메뉴 건너뛰기




Volumn 14, Issue 8, 2004, Pages 1624-1632

Haplotype and missing data inference in nuclear families

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALLELE; ARTICLE; CHROMOSOME SEGREGATION; COMPUTER PROGRAM; COMPUTER SIMULATION; CONTROLLED STUDY; DATA ANALYSIS; FAMILY; FATHER; GENE LINKAGE DISEQUILIBRIUM; GENETIC ALGORITHM; GENOTYPE; HAPLOTYPE; HUMAN; MALE; MOTHER; PARENTAGE ANALYSIS; POPULATION GENETICS; PRIORITY JOURNAL; PROGENY; SIBLING; STATISTICAL MODEL;

EID: 4444319904     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.2204604     Document Type: Article
Times cited : (39)

References (43)
  • 1
    • 0035058585 scopus 로고    scopus 로고
    • Haplotypes vs. single marker linkage disequilibrium tests: What do we gain?
    • Akey, J., Jin, L., and Xiong, M. 2001. Haplotypes vs. single marker linkage disequilibrium tests: What do we gain? Eur. J. Hum. Genet. 9: 291-300.
    • (2001) Eur. J. Hum. Genet. , vol.9 , pp. 291-300
    • Akey, J.1    Jin, L.2    Xiong, M.3
  • 2
    • 0036445068 scopus 로고    scopus 로고
    • Efficiency of haplotype frequency estimation when nuclear family information is included
    • Becker, T. and Knapp, M. 2002. Efficiency of haplotype frequency estimation when nuclear family information is included. Hum. Hered. 54: 45-53.
    • (2002) Hum. Hered. , vol.54 , pp. 45-53
    • Becker, T.1    Knapp, M.2
  • 3
    • 0344033602 scopus 로고    scopus 로고
    • Detecting disease associations due to linkage disequilibrium using haplotype tags: A class of tests and the determinants of statistical power
    • Chapman, J.M., Cooper, J.D., Todd, J.A., and Clayton, D.G. 2003. Detecting disease associations due to linkage disequilibrium using haplotype tags: A class of tests and the determinants of statistical power. Hum. Hered. 56: 18-31.
    • (2003) Hum. Hered. , vol.56 , pp. 18-31
    • Chapman, J.M.1    Cooper, J.D.2    Todd, J.A.3    Clayton, D.G.4
  • 4
    • 0041707972 scopus 로고    scopus 로고
    • Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers
    • Cheng, R., Ma, J.Z., Wright, F.A., Lin, S., Gao, X., Wang, D., Elston, R.C., and Li, M.D. 2003. Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers. Genetics 164: 1175-1187.
    • (2003) Genetics , vol.164 , pp. 1175-1187
    • Cheng, R.1    Ma, J.Z.2    Wright, F.A.3    Lin, S.4    Gao, X.5    Wang, D.6    Elston, R.C.7    Li, M.D.8
  • 5
    • 0025269067 scopus 로고
    • Inference of haplotypes from PCR-amplified samples of diploid populations
    • Clark, A.G. 1990. Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7: 111-122.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 111-122
    • Clark, A.G.1
  • 6
    • 0030688004 scopus 로고    scopus 로고
    • Variations on a theme: Cataloging human DNA sequence variation
    • Collins, F.S., Guyer, M.S., and Charkravarti, A. 1997. Variations on a theme: Cataloging human DNA sequence variation. Science 278: 1580-1581.
    • (1997) Science , vol.278 , pp. 1580-1581
    • Collins, F.S.1    Guyer, M.S.2    Charkravarti, A.3
  • 7
    • 0032429154 scopus 로고    scopus 로고
    • A DNA polymorphism discovery resource for research on human genetic variation
    • Collins, F.S., Brooks, L.D., and Chakravarti, A. 1998. A DNA polymorphism discovery resource for research on human genetic variation. Genome Res. 8: 1229-1231.
    • (1998) Genome Res. , vol.8 , pp. 1229-1231
    • Collins, F.S.1    Brooks, L.D.2    Chakravarti, A.3
  • 10
    • 0034934775 scopus 로고    scopus 로고
    • Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies
    • Douglas, J.A., Boehnke, M., Gillanders, E., Trent, J.M., and Gruber, S.B. 2001. Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies. Nat. Genet. 28: 361-364.
    • (2001) Nat. Genet. , vol.28 , pp. 361-364
    • Douglas, J.A.1    Boehnke, M.2    Gillanders, E.3    Trent, J.M.4    Gruber, S.B.5
  • 11
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • Ewens, W.J. 1972. The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3: 87-112.
    • (1972) Theor. Popul. Biol. , vol.3 , pp. 87-112
    • Ewens, W.J.1
  • 13
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier, L. and Slatkin, M. 1995. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12: 921-927.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 14
    • 4444327033 scopus 로고    scopus 로고
    • Gametic phase estimation over large genomic regions using an adaptive window approach
    • Excoffier, L., Laval, G., and Baldin, D. 2003. Gametic phase estimation over large genomic regions using an adaptive window approach. Hum. Genom. 1: 7-19.
    • (2003) Hum. Genom. , vol.1 , pp. 7-19
    • Excoffier, L.1    Laval, G.2    Baldin, D.3
  • 16
    • 0023069772 scopus 로고
    • The sampling theory of neutral alleles and an urn model in population genetics
    • Hoppe, F.M. 1987. The sampling theory of neutral alleles and an urn model in population genetics. J. Math. Biol. 25: 123-159.
    • (1987) J. Math. Biol. , vol.25 , pp. 123-159
    • Hoppe, F.M.1
  • 17
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson, R.R. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 18
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R.R. and Kaplan, N.L. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 19
    • 0029886532 scopus 로고    scopus 로고
    • Parametric and nonparametric linkage analysis: A unified multipoint approach
    • Kruglyak, L., Daly, M.J., Reeve-Daly, M.P., and Lander, E.S. 1996. Parametric and nonparametric linkage analysis: A unified multipoint approach. Am. J. Hum. Genet. 58:1347-1363.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1347-1363
    • Kruglyak, L.1    Daly, M.J.2    Reeve-Daly, M.P.3    Lander, E.S.4
  • 20
    • 0029805706 scopus 로고    scopus 로고
    • The new genomics: Global views of biology
    • Lander, E.S. 1996. The new genomics: Global views of biology. Science 274: 536-539.
    • (1996) Science , vol.274 , pp. 536-539
    • Lander, E.S.1
  • 21
    • 0023796209 scopus 로고
    • On measures of gametic disequilibrium
    • Lewontin, R.C. 1988. On measures of gametic disequilibrium. Genetics 120: 849-852.
    • (1988) Genetics , vol.120 , pp. 849-852
    • Lewontin, R.C.1
  • 22
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
    • Li, N. and Stephens, M. 2003. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165: 2213-2233.
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 24
    • 0036792816 scopus 로고    scopus 로고
    • On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles
    • Morris, R.W. and Kaplan, N.L. 2002. On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles. Genet. Epidemiol. 23: 221-233.
    • (2002) Genet. Epidemiol. , vol.23 , pp. 221-233
    • Morris, R.W.1    Kaplan, N.L.2
  • 25
    • 0031588662 scopus 로고    scopus 로고
    • Genetic analysis of complex diseases
    • Muller-Myhsok, B. and Abel, L. 1997. Genetic analysis of complex diseases. Science 275: 1328-1329.
    • (1997) Science , vol.275 , pp. 1328-1329
    • Muller-Myhsok, B.1    Abel, L.2
  • 26
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • Niu, T., Qin, Z.S., Xu, X., and Liu, J.S. 2002. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Hum. Genet. 70: 157-169.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 27
    • 0029160586 scopus 로고
    • Monoallelic mutation analysis (MAMA) for identifying germline mutations
    • Papadopoulos, N., Leach, F.S., Kinzler, K.W., and Vogelstein, B. 1995. Monoallelic mutation analysis (MAMA) for identifying germline mutations. Nat. Genet. 11: 99-102.
    • (1995) Nat. Genet. , vol.11 , pp. 99-102
    • Papadopoulos, N.1    Leach, F.S.2    Kinzler, K.W.3    Vogelstein, B.4
  • 28
    • 0034969437 scopus 로고    scopus 로고
    • Are rare variants responsible for susceptibility to complex diseases?
    • Pritchard, J.K. 2001. Are rare variants responsible for susceptibility to complex diseases? Am. J. Hum. Genet. 69: 124-137.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 124-137
    • Pritchard, J.K.1
  • 29
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch, N. and Merikangas, K. 1996. The future of genetic studies of complex human diseases. Science 273: 1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 30
    • 0035065489 scopus 로고    scopus 로고
    • Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information
    • Rohde, K. and Fuerst, R. 2001. Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information. Hum. Mutat. 17: 289-295.
    • (2001) Hum. Mutat. , vol.17 , pp. 289-295
    • Rohde, K.1    Fuerst, R.2
  • 32
    • 0036858594 scopus 로고    scopus 로고
    • Relative efficiency of ambiguous vs. directly measured haplotype frequencies
    • Schaid, D.J. 2002. Relative efficiency of ambiguous vs. directly measured haplotype frequencies. Genet. Epidemiol. 23: 426-443.
    • (2002) Genet. Epidemiol. , vol.23 , pp. 426-443
    • Schaid, D.J.1
  • 33
    • 0036782136 scopus 로고    scopus 로고
    • Caution on pedigree haplotype inference with software that assumes linkage equilibrium
    • Schaid, D.J., McDonnell, S.K., Wang, L., Cunningham, J.M., and Thibodeau, S.N. 2002. Caution on pedigree haplotype inference with software that assumes linkage equilibrium. Am. J. Hum. Genet. 71: 992-995.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 992-995
    • Schaid, D.J.1    McDonnell, S.K.2    Wang, L.3    Cunningham, J.M.4    Thibodeau, S.N.5
  • 34
    • 0033969453 scopus 로고    scopus 로고
    • Effect of allelic heterogeneity on the power of the transmission disequilibrium test
    • Slager, S.L., Huang, J., and Vieland, V.J. 2000. Effect of allelic heterogeneity on the power of the transmission disequilibrium test. Genet. Epidemiol. 18: 143-156.
    • (2000) Genet. Epidemiol. , vol.18 , pp. 143-156
    • Slager, S.L.1    Huang, J.2    Vieland, V.J.3
  • 35
    • 0029945706 scopus 로고    scopus 로고
    • Descent graphs in pedigree analysis: Applications to haplotyping, location scores, and marker-sharing statistics
    • Sobel, E. and Lange, K. 1996. Descent graphs in pedigree analysis: Applications to haplotyping, location scores, and marker-sharing statistics. Am. J. Hum. Genet. 58: 1323-1337.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1323-1337
    • Sobel, E.1    Lange, K.2
  • 36
    • 0001886134 scopus 로고    scopus 로고
    • Haplotyping algorithms
    • (eds. T. Speed and M.S. Waterman), Springer-Verlag, New York
    • Sobel, E., Lange, K., O'Connel, J.R., and Weeks, D.E. 1996. Haplotyping algorithms. In Genetic mapping and DNA sequencing (eds. T. Speed and M.S. Waterman), pp. 89-110. Springer-Verlag, New York.
    • (1996) Genetic Mapping and DNA Sequencing , pp. 89-110
    • Sobel, E.1    Lange, K.2    O'Connel, J.R.3    Weeks, D.E.4
  • 37
    • 0027377799 scopus 로고
    • Transmission test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDM)
    • Spielman, R.S., McGinnis, R.E., and Ewens, W.J. 1993. Transmission test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am. J. Hum. Genet. 52: 506-516.
    • (1993) Am. J. Hum. Genet. , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 38
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • Stephens, M. and Donnelly, P. 2003. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73: 1162-1169.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 39
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens, M., Smith, N.J., and Donnelly, P. 2001. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 40
    • 0043267974 scopus 로고    scopus 로고
    • Haplotype blocks and linkage disequilibrium in the human genome
    • Wall, J.D. and Pritchard, J.K. 2003. Haplotype blocks and linkage disequilibrium in the human genome. Nat. Rev. Genet. 4: 587-597.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 587-597
    • Wall, J.D.1    Pritchard, J.K.2
  • 41
    • 0003086095 scopus 로고
    • Complete characterization of disequilibrium at two loci
    • (ed. M.W. Feldman), Princeton University Press, Princeton, NJ
    • Weir, B.S. and Cockerham, C.C. 1989. Complete characterization of disequilibrium at two loci. In Mathematical evolutionary theory (ed. M.W. Feldman), pp. 86-110. Princeton University Press, Princeton, NJ.
    • (1989) Mathematical Evolutionary Theory , pp. 86-110
    • Weir, B.S.1    Cockerham, C.C.2
  • 43
    • 4444331769 scopus 로고    scopus 로고
    • A genetic variation analysis of neuropsychiatric traits
    • CRC Press, Boca Raton, FL
    • Zwick, M.E., Cutler, D.J., and Chakravarti, A. 2001. A genetic variation analysis of neuropsychiatric traits. In Methods in genomic neuroscience, pp. 289-302. CRC Press, Boca Raton, FL.
    • (2001) Methods in Genomic Neuroscience , pp. 289-302
    • Zwick, M.E.1    Cutler, D.J.2    Chakravarti, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.