-
1
-
-
24644454339
-
Improved survival of follicular lymphoma patients in the United States
-
Swenson W.T., et al. Improved survival of follicular lymphoma patients in the United States. J. Clin. Oncol. 23, 5019-5026 (2005
-
(2005)
J. Clin. Oncol
, vol.23
, pp. 5019-5026
-
-
Swenson, W.T.1
-
2
-
-
84895815322
-
Integrated genomic analysis identifies recurrent mutations and evolution patterns driving the initiation and progression of follicular lymphoma
-
Okosun J., et al. Integrated genomic analysis identifies recurrent mutations and evolution patterns driving the initiation and progression of follicular lymphoma. Nat. Genet. 46, 176-181 (2014
-
(2014)
Nat. Genet
, vol.46
, pp. 176-181
-
-
Okosun, J.1
-
3
-
-
84892553514
-
Genetics of follicular lymphoma transformation
-
Pasqualucci L., et al. Genetics of follicular lymphoma transformation. Cell Reports 6, 130-140 (2014
-
(2014)
Cell Reports
, vol.6
, pp. 130-140
-
-
Pasqualucci, L.1
-
4
-
-
84925547095
-
Recurrent mutations of NOTCH genes in follicular lymphoma identify a distinctive subset of tumours
-
Karube K., et al. Recurrent mutations of NOTCH genes in follicular lymphoma identify a distinctive subset of tumours. J. Pathol. 234, 423-430 (2014
-
(2014)
J. Pathol
, vol.234
, pp. 423-430
-
-
Karube, K.1
-
5
-
-
84921464795
-
Activating STAT6 mutations in follicular lymphoma
-
Yildiz M., et al. Activating STAT6 mutations in follicular lymphoma. Blood 125, 668-679 (2015
-
(2015)
Blood
, vol.125
, pp. 668-679
-
-
Yildiz, M.1
-
6
-
-
75749124332
-
Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin
-
Morin R.D., et al. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nat. Genet. 42, 181-185 (2010
-
(2010)
Nat. Genet
, vol.42
, pp. 181-185
-
-
Morin, R.D.1
-
7
-
-
79952430906
-
Inactivating mutations of acetyltransferase genes in B-cell lymphoma
-
Pasqualucci L., et al. Inactivating mutations of acetyltransferase genes in B-cell lymphoma. Nature 471, 189-195 (2011
-
(2011)
Nature
, vol.471
, pp. 189-195
-
-
Pasqualucci, L.1
-
8
-
-
66649127621
-
Mutations of multiple genes cause deregulation of NF-?B in diffuse large B-cell lymphoma
-
Compagno M., et al. Mutations of multiple genes cause deregulation of NF-?B in diffuse large B-cell lymphoma. Nature 459, 717-721 (2009
-
(2009)
Nature
, vol.459
, pp. 717-721
-
-
Compagno, M.1
-
9
-
-
41149136296
-
Oncogenic CARD11 mutations in human diffuse large B cell lymphoma
-
Lenz G., et al. Oncogenic CARD11 mutations in human diffuse large B cell lymphoma. Science 319, 1676-1679 (2008
-
(2008)
Science
, vol.319
, pp. 1676-1679
-
-
Lenz, G.1
-
10
-
-
84857942952
-
Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing
-
Lohr J.G., et al. Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing. Proc. Natl. Acad. Sci. USA 109, 3879-3884 (2012
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 3879-3884
-
-
Lohr, J.G.1
-
11
-
-
79551686422
-
Oncogenically active MYD88 mutations in human lymphoma
-
Ngo V.N., et al. Oncogenically active MYD88 mutations in human lymphoma. Nature 470, 115-119 (2011
-
(2011)
Nature
, vol.470
, pp. 115-119
-
-
Ngo, V.N.1
-
12
-
-
80052029516
-
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
-
Morin R.D., et al. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature 476, 298-303 (2011
-
(2011)
Nature
, vol.476
, pp. 298-303
-
-
Morin, R.D.1
-
13
-
-
80052269038
-
Analysis of the coding genome of diffuse large B-cell lymphoma
-
Pasqualucci L., et al. Analysis of the coding genome of diffuse large B-cell lymphoma. Nat. Genet. 43, 830-837 (2011
-
(2011)
Nat. Genet
, vol.43
, pp. 830-837
-
-
Pasqualucci, L.1
-
14
-
-
84891603187
-
EZH2 mutations are frequent and represent an early event in follicular lymphoma
-
Bödör C., et al. EZH2 mutations are frequent and represent an early event in follicular lymphoma. Blood 122, 3165-3168 (2013
-
(2013)
Blood
, vol.122
, pp. 3165-3168
-
-
Bödör, C.1
-
15
-
-
84876460347
-
Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma
-
Green M.R., et al. Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma. Blood 121, 1604-1611 (2013
-
(2013)
Blood
, vol.121
, pp. 1604-1611
-
-
Green, M.R.1
-
16
-
-
84887285547
-
Landscape of somatic mutations and clonal evolution in mantle cell lymphoma
-
Be? S., et al. Landscape of somatic mutations and clonal evolution in mantle cell lymphoma. Proc. Natl. Acad. Sci. USA 110, 18250-18255 (2013
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 18250-18255
-
-
Be, S.1
-
17
-
-
84874102335
-
Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
-
Landau D.A., et al. Evolution and impact of subclonal mutations in chronic lymphocytic leukemia. Cell 152, 714-726 (2013
-
(2013)
Cell
, vol.152
, pp. 714-726
-
-
Landau, D.A.1
-
18
-
-
84892409192
-
Widespread genetic heterogeneity in multiple myeloma: Implications for targeted therapy
-
Lohr J.G., et al. Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy. Cancer Cell 25, 91-101 (2014
-
(2014)
Cancer Cell
, vol.25
, pp. 91-101
-
-
Lohr, J.G.1
-
19
-
-
84886290682
-
Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing
-
Morin R.D., et al. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood 122, 1256-1265 (2013
-
(2013)
Blood
, vol.122
, pp. 1256-1265
-
-
Morin, R.D.1
-
20
-
-
84867051939
-
Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics
-
Schmitz R., et al. Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics. Nature 490, 116-120 (2012
-
(2012)
Nature
, vol.490
, pp. 116-120
-
-
Schmitz, R.1
-
21
-
-
84875740314
-
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
-
Gao J., et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci. Signal. 6, pl1 (2013
-
(2013)
Sci. Signal
, vol.6
, pp. pl1
-
-
Gao, J.1
-
22
-
-
0032771639
-
Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p
-
Nakashima, N., Noguchi, E., & Nishimoto, T. Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 152, 853-867 (1999
-
(1999)
Genetics
, vol.152
, pp. 853-867
-
-
Nakashima, N.1
Noguchi, E.2
Nishimoto, T.3
-
23
-
-
0035831451
-
Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B
-
Sekiguchi, T., Hirose, E., Nakashima, N., Ii, M., & Nishimoto, T. Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J. Biol. Chem. 276, 7246-7257 (2001
-
(2001)
J. Biol. Chem
, vol.276
, pp. 7246-7257
-
-
Sekiguchi, T.1
Hirose, E.2
Nakashima, N.3
Ii, M.4
Nishimoto, T.5
-
24
-
-
48649085816
-
Regulation of TORC1 by Rag GTPases in nutrient response
-
Kim, E., Goraksha-Hicks, P., Li, L., Neufeld, T.P., & Guan, K.L. Regulation of TORC1 by Rag GTPases in nutrient response. Nat. Cell Biol. 10, 935-945 (2008
-
(2008)
Nat. Cell Biol
, vol.10
, pp. 935-945
-
-
Kim, E.1
Goraksha-Hicks, P.2
Li, L.3
Neufeld, T.P.4
Guan, K.L.5
-
25
-
-
45849105156
-
The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1
-
Sancak Y., et al. The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1. Science 320, 1496-1501 (2008
-
(2008)
Science
, vol.320
, pp. 1496-1501
-
-
Sancak, Y.1
-
26
-
-
84878357685
-
A tumor suppressor complex with GAP activity for the Rag GTPases that signal amino acid sufficiency to mTORC1
-
Bar-Peled L., et al A tumor suppressor complex with GAP activity for the Rag GTPases that signal amino acid sufficiency to mTORC1. Science 340, 1100-1106 (2013
-
(2013)
Science
, vol.340
, pp. 1100-1106
-
-
Bar-Peled, L.1
-
27
-
-
84866431363
-
Ragulator is a GEF for the Rag GTPases that signal amino acid levels to mTORC1
-
Bar-Peled, L., Schweitzer, L.D., Zoncu, R., & Sabatini, D.M. Ragulator is a GEF for the Rag GTPases that signal amino acid levels to mTORC1. Cell 150, 1196-1208 (2012
-
(2012)
Cell
, vol.150
, pp. 1196-1208
-
-
Bar-Peled, L.1
Schweitzer, L.D.2
Zoncu, R.3
Sabatini, D.M.4
-
28
-
-
77951768486
-
Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids
-
Sancak Y., et al. Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 141, 290-303 (2010
-
(2010)
Cell
, vol.141
, pp. 290-303
-
-
Sancak, Y.1
-
29
-
-
80555143078
-
MTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H+-ATPase
-
Zoncu R., et al. mTORC1 senses lysosomal amino acids through an inside-out mechanism that requires the vacuolar H+-ATPase. Science 334, 678-683 (2011
-
(2011)
Science
, vol.334
, pp. 678-683
-
-
Zoncu, R.1
-
30
-
-
84925777835
-
SLC38A9 is a component of the lysosomal amino acid sensing machinery that controls mTORC1
-
Rebsamen M., et al. SLC38A9 is a component of the lysosomal amino acid sensing machinery that controls mTORC1. Nature 519, 477-481 (2015
-
(2015)
Nature
, vol.519
, pp. 477-481
-
-
Rebsamen, M.1
-
31
-
-
84922743269
-
Metabolism Lysosomal amino acid transporter SLC38A9 signals arginine sufficiency to mTORC1
-
Wang S., et al. Metabolism. Lysosomal amino acid transporter SLC38A9 signals arginine sufficiency to mTORC1. Science 347, 188-194 (2015
-
(2015)
Science
, vol.347
, pp. 188-194
-
-
Wang, S.1
-
32
-
-
35448946098
-
Vacuolar ATPases: Rotary proton pumps in physiology and pathophysiology
-
Forgac, M. Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology. Nat. Rev. Mol. Cell Biol. 8, 917-929 (2007
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 917-929
-
-
Forgac, M.1
-
33
-
-
84860820531
-
Novel insights into V-ATPase functioning: Distinct roles for its accessory subunits ATP6AP1/Ac45 and ATP6AP2/(pro) renin receptor
-
Jansen, E.J., & Martens, G.J. Novel insights into V-ATPase functioning: distinct roles for its accessory subunits ATP6AP1/Ac45 and ATP6AP2/(pro) renin receptor. Curr. Protein Pept. Sci. 13, 124-133 (2012
-
(2012)
Curr. Protein Pept. Sci
, vol.13
, pp. 124-133
-
-
Jansen, E.J.1
Martens, G.J.2
-
34
-
-
84863045210
-
Roles of the mammalian target of rapamycin, mTOR, in controlling ribosome biogenesis and protein synthesis
-
Iadevaia, V., Huo, Y., Zhang, Z., Foster, L.J., & Proud, C.G. Roles of the mammalian target of rapamycin, mTOR, in controlling ribosome biogenesis and protein synthesis. Biochem. Soc. Trans. 40, 168-172 (2012
-
(2012)
Biochem. Soc. Trans
, vol.40
, pp. 168-172
-
-
Iadevaia, V.1
Huo, Y.2
Zhang, Z.3
Foster, L.J.4
Proud, C.G.5
-
35
-
-
84874995247
-
Stimulation of de novo pyrimidine synthesis by growth signaling through mTOR and S6K1
-
Ben-Sahra, I., Howell, J.J., Asara, J.M., & Manning, B.D. Stimulation of de novo pyrimidine synthesis by growth signaling through mTOR and S6K1. Science 339, 1323-1328 (2013
-
(2013)
Science
, vol.339
, pp. 1323-1328
-
-
Ben-Sahra, I.1
Howell, J.J.2
Asara, J.M.3
Manning, B.D.4
-
36
-
-
84888200442
-
The folliculin tumor suppressor is a GAP for the RagC/D GTPases that signal amino acid levels to mTORC1
-
Tsun Z.Y., et al. The folliculin tumor suppressor is a GAP for the RagC/D GTPases that signal amino acid levels to mTORC1. Mol. Cell 52, 495-505 (2013
-
(2013)
Mol. Cell
, vol.52
, pp. 495-505
-
-
Tsun, Z.Y.1
-
37
-
-
0023885845
-
Relationship among guanine nucleotide exchange, GTP hydrolysis, and transforming potential of mutated ras proteins
-
Feig, L.A., & Cooper, G.M. Relationship among guanine nucleotide exchange, GTP hydrolysis, and transforming potential of mutated ras proteins. Mol. Cell. Biol. 8, 2472-2478 (1988
-
(1988)
Mol. Cell. Biol
, vol.8
, pp. 2472-2478
-
-
Feig, L.A.1
Cooper, G.M.2
-
38
-
-
0003000807
-
Tools of the trade: Use of dominant-inhibitory mutants of Ras-family GTPases
-
Feig, L.A. Tools of the trade: use of dominant-inhibitory mutants of Ras-family GTPases. Nat. Cell Biol. 1, E25-E27 (1999
-
(1999)
Nat. Cell Biol
, vol.1
, pp. E25-E27
-
-
Feig, L.A.1
-
39
-
-
0027404091
-
Kinetic and structural analysis of the Mg2+-binding site of the guanine nucleotide-binding protein p21H-ras
-
John J., et al. Kinetic and structural analysis of the Mg2+-binding site of the guanine nucleotide-binding protein p21H-ras. J. Biol. Chem. 268, 923-929 (1993
-
(1993)
J. Biol. Chem
, vol.268
, pp. 923-929
-
-
John, J.1
-
40
-
-
0032486268
-
Amino acid sufficiency and mTOR regulate p70 S6 kinase and eIF-4E BP1 through a common effector mechanism
-
Hara K., et al. Amino acid sufficiency and mTOR regulate p70 S6 kinase and eIF-4E BP1 through a common effector mechanism. J. Biol. Chem. 273, 14484-14494 (1998
-
(1998)
J. Biol. Chem
, vol.273
, pp. 14484-14494
-
-
Hara, K.1
-
41
-
-
59049087460
-
Bidirectional transport of amino acids regulates mTOR and autophagy
-
Nicklin P., et al. Bidirectional transport of amino acids regulates mTOR and autophagy. Cell 136, 521-534 (2009
-
(2009)
Cell
, vol.136
, pp. 521-534
-
-
Nicklin, P.1
-
42
-
-
0028838419
-
Functional and structural interactions of the Rab5 D136N mutant with xanthine nucleotides
-
Hoffenberg S., et al. Functional and structural interactions of the Rab5 D136N mutant with xanthine nucleotides. Biochem. Biophys. Res. Commun. 215, 241-249 (1995
-
(1995)
Biochem. Biophys. Res. Commun
, vol.215
, pp. 241-249
-
-
Hoffenberg, S.1
-
43
-
-
0030046054
-
Biochemical and biological consequences of changing the specificity of p21ras from guanosine to xanthosine nucleotides
-
Schmidt G., et al. Biochemical and biological consequences of changing the specificity of p21ras from guanosine to xanthosine nucleotides. Oncogene 12, 87-96 (1996
-
(1996)
Oncogene
, vol.12
, pp. 87-96
-
-
Schmidt, G.1
-
44
-
-
0025940096
-
Dominant inhibitory mutations in the Mg2+-binding site of RasH prevent its activation by GTP
-
Farnsworth, C.L., & Feig, L.A. Dominant inhibitory mutations in the Mg2+-binding site of RasH prevent its activation by GTP. Mol. Cell. Biol. 11, 4822-4829 (1991
-
(1991)
Mol. Cell. Biol
, vol.11
, pp. 4822-4829
-
-
Farnsworth, C.L.1
Feig, L.A.2
-
45
-
-
0027502176
-
Influence of guanine nucleotides on complex formation between Ras and CDC25 proteins
-
Lai, C.C., Boguski, M., Broek, D., & Powers, S. Influence of guanine nucleotides on complex formation between Ras and CDC25 proteins. Mol. Cell. Biol. 13, 1345-1352 (1993
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 1345-1352
-
-
Lai, C.C.1
Boguski, M.2
Broek, D.3
Powers, S.4
-
46
-
-
0022587426
-
Guanine nucleotides, protein phosphorylation and the control of translation
-
Proud, C.S. Guanine nucleotides, protein phosphorylation and the control of translation. Trends Biochem. Sci. 11, 73-77 (1986
-
(1986)
Trends Biochem. Sci
, vol.11
, pp. 73-77
-
-
Proud, C.S.1
-
47
-
-
0025193871
-
Three-dimensional structures of H-ras p21 mutants: Molecular basis for their inability to function as signal switch molecules
-
Krengel U., et al. Three-dimensional structures of H-ras p21 mutants: molecular basis for their inability to function as signal switch molecules. Cell 62, 539-548 (1990
-
(1990)
Cell
, vol.62
, pp. 539-548
-
-
Krengel, U.1
-
48
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
49
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo M.A., et al A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011
-
(2011)
Nat. Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
50
-
-
84863229597
-
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt D.C., et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012
-
(2012)
Genome Res
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
-
51
-
-
84864454040
-
SNPnexus: A web server for functional annotation of novel and publicly known genetic variants (2012 update)
-
Dayem Ullah, A.Z., Lemoine, N.R., & Chelala, C. SNPnexus: a web server for functional annotation of novel and publicly known genetic variants (2012 update). Nucleic Acids Res. 40, W65-W70 (2012
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W65-W70
-
-
Dayem Ullah, A.Z.1
Lemoine, N.R.2
Chelala, C.3
-
52
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
53
-
-
78049248432
-
Allele-specific copy number analysis of tumors
-
Van Loo P., et al. Allele-specific copy number analysis of tumors. Proc. Natl. Acad. Sci. USA 107, 16910-16915 (2010
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 16910-16915
-
-
Van Loo, P.1
-
54
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., & Salzberg, S.L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
55
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
56
-
-
84896735766
-
Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law, C.W., Chen, Y., Shi, W., & Smyth, G.K. voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 15, R29 (2014
-
(2014)
Genome Biol
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
57
-
-
84926507971
-
Limma powers differential expression analyses for RNA-sequencing and microarray studies
-
Ritchie M.E., et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015
-
(2015)
Nucleic Acids Res
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
-
58
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A., et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
59
-
-
0029160083
-
A versatile vector for gene and oligonucleotide transfer into cells in culture and in vivo: Polyethylenimine
-
Boussif O., et al A versatile vector for gene and oligonucleotide transfer into cells in culture and in vivo: polyethylenimine. Proc. Natl. Acad. Sci. USA 92, 7297-7301 (1995
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 7297-7301
-
-
Boussif, O.1
|