Haploview: Visualization and analysis of SNP genotype data

Cold Spring Harbor Protocols

Volumn 4, Issue 10, 2009, Pages

  Barrett, Jeffrey C ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR 7 LIKE 2;

ARTICLE; AUTOMATION; BIOINFORMATICS; DATA ANALYSIS SOFTWARE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENOTYPE; HAPLOTYPE MAP; HUMAN; INFORMATION RETRIEVAL; INHERITANCE; INTERNET; QUALITY CONTROL; RELIABILITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 70949106022     PISSN: None     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.ip71     Document Type: Article

References (9)

1. Altshuler D, Brooks LD, Chakravarti A, Collins FS, Daly MJ, Donnelly P. 2005. A haplotype map of the human genome. Nature 437: 1299-1320.
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3. Daly MJ, Rioux JD, Schaffner SF, Hudson TJ, Lander ES. 2001. High-resolution haplotype structure in the human genome. Nat Genet 29: 229-232.
4. de Bakker PIW. 2009. Selection and evaluation of tag-SNPs using Tagger and HapMap. Cold Spring Harb Protoc doi: 10.1101/pdb.ip67.
5. de Bakker PIW, Yelensky R, Pe'er I, Gabriel SB, Daly MJ, Altshuler D. 2005. Efficiency and power in genetic association studies. Nat Genet 37: 1217-1223.
6. Hinds DA, Stuve LL, Nilsen GB, Halperin E, Eskin E, Ballinger DG, Frazer KA, Cox DR. 2005. Whole-genome patterns of common DNA variation in three human populations. Science 307: 1072-1079.
7. Myers S, Bottolo L, Freeman C, McVean G, Donnelly P. 2005. A fine-scale map of recombination rates and hot spots across the human genome. Science 310: 321-324.
8. Phillips MS, Lawrence R, Sachidanandam R, Morris AP, Balding DJ, Donaldson MA, Studebaker JF, Ankener WM, Alfisi SV, Kuo FS, et al. 2003. Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat Genet 33: 382-387.
9. Qin ZS, Niu T, Liu JS. 2002. Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms. Am J Hum Genet 71: 1242-1247.