: 10.1111/mec.12872.
    • (2014) Molecular Ecology , vol.23 , pp. 4195-4202
    • Jd, R.1    Llewellyn, M.S.2
  • 39
    • 79960157308 scopus 로고    scopus 로고
    • Molecular evidence for ancient asexuality in timema stick insects
    • Schwander T, Henry L, Crespi BJ. 2011. Molecular evidence for ancient asexuality in timema stick insects. Current Biology 21:1129–1134. doi: 10.1016/j.cub.2011.05.026.
    • (2011) Current Biology , vol.21 , pp. 1129-1134
    • Schwander, T.1    Henry, L.2    Crespi, B.J.3
  • 40
    • 84931347572 scopus 로고    scopus 로고
    • Allele sharing and evidence for sexuality in a mitochondrial clade of bdelloid rotifers
    • Signorovitch A, Hur J, Gladyshev E, Meselson M. 2015. Allele sharing and evidence for sexuality in a mitochondrial clade of bdelloid rotifers. Genetics 200:581–590. doi: 10.1534/genetics.115.176719.
    • (2015) Genetics , vol.200 , pp. 581-590
    • Signorovitch, A.1    Hur, J.2    Gladyshev, E.3    Meselson, M.4
  • 42
    • 84985947309 scopus 로고    scopus 로고
    • Comparative genomics reveals multiple genetic backgrounds of human pathogenicity in the trypanosoma brucei complex
    • Sistrom M, Evans B, Bjornson R, Gibson W, Balmer O, Maser P, Aksoy S, Caccone A. 2014. Comparative genomics reveals multiple genetic backgrounds of human pathogenicity in the trypanosoma brucei complex. Genome Biology and Evolution 6:2811–2819. doi: 10.1093/gbe/evu222.
    • (2014) Genome Biology and Evolution , vol.6 , pp. 2811-2819
    • Sistrom, M.1    Evans, B.2    Bjornson, R.3    Gibson, W.4    Balmer, O.5    Maser, P.6    Aksoy, S.7    Caccone, A.8
  • 43
    • 0023058145 scopus 로고
    • Evolution: Contemplating life without sex
    • Maynard Smith J. 1986. Evolution: Contemplating life without sex. Nature 324:300–301. doi: 10.1038/324300a0.
    • (1986) Nature , vol.324 , pp. 300-301
    • Maynard Smith, J.1
  • 44
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis A. 2014. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313. doi: 10.1093/bioinformatics/btu033.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 45
    • 84875634162 scopus 로고    scopus 로고
    • Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdottir H, Robinson JT, Mesirov JP. 2013. Integrative genomics viewer (iGV): High-performance genomics data visualization and exploration. Briefings in Bioinformatics 14:178–192. doi: 10.1093/bib/bbs017.
    • (2013) Briefings in Bioinformatics , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 46
    • 0025524298 scopus 로고
    • A clonal theory of parasitic protozoa: The population structures of entamoeba, giardia, leishmania, naegleria, plasmodium, trichomonas, and trypanosoma and their medical and taxonomical consequences
    • Tibayrenc M, Kjellberg F, Ayala FJ. 1990. A clonal theory of parasitic protozoa: the population structures of entamoeba, giardia, leishmania, naegleria, plasmodium, trichomonas, and trypanosoma and their medical and taxonomical consequences. Proceedings of the National Academy of Sciences of the United States of America 87:2414–2418. doi: 10.1073/pnas.87.7.2414.
    • (1990) Proceedings of the National Academy of Sciences of the United States of America , vol.87 , pp. 2414-2418
    • Tibayrenc, M.1    Kjellberg, F.2    Ayala, F.J.3
  • 47
    • 0036746010 scopus 로고    scopus 로고
    • The clonal theory of parasitic protozoa: 12 years on
    • Tibayrenc M, Ayala FJ. 2002. The clonal theory of parasitic protozoa: 12 years on. Trends in Parasitology 18:405–410. doi: 10.1016/S1471-4922(02)02357-7.
    • (2002) Trends in Parasitology , vol.18 , pp. 405-410
    • Tibayrenc, M.1    Ayala, F.J.2
  • 48
    • 84870362142 scopus 로고    scopus 로고
    • Reproductive clonality of pathogens: A perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa
    • Tibayrenc M, Ayala FJ. 2012. Reproductive clonality of pathogens: A perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proceedings of the National Academy of Sciences of the United States of America 109:E3305–E3313. doi: 10.1073/pnas.1212452109.
    • (2012) Proceedings of the National Academy of Sciences of the United States of America , vol.109
    • Tibayrenc, M.1    Ayala, F.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.