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Volumn 6, Issue NOV, 2015, Pages

Biogenesis, function, and applications of virus-derived small RNAs in plants

Author keywords

AGOs; DCLs; Plant antiviral defense; RDRs; RNA silencing; Small RNAs; Virus derived small RNAs

Indexed keywords

ARGONAUTE PROTEIN; DICER; DNA DIRECTED RNA POLYMERASE; DOUBLE STRANDED RNA; HEAT SHOCK PROTEIN 90; PROTEIN P19; RNA DIRECTED RNA POLYMERASE; S PHASE KINASE ASSOCIATED PROTEIN; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; VIRUS DERIVED SMALL INTERFERING RNA;

EID: 84949753610     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.01237     Document Type: Review
Times cited : (125)

References (135)
  • 1
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
    • Addo-Quaye, C., Eshoo, T. W., Bartel, D. P., and Axtell, M. J. (2008). Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr. Biol. 18, 758-762. doi: 10.1016/j.cub.2008.04.042
    • (2008) Curr. Biol , vol.18 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.W.2    Bartel, D.P.3    Axtell, M.J.4
  • 2
    • 84941312448 scopus 로고    scopus 로고
    • Small RNA derived from the virulence modulating region of the potato spindle tuber viroid silences callose synthase genes of tomato plants
    • Adkar-Purushothama, C. R., Brosseau, C., Giguere, T., Sano, T., Moffett, P., and Perreault, J. P. (2015). Small RNA derived from the virulence modulating region of the potato spindle tuber viroid silences callose synthase genes of tomato plants. Plant Cell 27, 2178-2194. doi: 10.1105/tpc.15.00523
    • (2015) Plant Cell , vol.27 , pp. 2178-2194
    • Adkar-Purushothama, C.R.1    Brosseau, C.2    Giguere, T.3    Sano, T.4    Moffett, P.5    Perreault, J.P.6
  • 3
    • 0037123639 scopus 로고    scopus 로고
    • RNA-dependent RNA polymerases, viruses, and RNA silencing
    • Ahlquist, P. (2002). RNA-dependent RNA polymerases, viruses, and RNA silencing. Science 296, 1270-1273. doi: 10.1126/science.1069132
    • (2002) Science , vol.296 , pp. 1270-1273
    • Ahlquist, P.1
  • 4
    • 32644436065 scopus 로고    scopus 로고
    • Molecular characterization of geminivirus-derived small RNAs in different plant species
    • Akbergenov, R., Si-Ammour, A., Blevins, T., Amin, I., Kutter, C., Vanderschuren, H., et al. (2006). Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res. 34, 462-471. doi: 10.1093/nar/gkj447
    • (2006) Nucleic Acids Res , vol.34 , pp. 462-471
    • Akbergenov, R.1    Si-Ammour, A.2    Blevins, T.3    Amin, I.4    Kutter, C.5    Vanderschuren, H.6
  • 5
    • 84949856617 scopus 로고    scopus 로고
    • Different Dicer-like protein components required for intracellular and systemic antiviral silencing in Arabidopsis thaliana
    • Andika, I. B., Maruyama, K., Sun, L., Kondo, H., Tamada, T., and Suzuki, N. (2015). Different Dicer-like protein components required for intracellular and systemic antiviral silencing in Arabidopsis thaliana. Plant Signal. Behav. 10:e1039214. doi: 10.1080/15592324.2015.1039214
    • (2015) Plant Signal. Behav , vol.10
    • Andika, I.B.1    Maruyama, K.2    Sun, L.3    Kondo, H.4    Tamada, T.5    Suzuki, N.6
  • 7
    • 84877677064 scopus 로고    scopus 로고
    • Classification and comparison of small RNAs from plants
    • Axtell, M. J. (2013). Classification and comparison of small RNAs from plants. Annu. Rev. Plant Biol. 64, 137-159. doi: 10.1146/annurev-arplant-050312-120043
    • (2013) Annu. Rev. Plant Biol , vol.64 , pp. 137-159
    • Axtell, M.J.1
  • 8
    • 81755185962 scopus 로고    scopus 로고
    • Ultra-deep sequencing for the analysis of viral populations
    • Beerenwinkel, N., and Zagordi, O. (2011). Ultra-deep sequencing for the analysis of viral populations. Curr. Opin. Virol. 1, 413-418. doi: 10.1016/j.coviro.2011.07.008
    • (2011) Curr. Opin. Virol , vol.1 , pp. 413-418
    • Beerenwinkel, N.1    Zagordi, O.2
  • 9
    • 61449126060 scopus 로고    scopus 로고
    • Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
    • Ben Amor, B., Wirth, S., Merchan, F., Laporte, P., d'Aubenton-Carafa, Y., Hirsch, J., et al. (2009). Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res. 19, 57-69. doi: 10.1101/gr.080275.108
    • (2009) Genome Res , vol.19 , pp. 57-69
    • Ben Amor, B.1    Wirth, S.2    Merchan, F.3    Laporte, P.4    d'Aubenton-Carafa, Y.5    Hirsch, J.6
  • 11
    • 33746561720 scopus 로고    scopus 로고
    • An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs
    • Bouche, N., Lauressergues, D., Gasciolli, V., and Vaucheret, H. (2006). An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J. 25, 3347-3356. doi: 10.1038/sj.emboj.7601217
    • (2006) EMBO J , vol.25 , pp. 3347-3356
    • Bouche, N.1    Lauressergues, D.2    Gasciolli, V.3    Vaucheret, H.4
  • 12
    • 84936932937 scopus 로고    scopus 로고
    • Functional and genetic analysis identify a role for Arabidopsis ARGONAUTE5 in antiviral RNA silencing
    • Brosseau, C., and Moffett, P. (2015). Functional and genetic analysis identify a role for Arabidopsis ARGONAUTE5 in antiviral RNA silencing. Plant Cell 27, 1742-1754. doi: 10.1105/tpc.15.00264
    • (2015) Plant Cell , vol.27 , pp. 1742-1754
    • Brosseau, C.1    Moffett, P.2
  • 13
    • 0026811331 scopus 로고
    • DNA methylation inhibits propagation of tomato golden mosaic virus DNA in transfected protoplasts
    • Brough, C. L., Gardiner, W. E., Inamdar, N. M., Zhang, X. Y., Ehrlich, M., and Bisaro, D. M. (1992). DNA methylation inhibits propagation of tomato golden mosaic virus DNA in transfected protoplasts. Plant Mol. Biol. 18, 703-712. doi: 10.1007/BF00020012
    • (1992) Plant Mol. Biol , vol.18 , pp. 703-712
    • Brough, C.L.1    Gardiner, W.E.2    Inamdar, N.M.3    Zhang, X.Y.4    Ehrlich, M.5    Bisaro, D.M.6
  • 14
    • 84921685377 scopus 로고    scopus 로고
    • Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis
    • Cao, M., Du, P., Wang, X., Yu, Y. Q., Qiu, Y. H., Li, W., et al. (2014). Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 111, 14613-14618. doi: 10.1073/pnas.1407131111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 14613-14618
    • Cao, M.1    Du, P.2    Wang, X.3    Yu, Y.Q.4    Qiu, Y.H.5    Li, W.6
  • 15
    • 84937133748 scopus 로고    scopus 로고
    • Antiviral roles of plant ARGONAUTES
    • Carbonell, A., and Carrington, J. C. (2015). Antiviral roles of plant ARGONAUTES. Curr. Opin. Plant Biol. 27, 111-117. doi: 10.1016/j.pbi.2015.06.013
    • (2015) Curr. Opin. Plant Biol , vol.27 , pp. 111-117
    • Carbonell, A.1    Carrington, J.C.2
  • 16
    • 84868089450 scopus 로고    scopus 로고
    • Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants
    • Carbonell, A., Fahlgren, N., Garcia-Ruiz, H., Gilbert, K. B., Montgomery, T. A., Nguyen, T., et al. (2012). Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants. Plant Cell 24, 3613-3629. doi: 10.1105/tpc.112.099945
    • (2012) Plant Cell , vol.24 , pp. 3613-3629
    • Carbonell, A.1    Fahlgren, N.2    Garcia-Ruiz, H.3    Gilbert, K.B.4    Montgomery, T.A.5    Nguyen, T.6
  • 18
    • 84936939172 scopus 로고    scopus 로고
    • Ultra deep sequencing of a baculovirus population reveals widespread genomic variations
    • Chateigner, A., Bezier, A., Labrousse, C., Jiolle, D., Barbe, V., and Herniou, E. A. (2015). Ultra deep sequencing of a baculovirus population reveals widespread genomic variations. Viruses 7, 3625-3646. doi: 10.3390/v7072788
    • (2015) Viruses , vol.7 , pp. 3625-3646
    • Chateigner, A.1    Bezier, A.2    Labrousse, C.3    Jiolle, D.4    Barbe, V.5    Herniou, E.A.6
  • 19
    • 3142660458 scopus 로고    scopus 로고
    • Short interfering RNA accumulation correlates with host recovery in DNA virus-infected hosts, and gene silencing targets specific viral sequences
    • Chellappan, P., Vanitharani, R., Pita, J., and Fauquet, C. M. (2004). Short interfering RNA accumulation correlates with host recovery in DNA virus-infected hosts, and gene silencing targets specific viral sequences. J. Virol. 78, 7465-7477. doi: 10.1128/JVI.78.14.7465-7477.2004
    • (2004) J. Virol , vol.78 , pp. 7465-7477
    • Chellappan, P.1    Vanitharani, R.2    Pita, J.3    Fauquet, C.M.4
  • 20
    • 77956123589 scopus 로고    scopus 로고
    • Engineering pathogen resistance in crop plants: current trends and future prospects
    • Collinge, D. B., Jorgensen, H. J., Lund, O. S., and Lyngkjaer, M. F. (2010). Engineering pathogen resistance in crop plants: current trends and future prospects. Annu. Rev. Phytopathol. 48, 269-291. doi: 10.1146/annurev-phyto-073009-114430
    • (2010) Annu. Rev. Phytopathol , vol.48 , pp. 269-291
    • Collinge, D.B.1    Jorgensen, H.J.2    Lund, O.S.3    Lyngkjaer, M.F.4
  • 21
    • 84947582502 scopus 로고    scopus 로고
    • LayerCake: a tool for the visual comparison of viral deep sequencing data
    • Correll, M., Bailey, A. L., Sarikaya, A., O'Connor, D. H., and Gleicher, M. (2015). LayerCake: a tool for the visual comparison of viral deep sequencing data. Bioinformatics 31, 3522-3528. doi: 10.1093/bioinformatics/btv407
    • (2015) Bioinformatics , vol.31 , pp. 3522-3528
    • Correll, M.1    Bailey, A.L.2    Sarikaya, A.3    O'Connor, D.H.4    Gleicher, M.5
  • 22
    • 84934970798 scopus 로고    scopus 로고
    • Viral silencing suppressors: tools forged to fine-tune host-pathogen coexistence
    • Csorba, T., Kontra, L., and Burgyan, J. (2015). Viral silencing suppressors: tools forged to fine-tune host-pathogen coexistence. Virology 479-480, 85-103. doi: 10.1016/j.virol.2015.02.028
    • (2015) Virology , vol.479-480 , pp. 85-103
    • Csorba, T.1    Kontra, L.2    Burgyan, J.3
  • 24
    • 0034716924 scopus 로고    scopus 로고
    • An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus
    • Dalmay, T., Hamilton, A., Rudd, S., Angell, S., and Baulcombe, D. C. (2000). An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101, 543-553. doi: 10.1016/S0092-8674(00)80864-8
    • (2000) Cell , vol.101 , pp. 543-553
    • Dalmay, T.1    Hamilton, A.2    Rudd, S.3    Angell, S.4    Baulcombe, D.C.5
  • 25
    • 33745916446 scopus 로고    scopus 로고
    • Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense
    • Deleris, A., Gallego-Bartolome, J., Bao, J., Kasschau, K. D., Carrington, J. C., and Voinnet, O. (2006). Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313, 68-71. doi: 10.1126/science.1128214
    • (2006) Science , vol.313 , pp. 68-71
    • Deleris, A.1    Gallego-Bartolome, J.2    Bao, J.3    Kasschau, K.D.4    Carrington, J.C.5    Voinnet, O.6
  • 26
    • 34547600663 scopus 로고    scopus 로고
    • Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs
    • Diaz-Pendon, J. A., Li, F., Li, W. X., and Ding, S. W. (2007). Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 19, 2053-2063. doi: 10.1105/tpc.106.047449
    • (2007) Plant Cell , vol.19 , pp. 2053-2063
    • Diaz-Pendon, J.A.1    Li, F.2    Li, W.X.3    Ding, S.W.4
  • 27
    • 43949109593 scopus 로고    scopus 로고
    • Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs
    • Donaire, L., Barajas, D., Martinez-Garcia, B., Martinez-Priego, L., Pagan, I., and Llave, C. (2008). Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs. J. Virol. 82, 5167-5177. doi: 10.1128/JVI.00272-08
    • (2008) J. Virol , vol.82 , pp. 5167-5177
    • Donaire, L.1    Barajas, D.2    Martinez-Garcia, B.3    Martinez-Priego, L.4    Pagan, I.5    Llave, C.6
  • 28
    • 69849103740 scopus 로고    scopus 로고
    • Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
    • Donaire, L., Wang, Y., Gonzalez-Ibeas, D., Mayer, K. F., Aranda, M. A., and Llave, C. (2009). Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology 392, 203-214. doi: 10.1016/j.virol.2009.07.005
    • (2009) Virology , vol.392 , pp. 203-214
    • Donaire, L.1    Wang, Y.2    Gonzalez-Ibeas, D.3    Mayer, K.F.4    Aranda, M.A.5    Llave, C.6
  • 29
    • 0020060620 scopus 로고
    • Purification of a host-encoded RNA-dependent RNA polymerase from cowpea mosaic virus-infected cowpea leaves
    • Dorssers, L., Zabel, P., van der Meer, J., and van Kammen, A. (1982). Purification of a host-encoded RNA-dependent RNA polymerase from cowpea mosaic virus-infected cowpea leaves. Virology 116, 236-249. doi: 10.1016/0042-6822(82)90416-0
    • (1982) Virology , vol.116 , pp. 236-249
    • Dorssers, L.1    Zabel, P.2    van der Meer, J.3    van Kammen, A.4
  • 30
    • 80052339278 scopus 로고    scopus 로고
    • Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    • Du, P., Wu, J., Zhang, J., Zhao, S., Zheng, H., Gao, G., et al. (2011a). Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors. PLoS Pathog 7:e1002176. doi: 10.1371/journal.ppat.1002176
    • (2011) PLoS Pathog , vol.7
    • Du, P.1    Wu, J.2    Zhang, J.3    Zhao, S.4    Zheng, H.5    Gao, G.6
  • 31
    • 80052417279 scopus 로고    scopus 로고
    • p2 of rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor
    • Du, Z., Xiao, D., Wu, J., Jia, D., Yuan, Z., Liu, Y., et al. (2011b). p2 of rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor. Mol. Plant Pathol. 12, 808-814. doi: 10.1111/j.1364-3703.2011.00716.x
    • (2011) Mol. Plant Pathol , vol.12 , pp. 808-814
    • Du, Z.1    Xiao, D.2    Wu, J.3    Jia, D.4    Yuan, Z.5    Liu, Y.6
  • 32
    • 84055190762 scopus 로고    scopus 로고
    • Mutations in the antiviral RNAi defense pathway modify Brome mosaic virus RNA recombinant profiles
    • Dzianott, A., Sztuba-Solinska, J., and Bujarski, J. J. (2012). Mutations in the antiviral RNAi defense pathway modify Brome mosaic virus RNA recombinant profiles. Mol. Plant-Microbe Interact. 25, 97-106. doi: 10.1094/MPMI-05-11-0137
    • (2012) Mol. Plant-Microbe Interact , vol.25 , pp. 97-106
    • Dzianott, A.1    Sztuba-Solinska, J.2    Bujarski, J.J.3
  • 33
    • 80055092838 scopus 로고    scopus 로고
    • Binding of the cyclophilin 40 ortholog SQUINT to Hsp90 protein is required for SQUINT function in Arabidopsis
    • Earley, K. W., and Poethig, R. S. (2011). Binding of the cyclophilin 40 ortholog SQUINT to Hsp90 protein is required for SQUINT function in Arabidopsis. J. Biol. Chem. 286, 38184-38189. doi: 10.1074/jbc. M111.290130
    • (2011) J. Biol. Chem , vol.286 , pp. 38184-38189
    • Earley, K.W.1    Poethig, R.S.2
  • 34
    • 35348970326 scopus 로고    scopus 로고
    • Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components
    • El-Shami, M., Pontier, D., Lahmy, S., Braun, L., Picart, C., Vega, D., et al. (2007). Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev. 21, 2539-2544. doi: 10.1101/gad.451207
    • (2007) Genes Dev , vol.21 , pp. 2539-2544
    • El-Shami, M.1    Pontier, D.2    Lahmy, S.3    Braun, L.4    Picart, C.5    Vega, D.6
  • 35
    • 0027257865 scopus 로고
    • Cytosine methylation inhibits replication of African cassava mosaic virus by two distinct mechanisms
    • Ermak, G., Paszkowski, U., Wohlmuth, M., Mittelsten Scheid, O., and Paszkowski, J. (1993). Cytosine methylation inhibits replication of African cassava mosaic virus by two distinct mechanisms. Nucleic Acids Res. 21, 3445-3450. doi: 10.1093/nar/21.15.3445
    • (1993) Nucleic Acids Res , vol.21 , pp. 3445-3450
    • Ermak, G.1    Paszkowski, U.2    Wohlmuth, M.3    Mittelsten Scheid, O.4    Paszkowski, J.5
  • 36
    • 62049085784 scopus 로고    scopus 로고
    • dsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants
    • Fukunaga, R., and Doudna, J. A. (2009). dsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants. EMBO J. 28, 545-555. doi: 10.1038/emboj.2009.2
    • (2009) EMBO J , vol.28 , pp. 545-555
    • Fukunaga, R.1    Doudna, J.A.2
  • 37
    • 33750513190 scopus 로고    scopus 로고
    • RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway
    • Fusaro, A. F., Matthew, L., Smith, N. A., Curtin, S. J., Dedic-Hagan, J., Ellacott, G. A., et al. (2006). RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway. EMBO Rep. 7, 1168-1175. doi: 10.1038/sj.embor.7400837
    • (2006) EMBO Rep , vol.7 , pp. 1168-1175
    • Fusaro, A.F.1    Matthew, L.2    Smith, N.A.3    Curtin, S.J.4    Dedic-Hagan, J.5    Ellacott, G.A.6
  • 38
    • 84911402635 scopus 로고    scopus 로고
    • Application of RNA interference methodology to investigate and develop SCMV resistance in maize
    • Gan, D., Ding, F., Zhuang, D., Jiang, H., Jiang, T., Zhu, S., et al. (2014). Application of RNA interference methodology to investigate and develop SCMV resistance in maize. J. Genet. 93, 305-311. doi: 10.1007/s12041-014-0364-1
    • (2014) J. Genet , vol.93 , pp. 305-311
    • Gan, D.1    Ding, F.2    Zhuang, D.3    Jiang, H.4    Jiang, T.5    Zhu, S.6
  • 39
    • 84926484625 scopus 로고    scopus 로고
    • Roles and programming of Arabidopsis ARGONAUTE proteins during turnip mosaic virus infection
    • Garcia-Ruiz, H., Carbonell, A., Hoyer, J. S., Fahlgren, N., Gilbert, K. B., Takeda, A., et al. (2015). Roles and programming of Arabidopsis ARGONAUTE proteins during turnip mosaic virus infection. PLoS Pathog 11:e1004755. doi: 10.1371/journal.ppat.1004755
    • (2015) PLoS Pathog , vol.11
    • Garcia-Ruiz, H.1    Carbonell, A.2    Hoyer, J.S.3    Fahlgren, N.4    Gilbert, K.B.5    Takeda, A.6
  • 40
    • 77950367420 scopus 로고    scopus 로고
    • Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection
    • Garcia-Ruiz, H., Takeda, A., Chapman, E. J., Sullivan, C. M., Fahlgren, N., Brempelis, K. J., et al. (2010). Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell 22, 481-496. doi: 10.1105/tpc.109.073056
    • (2010) Plant Cell , vol.22 , pp. 481-496
    • Garcia-Ruiz, H.1    Takeda, A.2    Chapman, E.J.3    Sullivan, C.M.4    Fahlgren, N.5    Brempelis, K.J.6
  • 41
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
    • Gasciolli, V., Mallory, A. C., Bartel, D. P., and Vaucheret, H. (2005). Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr. Biol. 15, 1494-1500. doi: 10.1016/j.cub.2005.07.024
    • (2005) Curr. Biol , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.C.2    Bartel, D.P.3    Vaucheret, H.4
  • 42
    • 84898669569 scopus 로고    scopus 로고
    • Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1
    • Ghoshal, B., and Sanfaçon, H. (2014). Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1. Virology 456-457, 188-197. doi: 10.1016/j.virol.2014.03.026
    • (2014) Virology , vol.456-457 , pp. 188-197
    • Ghoshal, B.1    Sanfaçon, H.2
  • 43
    • 84879549702 scopus 로고    scopus 로고
    • The RYMV-encoded viral suppressor of RNA silencing P1 is a zinc-binding protein with redox-dependent flexibility
    • Gillet, F. X., Cattoni, D. I., Petiot-Becard, S., Delalande, F., Poignavent, V., Brizard, J. P., et al. (2013). The RYMV-encoded viral suppressor of RNA silencing P1 is a zinc-binding protein with redox-dependent flexibility. J. Mol. Biol. 425, 2423-2435. doi: 10.1016/j.jmb.2013.03.028
    • (2013) J. Mol. Biol , vol.425 , pp. 2423-2435
    • Gillet, F.X.1    Cattoni, D.I.2    Petiot-Becard, S.3    Delalande, F.4    Poignavent, V.5    Brizard, J.P.6
  • 44
    • 38349092676 scopus 로고    scopus 로고
    • Interaction with host SGS3 is required for suppression of RNA silencing by tomato yellow leaf curl virus V2 protein
    • Glick, E., Zrachya, A., Levy, Y., Mett, A., Gidoni, D., Belausov, E., et al. (2008). Interaction with host SGS3 is required for suppression of RNA silencing by tomato yellow leaf curl virus V2 protein. Proc. Natl. Acad. Sci. U.S.A. 105, 157-161. doi: 10.1073/pnas.0709036105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 157-161
    • Glick, E.1    Zrachya, A.2    Levy, Y.3    Mett, A.4    Gidoni, D.5    Belausov, E.6
  • 45
    • 34547688964 scopus 로고    scopus 로고
    • Characterization of silencing suppressor 2b of cucumber mosaic virus based on examination of its small RNA-binding abilities
    • Goto, K., Kobori, T., Kosaka, Y., Natsuaki, T., and Masuta, C. (2007). Characterization of silencing suppressor 2b of cucumber mosaic virus based on examination of its small RNA-binding abilities. Plant Cell Physiol. 48, 1050-1060. doi: 10.1093/pcp/pcm074
    • (2007) Plant Cell Physiol , vol.48 , pp. 1050-1060
    • Goto, K.1    Kobori, T.2    Kosaka, Y.3    Natsuaki, T.4    Masuta, C.5
  • 46
    • 84880079407 scopus 로고    scopus 로고
    • Rice yellow stunt rhabdovirus protein 6 suppresses systemic RNA silencing by blocking RDR6-mediated secondary siRNA synthesis
    • Guo, H., Song, X., Xie, C., Huo, Y., Zhang, F., Chen, X., et al. (2013). Rice yellow stunt rhabdovirus protein 6 suppresses systemic RNA silencing by blocking RDR6-mediated secondary siRNA synthesis. Mol. Plant-Microbe Interact. 26, 927-936. doi: 10.1094/MPMI-02-13-0040-R
    • (2013) Mol. Plant-Microbe Interact , vol.26 , pp. 927-936
    • Guo, H.1    Song, X.2    Xie, C.3    Huo, Y.4    Zhang, F.5    Chen, X.6
  • 47
    • 0033615491 scopus 로고    scopus 로고
    • A species of small antisense RNA in posttranscriptional gene silencing in plants
    • Hamilton, A. J., and Baulcombe, D. C. (1999). A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286, 950-952. doi: 10.1126/science.286.5441.950
    • (1999) Science , vol.286 , pp. 950-952
    • Hamilton, A.J.1    Baulcombe, D.C.2
  • 48
    • 84923487104 scopus 로고    scopus 로고
    • Small regulatory RNAs and the fine-tuning of plant-bacteria interactions
    • Harfouche, L., Haichar Fel, Z., and Achouak, W. (2015). Small regulatory RNAs and the fine-tuning of plant-bacteria interactions. New Phytol. 206, 98-106. doi: 10.1111/nph.13195
    • (2015) New Phytol , vol.206 , pp. 98-106
    • Harfouche, L.1    Haichar Fel, Z.2    Achouak, W.3
  • 50
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • Henderson, I. R., Zhang, X., Lu, C., Johnson, L., Meyers, B. C., Green, P. J., et al. (2006). Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet. 38, 721-725. doi: 10.1038/ng1804
    • (2006) Nat. Genet , vol.38 , pp. 721-725
    • Henderson, I.R.1    Zhang, X.2    Lu, C.3    Johnson, L.4    Meyers, B.C.5    Green, P.J.6
  • 51
    • 85018208631 scopus 로고    scopus 로고
    • OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus
    • Hong, W., Qian, D., Sun, R., Jiang, L., Wang, Y., Wei, C., et al. (2015). OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus. Sci. Rep. 5:11324. doi: 10.1038/srep11324
    • (2015) Sci. Rep , vol.5 , pp. 11324
    • Hong, W.1    Qian, D.2    Sun, R.3    Jiang, L.4    Wang, Y.5    Wei, C.6
  • 52
    • 79251537770 scopus 로고    scopus 로고
    • Virus-derived transgenes expressing hairpin RNA give immunity to Tobacco mosaic virus and Cucumber mosaic virus
    • Hu, Q., Niu, Y., Zhang, K., Liu, Y., and Zhou, X. (2011). Virus-derived transgenes expressing hairpin RNA give immunity to Tobacco mosaic virus and Cucumber mosaic virus. Virol. J. 8:41. doi: 10.1186/1743-422X-8-41
    • (2011) Virol. J , vol.8 , pp. 41
    • Hu, Q.1    Niu, Y.2    Zhang, K.3    Liu, Y.4    Zhou, X.5
  • 53
    • 84857195703 scopus 로고    scopus 로고
    • Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants
    • Iki, T., Yoshikawa, M., Meshi, T., and Ishikawa, M. (2012). Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants. EMBO J. 31, 267-278. doi: 10.1038/emboj.2011.395
    • (2012) EMBO J , vol.31 , pp. 267-278
    • Iki, T.1    Yoshikawa, M.2    Meshi, T.3    Ishikawa, M.4
  • 54
    • 77955479987 scopus 로고    scopus 로고
    • In vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90
    • Iki, T., Yoshikawa, M., Nishikiori, M., Jaudal, M. C., Matsumoto-Yokoyama, E., Mitsuhara, I., et al. (2010). In vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90. Mol. cell 39, 282-291. doi: 10.1016/j.molcel.2010.05.014
    • (2010) Mol. cell , vol.39 , pp. 282-291
    • Iki, T.1    Yoshikawa, M.2    Nishikiori, M.3    Jaudal, M.C.4    Matsumoto-Yokoyama, E.5    Mitsuhara, I.6
  • 55
    • 84936797457 scopus 로고    scopus 로고
    • Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum
    • Isakov, O., Borderia, A. V., Golan, D., Hamenahem, A., Celniker, G., Yoffe, L., et al. (2015). Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum. Bioinformatics 31, 2141-2150. doi: 10.1093/bioinformatics/btv101
    • (2015) Bioinformatics , vol.31 , pp. 2141-2150
    • Isakov, O.1    Borderia, A.V.2    Golan, D.3    Hamenahem, A.4    Celniker, G.5    Yoffe, L.6
  • 56
    • 84856554181 scopus 로고    scopus 로고
    • RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus
    • Jiang, L., Qian, D., Zheng, H., Meng, L. Y., Chen, J., Le, W. J., et al. (2012). RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus. Virus Res. 163, 512-519. doi: 10.1016/j.virusres.2011.11.016
    • (2012) Virus Res , vol.163 , pp. 512-519
    • Jiang, L.1    Qian, D.2    Zheng, H.3    Meng, L.Y.4    Chen, J.5    Le, W.J.6
  • 57
    • 84906223280 scopus 로고    scopus 로고
    • Tomato ringspot virus coat protein binds to ARGONAUTE 1 and suppresses the translation repression of a reporter gene
    • Karran, R. A., and Sanfacon, H. (2014). Tomato ringspot virus coat protein binds to ARGONAUTE 1 and suppresses the translation repression of a reporter gene. Mol. Plant-Microbe Interact. 27, 933-943. doi: 10.1094/MPMI-04-14-0099-R
    • (2014) Mol. Plant-Microbe Interact , vol.27 , pp. 933-943
    • Karran, R.A.1    Sanfacon, H.2
  • 58
    • 67349181684 scopus 로고    scopus 로고
    • Studies of a viral suppressor of RNA silencing p19-CFP fusion protein: a FRET-based probe for sensing double-stranded fluorophore tagged small RNAs
    • Koukiekolo, R., Jakubek, Z. J., Cheng, J., Sagan, S. M., and Pezacki, J. P. (2009). Studies of a viral suppressor of RNA silencing p19-CFP fusion protein: a FRET-based probe for sensing double-stranded fluorophore tagged small RNAs. Biophys. Chem. 143, 166-169. doi: 10.1016/j.bpc.2009.05.001
    • (2009) Biophys. Chem , vol.143 , pp. 166-169
    • Koukiekolo, R.1    Jakubek, Z.J.2    Cheng, J.3    Sagan, S.M.4    Pezacki, J.P.5
  • 59
    • 18744368470 scopus 로고    scopus 로고
    • Viral class 1 RNase III involved in suppression of RNA silencing
    • Kreuze, J. F., Savenkov, E. I., Cuellar, W., Li, X., and Valkonen, J. P. (2005). Viral class 1 RNase III involved in suppression of RNA silencing. J. Virol. 79, 7227-7238. doi: 10.1128/JVI.79.11.7227-7238.2005
    • (2005) J. Virol , vol.79 , pp. 7227-7238
    • Kreuze, J.F.1    Savenkov, E.I.2    Cuellar, W.3    Li, X.4    Valkonen, J.P.5
  • 60
    • 64049086954 scopus 로고    scopus 로고
    • SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies
    • Kumakura, N., Takeda, A., Fujioka, Y., Motose, H., Takano, R., and Watanabe, Y. (2009). SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies. FEBS Lett. 583, 1261-1266. doi: 10.1016/j.febslet.2009.03.055
    • (2009) FEBS Lett , vol.583 , pp. 1261-1266
    • Kumakura, N.1    Takeda, A.2    Fujioka, Y.3    Motose, H.4    Takano, R.5    Watanabe, Y.6
  • 61
    • 84928558252 scopus 로고    scopus 로고
    • Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population
    • Kutnjak, D., Rupar, M., Gutierrez-Aguirre, I., Curk, T., Kreuze, J. F., and Ravnikar, M. (2015). Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population. J. Virol. 89, 4760-4769. doi: 10.1128/JVI.03685-14
    • (2015) J. Virol , vol.89 , pp. 4760-4769
    • Kutnjak, D.1    Rupar, M.2    Gutierrez-Aguirre, I.3    Curk, T.4    Kreuze, J.F.5    Ravnikar, M.6
  • 62
    • 75749102212 scopus 로고    scopus 로고
    • The rice yellow mottle virus P1 protein exhibits dual functions to suppress and activate gene silencing
    • Lacombe, S., Bangratz, M., Vignols, F., and Brugidou, C. (2010). The rice yellow mottle virus P1 protein exhibits dual functions to suppress and activate gene silencing. Plant J. 61, 371-382. doi: 10.1111/j.1365-313X.2009.04062.x
    • (2010) Plant J , vol.61 , pp. 371-382
    • Lacombe, S.1    Bangratz, M.2    Vignols, F.3    Brugidou, C.4
  • 63
    • 84872413149 scopus 로고    scopus 로고
    • Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches
    • Li, Y. F., Zheng, Y., Jagadeeswaran, G., and Sunkar, R. (2013). Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches. Plant Sci. 203-204, 17-24. doi: 10.1016/j.plantsci.2012.12.014
    • (2013) Plant Sci , vol.203-204 , pp. 17-24
    • Li, Y.F.1    Zheng, Y.2    Jagadeeswaran, G.3    Sunkar, R.4
  • 64
    • 84942474023 scopus 로고    scopus 로고
    • Deep sequencing and analysis of small RNAs in sweet orange grafted on sour orange infected with two Citrus tristeza virus isolates prevalent in Sicily
    • Licciardello, G., Scuderi, G., Ferraro, R., Giampetruzzi, A., Russo, M., Lombardo, A., et al. (2015). Deep sequencing and analysis of small RNAs in sweet orange grafted on sour orange infected with two Citrus tristeza virus isolates prevalent in Sicily. Arch. Virol. 160, 2583-2589. doi: 10.1007/s00705-015-2516-x
    • (2015) Arch. Virol , vol.160 , pp. 2583-2589
    • Licciardello, G.1    Scuderi, G.2    Ferraro, R.3    Giampetruzzi, A.4    Russo, M.5    Lombardo, A.6
  • 65
    • 35748967300 scopus 로고    scopus 로고
    • Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development
    • Liu, B., Chen, Z., Song, X., Liu, C., Cui, X., Zhao, X., et al. (2007). Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell 19, 2705-2718. doi: 10.1105/tpc.107.052209
    • (2007) Plant Cell , vol.19 , pp. 2705-2718
    • Liu, B.1    Chen, Z.2    Song, X.3    Liu, C.4    Cui, X.5    Zhao, X.6
  • 66
    • 84923404318 scopus 로고    scopus 로고
    • Different roles for RNA silencing and RNA processing components in virus recovery and virus-induced gene silencing in plants
    • Ma, X., Nicole, M. C., Meteignier, L. V., Hong, N., Wang, G., and Moffett, P. (2015). Different roles for RNA silencing and RNA processing components in virus recovery and virus-induced gene silencing in plants. J. Exp. Bot. 66, 919-932. doi: 10.1093/jxb/eru447
    • (2015) J. Exp. Bot , vol.66 , pp. 919-932
    • Ma, X.1    Nicole, M.C.2    Meteignier, L.V.3    Hong, N.4    Wang, G.5    Moffett, P.6
  • 67
    • 67349155588 scopus 로고    scopus 로고
    • ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways
    • Mallory, A. C., and Vaucheret, H. (2009). ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways. EMBO Rep. 10, 521-526. doi: 10.1038/embor.2009.32
    • (2009) EMBO Rep , vol.10 , pp. 521-526
    • Mallory, A.C.1    Vaucheret, H.2
  • 68
    • 79551640033 scopus 로고    scopus 로고
    • Form, function, and regulation of ARGONAUTE proteins
    • Mallory, A., and Vaucheret, H. (2010). Form, function, and regulation of ARGONAUTE proteins. Plant Cell 22, 3879-3889. doi: 10.1105/tpc.110.080671
    • (2010) Plant Cell , vol.22 , pp. 3879-3889
    • Mallory, A.1    Vaucheret, H.2
  • 69
    • 33750283315 scopus 로고    scopus 로고
    • Engineering novel traits in plants through RNA interference
    • Mansoor, S., Amin, I., Hussain, M., Zafar, Y., and Briddon, R. W. (2006). Engineering novel traits in plants through RNA interference. Trends Plant Sci. 11, 559-565. doi: 10.1016/j.tplants.2006.09.010
    • (2006) Trends Plant Sci , vol.11 , pp. 559-565
    • Mansoor, S.1    Amin, I.2    Hussain, M.3    Zafar, Y.4    Briddon, R.W.5
  • 71
    • 84937152839 scopus 로고    scopus 로고
    • In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs
    • Martinez de Alba, A. E., Moreno, A. B., Gabriel, M., Mallory, A. C., Christ, A., Bounon, R., et al. (2015). In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs. Nucleic Acids Res. 43, 2902-2913. doi: 10.1093/nar/gkv119
    • (2015) Nucleic Acids Res , vol.43 , pp. 2902-2913
    • Martinez de Alba, A.E.1    Moreno, A.B.2    Gabriel, M.3    Mallory, A.C.4    Christ, A.5    Bounon, R.6
  • 72
    • 34247265509 scopus 로고    scopus 로고
    • A crucial function of SGT1 and HSP90 in inflammasome activity links mammalian and plant innate immune responses
    • Mayor, A., Martinon, F., De Smedt, T., Petrilli, V., and Tschopp, J. (2007). A crucial function of SGT1 and HSP90 in inflammasome activity links mammalian and plant innate immune responses. Nat. Immunol. 8, 497-503. doi: 10.1038/ni1459
    • (2007) Nat. Immunol , vol.8 , pp. 497-503
    • Mayor, A.1    Martinon, F.2    De Smedt, T.3    Petrilli, V.4    Tschopp, J.5
  • 73
    • 18744381842 scopus 로고    scopus 로고
    • Aureusvirus P14 is an efficient RNA silencing suppressor that binds double-stranded RNAs without size specificity
    • Merai, Z., Kerenyi, Z., Molnar, A., Barta, E., Valoczi, A., Bisztray, G., et al. (2005). Aureusvirus P14 is an efficient RNA silencing suppressor that binds double-stranded RNAs without size specificity. J. Virol. 79, 7217-7226. doi: 10.1128/JVI.79.11.7217-7226.2005
    • (2005) J. Virol , vol.79 , pp. 7217-7226
    • Merai, Z.1    Kerenyi, Z.2    Molnar, A.3    Barta, E.4    Valoczi, A.5    Bisztray, G.6
  • 74
    • 84870552067 scopus 로고    scopus 로고
    • Genome-wide identification of viral and host transcripts targeted by viral siRNAs in Vitis vinifera
    • Miozzi, L., Gambino, G., Burgyan, J., and Pantaleo, V. (2013). Genome-wide identification of viral and host transcripts targeted by viral siRNAs in Vitis vinifera. Mol. Plant Pathol. 14, 30-43. doi: 10.1111/j.1364-3703.2012.00828.x
    • (2013) Mol. Plant Pathol , vol.14 , pp. 30-43
    • Miozzi, L.1    Gambino, G.2    Burgyan, J.3    Pantaleo, V.4
  • 75
    • 33845864469 scopus 로고    scopus 로고
    • RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins
    • Moissiard, G., and Voinnet, O. (2006). RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins. Proc. Natl. Acad. Sci. U.S.A. 103, 19593-19598. doi: 10.1073/pnas.0604627103
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 19593-19598
    • Moissiard, G.1    Voinnet, O.2
  • 76
    • 19944370491 scopus 로고    scopus 로고
    • Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs
    • Molnar, A., Csorba, T., Lakatos, L., Varallyay, E., Lacomme, C., and Burgyan, J. (2005). Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs. J. Virol. 79, 7812-7818. doi: 10.1128/JVI.79.12.7812-7818.2005
    • (2005) J. Virol , vol.79 , pp. 7812-7818
    • Molnar, A.1    Csorba, T.2    Lakatos, L.3    Varallyay, E.4    Lacomme, C.5    Burgyan, J.6
  • 77
    • 0036009918 scopus 로고    scopus 로고
    • Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance
    • Morel, J. B., Godon, C., Mourrain, P., Beclin, C., Boutet, S., Feuerbach, F., et al. (2002). Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell 14, 629-639. doi: 10.1105/tpc.010358
    • (2002) Plant Cell , vol.14 , pp. 629-639
    • Morel, J.B.1    Godon, C.2    Mourrain, P.3    Beclin, C.4    Boutet, S.5    Feuerbach, F.6
  • 78
    • 0034716907 scopus 로고    scopus 로고
    • Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance
    • Mourrain, P., Beclin, C., Elmayan, T., Feuerbach, F., Godon, C., Morel, J. B., et al. (2000). Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101, 533-542. doi: 10.1016/S0092-8674(00)80863-6
    • (2000) Cell , vol.101 , pp. 533-542
    • Mourrain, P.1    Beclin, C.2    Elmayan, T.3    Feuerbach, F.4    Godon, C.5    Morel, J.B.6
  • 79
    • 84862223028 scopus 로고    scopus 로고
    • Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing
    • Navarro, B., Gisel, A., Rodio, M. E., Delgado, S., Flores, R., and Di Serio, F. (2012). Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing. Plant J. 70, 991-1003. doi: 10.1111/j.1365-313X.2012.04940.x
    • (2012) Plant J , vol.70 , pp. 991-1003
    • Navarro, B.1    Gisel, A.2    Rodio, M.E.3    Delgado, S.4    Flores, R.5    Di Serio, F.6
  • 80
    • 84979948939 scopus 로고    scopus 로고
    • Crop immunity against viruses: outcomes and future challenges
    • Nicaise, V. (2014). Crop immunity against viruses: outcomes and future challenges. Front. Plant Sci. 5:660. doi: 10.3389/fpls.2014.00660
    • (2014) Front. Plant Sci , vol.5 , pp. 660
    • Nicaise, V.1
  • 81
    • 35348889711 scopus 로고    scopus 로고
    • A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice
    • Nonomura, K., Morohoshi, A., Nakano, M., Eiguchi, M., Miyao, A., Hirochika, H., et al. (2007). A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell 19, 2583-2594. doi: 10.1105/tpc.107.053199
    • (2007) Plant Cell , vol.19 , pp. 2583-2594
    • Nonomura, K.1    Morohoshi, A.2    Nakano, M.3    Eiguchi, M.4    Miyao, A.5    Hirochika, H.6
  • 82
    • 84943617578 scopus 로고    scopus 로고
    • Transgenic down-regulation of ARGONAUTE2 expression in Nicotiana benthamiana interferes with several layers of antiviral defenses
    • Odokonyero, D., Mendoza, M. R., Alvarado, V. Y., Zhang, J., Wang, X., and Scholthof, H. B. (2015). Transgenic down-regulation of ARGONAUTE2 expression in Nicotiana benthamiana interferes with several layers of antiviral defenses. Virology 486, 209-218. doi: 10.1016/j.virol.2015.09.008
    • (2015) Virology , vol.486 , pp. 209-218
    • Odokonyero, D.1    Mendoza, M.R.2    Alvarado, V.Y.3    Zhang, J.4    Wang, X.5    Scholthof, H.B.6
  • 83
    • 84911366383 scopus 로고    scopus 로고
    • Analysis of the evolution and structure of a complex intrahost viral population in chronic hepatitis C virus mapped by ultradeep pyrosequencing
    • Palmer, B. A., Dimitrova, Z., Skums, P., Crosbie, O., Kenny-Walsh, E., and Fanning, L. J. (2014). Analysis of the evolution and structure of a complex intrahost viral population in chronic hepatitis C virus mapped by ultradeep pyrosequencing. J. Virol. 88, 13709-13721. doi: 10.1128/JVI.01732-14
    • (2014) J. Virol , vol.88 , pp. 13709-13721
    • Palmer, B.A.1    Dimitrova, Z.2    Skums, P.3    Crosbie, O.4    Kenny-Walsh, E.5    Fanning, L.J.6
  • 84
    • 84863470339 scopus 로고    scopus 로고
    • Suppression of NS3 and MP is important for the stable inheritance of RNAi-mediated rice stripe virus (RSV) resistance obtained by targeting the fully complementary RSV-CP gene
    • Park, H. M., Choi, M. S., Kwak, D. Y., Lee, B. C., Lee, J. H., Kim, M. K., et al. (2012). Suppression of NS3 and MP is important for the stable inheritance of RNAi-mediated rice stripe virus (RSV) resistance obtained by targeting the fully complementary RSV-CP gene. Mol. Cells 33, 43-51. doi: 10.1007/s10059-012-2185-5
    • (2012) Mol. Cells , vol.33 , pp. 43-51
    • Park, H.M.1    Choi, M.S.2    Kwak, D.Y.3    Lee, B.C.4    Lee, J.H.5    Kim, M.K.6
  • 85
    • 84928238976 scopus 로고    scopus 로고
    • Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population
    • Pirovano, W., Miozzi, L., Boetzer, M., and Pantaleo, V. (2014). Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population. Front. Microbiol. 5:790. doi: 10.3389/fmicb.2014.00790
    • (2014) Front. Microbiol , vol.5 , pp. 790
    • Pirovano, W.1    Miozzi, L.2    Boetzer, M.3    Pantaleo, V.4
  • 86
    • 84874525489 scopus 로고    scopus 로고
    • Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures
    • Poulsen, C., Vaucheret, H., and Brodersen, P. (2013). Lessons on RNA silencing mechanisms in plants from eukaryotic argonaute structures. Plant Cell 25, 22-37. doi: 10.1105/tpc.112.105643
    • (2013) Plant Cell , vol.25 , pp. 22-37
    • Poulsen, C.1    Vaucheret, H.2    Brodersen, P.3
  • 88
    • 63449094751 scopus 로고    scopus 로고
    • Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis
    • Qi, X., Bao, F. S., and Xie, Z. (2009). Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis. PLoS ONE 4:e4971. doi: 10.1371/journal.pone.0004971
    • (2009) PLoS ONE , vol.4
    • Qi, X.1    Bao, F.S.2    Xie, Z.3
  • 89
    • 0037213290 scopus 로고    scopus 로고
    • The coat protein of turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation step
    • Qu, F., Ren, T., and Morris, T. J. (2003). The coat protein of turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation step. J. Virol. 77, 511-522. doi: 10.1128/JVI.77.1.511-522.2003
    • (2003) J. Virol , vol.77 , pp. 511-522
    • Qu, F.1    Ren, T.2    Morris, T.J.3
  • 90
    • 55749088651 scopus 로고    scopus 로고
    • Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1
    • Qu, F., Ye, X., and Morris, T. J. (2008). Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1. Proc. Natl. Acad. Sci. U.S.A. 105, 14732-14737. doi: 10.1073/pnas.0805760105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 14732-14737
    • Qu, F.1    Ye, X.2    Morris, T.J.3
  • 91
    • 84896727170 scopus 로고    scopus 로고
    • Arabidopsis double-stranded RNA binding protein DRB3 participates in methylation-mediated defense against geminiviruses
    • Raja, P., Jackel, J. N., Li, S., Heard, I. M., and Bisaro, D. M. (2014). Arabidopsis double-stranded RNA binding protein DRB3 participates in methylation-mediated defense against geminiviruses. J. Virol. 88, 2611-2622. doi: 10.1128/JVI.02305-13
    • (2014) J. Virol , vol.88 , pp. 2611-2622
    • Raja, P.1    Jackel, J.N.2    Li, S.3    Heard, I.M.4    Bisaro, D.M.5
  • 92
    • 50949121524 scopus 로고    scopus 로고
    • Viral genome methylation as an epigenetic defense against geminiviruses
    • Raja, P., Sanville, B. C., Buchmann, R. C., and Bisaro, D. M. (2008). Viral genome methylation as an epigenetic defense against geminiviruses. J. Virol. 82, 8997-9007. doi: 10.1128/JVI.00719-08
    • (2008) J. Virol , vol.82 , pp. 8997-9007
    • Raja, P.1    Sanville, B.C.2    Buchmann, R.C.3    Bisaro, D.M.4
  • 93
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan, R., Vaucheret, H., Trejo, J., and Bartel, D. P. (2006). A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 20, 3407-3425. doi: 10.1101/gad.1476406
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 94
    • 78649432027 scopus 로고    scopus 로고
    • Multiple functions of Rice dwarf phytoreovirus Pns10 in suppressing systemic RNA silencing
    • Ren, B., Guo, Y., Gao, F., Zhou, P., Wu, F., Meng, Z., et al. (2010). Multiple functions of Rice dwarf phytoreovirus Pns10 in suppressing systemic RNA silencing. J. Virol. 84, 12914-12923. doi: 10.1128/JVI.00864-10
    • (2010) J. Virol , vol.84 , pp. 12914-12923
    • Ren, B.1    Guo, Y.2    Gao, F.3    Zhou, P.4    Wu, F.5    Meng, Z.6
  • 95
    • 0017847773 scopus 로고
    • RNA-dependent RNA polymerases in uninfected and tobacco mosaic virus-infected tabacco leaves: viral induced stimulation of a host polymerase activity
    • Romaine, C. P., and Zaitlin, M. (1978). RNA-dependent RNA polymerases in uninfected and tobacco mosaic virus-infected tabacco leaves: viral induced stimulation of a host polymerase activity. Virology 86, 241-253. doi: 10.1016/0042-6822(78)90024-7
    • (1978) Virology , vol.86 , pp. 241-253
    • Romaine, C.P.1    Zaitlin, M.2
  • 96
    • 79952697621 scopus 로고    scopus 로고
    • Citrus tristeza virus infection induces the accumulation of viral small RNAs (21-24-nt) mapping preferentially at the 3'-terminal region of the genomic RNA and affects the host small RNA profile
    • Ruiz-Ruiz, S., Navarro, B., Gisel, A., Pena, L., Navarro, L., Moreno, P., et al. (2011). Citrus tristeza virus infection induces the accumulation of viral small RNAs (21-24-nt) mapping preferentially at the 3'-terminal region of the genomic RNA and affects the host small RNA profile. Plant Mol. Biol. 75, 607-619. doi: 10.1007/s11103-011-9754-4
    • (2011) Plant Mol. Biol , vol.75 , pp. 607-619
    • Ruiz-Ruiz, S.1    Navarro, B.2    Gisel, A.3    Pena, L.4    Navarro, L.5    Moreno, P.6
  • 98
    • 84877273509 scopus 로고    scopus 로고
    • AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system
    • Schuck, J., Gursinsky, T., Pantaleo, V., Burgyan, J., and Behrens, S. E. (2013). AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system. Nucleic Acids Res. 41, 5090-5103. doi: 10.1093/nar/gkt193
    • (2013) Nucleic Acids Res , vol.41 , pp. 5090-5103
    • Schuck, J.1    Gursinsky, T.2    Pantaleo, V.3    Burgyan, J.4    Behrens, S.E.5
  • 99
    • 26944466621 scopus 로고    scopus 로고
    • An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal
    • Schwach, F., Vaistij, F. E., Jones, L., and Baulcombe, D. C. (2005). An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol. 138, 1842-1852. doi: 10.1104/pp.105.063537
    • (2005) Plant Physiol , vol.138 , pp. 1842-1852
    • Schwach, F.1    Vaistij, F.E.2    Jones, L.3    Baulcombe, D.C.4
  • 100
    • 84895746307 scopus 로고    scopus 로고
    • De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs
    • Seguin, J., Rajeswaran, R., Malpica-Lopez, N., Martin, R. R., Kasschau, K., Dolja, V. V., et al. (2014). De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs. PLoS ONE 9:e88513. doi: 10.1371/journal.pone.0088513
    • (2014) PLoS ONE , vol.9
    • Seguin, J.1    Rajeswaran, R.2    Malpica-Lopez, N.3    Martin, R.R.4    Kasschau, K.5    Dolja, V.V.6
  • 101
    • 84863398326 scopus 로고    scopus 로고
    • Hairpin RNA derived from the gene for Pns9, a viroplasm matrix protein of Rice gall dwarf virus, confers strong resistance to virus infection in transgenic rice plants
    • Shimizu, T., Nakazono-Nagaoka, E., Akita, F., Wei, T., Sasaya, T., Omura, T., et al. (2012). Hairpin RNA derived from the gene for Pns9, a viroplasm matrix protein of Rice gall dwarf virus, confers strong resistance to virus infection in transgenic rice plants. J. Biotechnol. 157, 421-427. doi: 10.1016/j.jbiotec.2011.12.015
    • (2012) J. Biotechnol , vol.157 , pp. 421-427
    • Shimizu, T.1    Nakazono-Nagaoka, E.2    Akita, F.3    Wei, T.4    Sasaya, T.5    Omura, T.6
  • 102
    • 84877912740 scopus 로고    scopus 로고
    • Strong resistance against Rice grassy stunt virus is induced in transgenic rice plants expressing double-stranded RNA of the viral genes for nucleocapsid or movement proteins as targets for RNA interference
    • Shimizu, T., Ogamino, T., Hiraguri, A., Nakazono-Nagaoka, E., Uehara-Ichiki, T., Nakajima, M., et al. (2013). Strong resistance against Rice grassy stunt virus is induced in transgenic rice plants expressing double-stranded RNA of the viral genes for nucleocapsid or movement proteins as targets for RNA interference. Phytopathology 103, 513-519. doi: 10.1094/PHYTO-07-12-0165-R
    • (2013) Phytopathology , vol.103 , pp. 513-519
    • Shimizu, T.1    Ogamino, T.2    Hiraguri, A.3    Nakazono-Nagaoka, E.4    Uehara-Ichiki, T.5    Nakajima, M.6
  • 103
    • 57649171916 scopus 로고    scopus 로고
    • Silencing by RNAi of the gene for Pns12, a viroplasm matrix protein of Rice dwarf virus, results in strong resistance of transgenic rice plants to the virus
    • Shimizu, T., Yoshii, M., Wei, T., Hirochika, H., and Omura, T. (2009). Silencing by RNAi of the gene for Pns12, a viroplasm matrix protein of Rice dwarf virus, results in strong resistance of transgenic rice plants to the virus. Plant Biotechnol. J. 7, 24-32. doi: 10.1111/j.1467-7652.2008.00366.x
    • (2009) Plant Biotechnol. J , vol.7 , pp. 24-32
    • Shimizu, T.1    Yoshii, M.2    Wei, T.3    Hirochika, H.4    Omura, T.5
  • 104
    • 79958045463 scopus 로고    scopus 로고
    • A viral satellite RNA induces yellow symptoms on tobacco by targeting a gene involved in chlorophyll biosynthesis using the RNA silencing machinery
    • Shimura, H., Pantaleo, V., Ishihara, T., Myojo, N., Inaba, J., Sueda, K., et al. (2011). A viral satellite RNA induces yellow symptoms on tobacco by targeting a gene involved in chlorophyll biosynthesis using the RNA silencing machinery. PLoS Pathog 7:e1002021. doi: 10.1371/journal.ppat.1002021
    • (2011) PLoS Pathog , vol.7
    • Shimura, H.1    Pantaleo, V.2    Ishihara, T.3    Myojo, N.4    Inaba, J.5    Sueda, K.6
  • 105
    • 33144478111 scopus 로고    scopus 로고
    • MicroRNA-guided processing impairs Plum pox virus replication, but the virus readily evolves to escape this silencing mechanism
    • Simon-Mateo, C., and Garcia, J. A. (2006). MicroRNA-guided processing impairs Plum pox virus replication, but the virus readily evolves to escape this silencing mechanism. J. Virol. 80, 2429-2436. doi: 10.1128/JVI.80.5.2429-2436.2006
    • (2006) J. Virol , vol.80 , pp. 2429-2436
    • Simon-Mateo, C.1    Garcia, J.A.2
  • 106
    • 84929001549 scopus 로고    scopus 로고
    • Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling
    • Skums, P., Artyomenko, A., Glebova, O., Ramachandran, S., Mandoiu, I., Campo, D. S., et al. (2015). Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinformatics 31, 682-690. doi: 10.1093/bioinformatics/btu726
    • (2015) Bioinformatics , vol.31 , pp. 682-690
    • Skums, P.1    Artyomenko, A.2    Glebova, O.3    Ramachandran, S.4    Mandoiu, I.5    Campo, D.S.6
  • 107
    • 84901047975 scopus 로고    scopus 로고
    • Plant virus metagenomics: what we know and why we need to know more
    • Stobbe, A. H., and Roossinck, M. J. (2014). Plant virus metagenomics: what we know and why we need to know more. Front. Plant Sci. 5:150. doi: 10.3389/fpls.2014.00150
    • (2014) Front. Plant Sci , vol.5 , pp. 150
    • Stobbe, A.H.1    Roossinck, M.J.2
  • 108
    • 84880750229 scopus 로고    scopus 로고
    • RNA interference-mediated intrinsic antiviral immunity in plants
    • Szittya, G., and Burgyan, J. (2013). RNA interference-mediated intrinsic antiviral immunity in plants. Curr. Top. Microbiol. Immunol. 371, 153-181. doi: 10.1007/978-3-642-37765-5_6
    • (2013) Curr. Top. Microbiol. Immunol , vol.371 , pp. 153-181
    • Szittya, G.1    Burgyan, J.2
  • 110
    • 74549217236 scopus 로고    scopus 로고
    • Knock-down of OsDCL2 in rice negatively affects maintenance of the endogenous dsRNA virus, Oryza sativa endornavirus
    • Urayama, S., Moriyama, H., Aoki, N., Nakazawa, Y., Okada, R., Kiyota, E., et al. (2010). Knock-down of OsDCL2 in rice negatively affects maintenance of the endogenous dsRNA virus, Oryza sativa endornavirus. Plant Cell Physiol. 51, 58-67. doi: 10.1093/pcp/pcp167
    • (2010) Plant Cell Physiol , vol.51 , pp. 58-67
    • Urayama, S.1    Moriyama, H.2    Aoki, N.3    Nakazawa, Y.4    Okada, R.5    Kiyota, E.6
  • 111
    • 14744277976 scopus 로고    scopus 로고
    • Geminiviruses and RNA silencing
    • Vanitharani, R., Chellappan, P., and Fauquet, C. M. (2005). Geminiviruses and RNA silencing. Trends Plant Sci. 10, 144-151. doi: 10.1016/j.tplants.2005.01.005
    • (2005) Trends Plant Sci , vol.10 , pp. 144-151
    • Vanitharani, R.1    Chellappan, P.2    Fauquet, C.M.3
  • 112
    • 46149088681 scopus 로고    scopus 로고
    • Plant ARGONAUTES
    • Vaucheret, H. (2008). Plant ARGONAUTES. Trends Plant Sci. 13, 350-358. doi: 10.1016/j.tplants.2008.04.007
    • (2008) Trends Plant Sci , vol.13 , pp. 350-358
    • Vaucheret, H.1
  • 113
    • 84928225279 scopus 로고    scopus 로고
    • ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering
    • Verbist, B., Clement, L., Reumers, J., Thys, K., Vapirev, A., Talloen, W., et al. (2015). ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering. BMC Bioinformatics 16:59. doi: 10.1186/s12859-015-0458-7
    • (2015) BMC Bioinformatics , vol.16 , pp. 59
    • Verbist, B.1    Clement, L.2    Reumers, J.3    Thys, K.4    Vapirev, A.5    Talloen, W.6
  • 114
    • 84903671080 scopus 로고    scopus 로고
    • High-throughput sequencing reveals small RNAs involved in ASGV infection
    • Visser, M., Maree, H. J., Rees, D. J., and Burger, J. T. (2014). High-throughput sequencing reveals small RNAs involved in ASGV infection. BMC Genomics 15:568. doi: 10.1186/1471-2164-15-568
    • (2014) BMC Genomics , vol.15 , pp. 568
    • Visser, M.1    Maree, H.J.2    Rees, D.J.3    Burger, J.T.4
  • 115
    • 84885150249 scopus 로고    scopus 로고
    • Identification of a new enamovirus associated with citrus vein enation disease by deep sequencing of small RNAs
    • Vives, M. C., Velazquez, K., Pina, J. A., Moreno, P., Guerri, J., and Navarro, L. (2013). Identification of a new enamovirus associated with citrus vein enation disease by deep sequencing of small RNAs. Phytopathology 103, 1077-1086. doi: 10.1094/PHYTO-03-13-0068-R
    • (2013) Phytopathology , vol.103 , pp. 1077-1086
    • Vives, M.C.1    Velazquez, K.2    Pina, J.A.3    Moreno, P.4    Guerri, J.5    Navarro, L.6
  • 116
    • 46149095029 scopus 로고    scopus 로고
    • Use, tolerance and avoidance of amplified RNA silencing by plants
    • Voinnet, O. (2008). Use, tolerance and avoidance of amplified RNA silencing by plants. Trends Plant Sci. 13, 317-328. doi: 10.1016/j.tplants.2008.05.004
    • (2008) Trends Plant Sci , vol.13 , pp. 317-328
    • Voinnet, O.1
  • 117
    • 19944380791 scopus 로고    scopus 로고
    • Adenosine kinase inhibition and suppression of RNA silencing by geminivirus AL2 and L2 proteins
    • Wang, H., Buckley, K. J., Yang, X., Buchmann, R. C., and Bisaro, D. M. (2005). Adenosine kinase inhibition and suppression of RNA silencing by geminivirus AL2 and L2 proteins. J. Virol. 79, 7410-7418. doi: 10.1128/JVI.79.12.7410-7418.2005
    • (2005) J. Virol , vol.79 , pp. 7410-7418
    • Wang, H.1    Buckley, K.J.2    Yang, X.3    Buchmann, R.C.4    Bisaro, D.M.5
  • 118
    • 0346234414 scopus 로고    scopus 로고
    • Adenosine kinase is inactivated by geminivirus AL2 and L2 proteins
    • Wang, H., Hao, L., Shung, C. Y., Sunter, G., and Bisaro, D. M. (2003). Adenosine kinase is inactivated by geminivirus AL2 and L2 proteins. Plant Cell 15, 3020-3032. doi: 10.1105/tpc.015180
    • (2003) Plant Cell , vol.15 , pp. 3020-3032
    • Wang, H.1    Hao, L.2    Shung, C.Y.3    Sunter, G.4    Bisaro, D.M.5
  • 119
    • 79957761869 scopus 로고    scopus 로고
    • The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana
    • Wang, X. B., Jovel, J., Udomporn, P., Wang, Y., Wu, Q., Li, W. X., et al. (2011). The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 23, 1625-1638. doi: 10.1105/tpc.110.082305
    • (2011) Plant Cell , vol.23 , pp. 1625-1638
    • Wang, X.B.1    Jovel, J.2    Udomporn, P.3    Wang, Y.4    Wu, Q.5    Li, W.X.6
  • 120
    • 76249093088 scopus 로고    scopus 로고
    • RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana
    • Wang, X. B., Wu, Q., Ito, T., Cillo, F., Li, W. X., Chen, X., et al. (2010). RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 107, 484-489. doi: 10.1073/pnas.0904086107
    • (2010) Proc. Natl. Acad. Sci. U.S.A , vol.107 , pp. 484-489
    • Wang, X.B.1    Wu, Q.2    Ito, T.3    Cillo, F.4    Li, W.X.5    Chen, X.6
  • 121
    • 84932630904 scopus 로고    scopus 로고
    • Small RNAs-the secret agents in the plant-pathogen interactions
    • Weiberg, A., and Jin, H. (2015). Small RNAs-the secret agents in the plant-pathogen interactions. Curr. Opin. Plant Biol. 26, 87-94. doi: 10.1016/j.pbi.2015.05.033
    • (2015) Curr. Opin. Plant Biol , vol.26 , pp. 87-94
    • Weiberg, A.1    Jin, H.2
  • 122
    • 77749336545 scopus 로고    scopus 로고
    • Analysis of an autoproteolytic activity of rice yellow mottle virus silencing suppressor P1
    • Weinheimer, I., Boonrod, K., Moser, M., Zwiebel, M., Fullgrabe, M., Krczal, G., et al. (2010). Analysis of an autoproteolytic activity of rice yellow mottle virus silencing suppressor P1. Biol. Chem. 391, 271-281. doi: 10.1515/BC.2010.022
    • (2010) Biol. Chem , vol.391 , pp. 271-281
    • Weinheimer, I.1    Boonrod, K.2    Moser, M.3    Zwiebel, M.4    Fullgrabe, M.5    Krczal, G.6
  • 123
    • 84938689250 scopus 로고    scopus 로고
    • Suppress to survive-implication of plant viruses in PTGS
    • Wieczorek, P., and Obrepalska-Steplowska, A. (2015). Suppress to survive-implication of plant viruses in PTGS. Plant Mol. Biol. Rep. 33, 335-346. doi: 10.1007/s11105-014-0755-8
    • (2015) Plant Mol. Biol. Rep , vol.33 , pp. 335-346
    • Wieczorek, P.1    Obrepalska-Steplowska, A.2
  • 124
    • 84964694489 scopus 로고    scopus 로고
    • Viral-inducible argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA
    • Wu, J., Yang, Z., Wang, Y., Zheng, L., Ye, R., Ji, Y., et al. (2015). Viral-inducible argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. Elife 17:4. doi: 10.7554/eLife.05733
    • (2015) Elife , vol.17 , pp. 4
    • Wu, J.1    Yang, Z.2    Wang, Y.3    Zheng, L.4    Ye, R.5    Ji, Y.6
  • 125
    • 84925227777 scopus 로고    scopus 로고
    • microRNA biogenesis, degradation and activity in plants
    • Xie, M., Zhang, S., and Yu, B. (2015). microRNA biogenesis, degradation and activity in plants. Cell. Mol. Life Sci. 72, 87-99. doi: 10.1007/s00018-014-1728-7
    • (2015) Cell. Mol. Life Sci , vol.72 , pp. 87-99
    • Xie, M.1    Zhang, S.2    Yu, B.3
  • 126
    • 0035932952 scopus 로고    scopus 로고
    • An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defense
    • Xie, Z., Fan, B., Chen, C., and Chen, Z. (2001). An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defense. Proc. Natl. Acad. Sci. U.S.A. 98, 6516-6521. doi: 10.1073/pnas.111440998
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 6516-6521
    • Xie, Z.1    Fan, B.2    Chen, C.3    Chen, Z.4
  • 127
    • 19344374219 scopus 로고    scopus 로고
    • Genetic and functional diversification of small RNA pathways in plants
    • Xie, Z., Johansen, L. K., Gustafson, A. M., Kasschau, K. D., Lellis, A. D., Zilberman, D., et al. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2:E104. doi: 10.1371/journal.pbio.0020104
    • (2004) PLoS Biol , vol.2 , pp. E104
    • Xie, Z.1    Johansen, L.K.2    Gustafson, A.M.3    Kasschau, K.D.4    Lellis, A.D.5    Zilberman, D.6
  • 128
    • 63749087829 scopus 로고    scopus 로고
    • Characterization and subcellular localization of an RNA silencing suppressor encoded by Rice stripe tenuivirus
    • Xiong, R., Wu, J., Zhou, Y., and Zhou, X. (2009). Characterization and subcellular localization of an RNA silencing suppressor encoded by Rice stripe tenuivirus. Virology 387, 29-40. doi: 10.1016/j.virol.2009.01.045
    • (2009) Virology , vol.387 , pp. 29-40
    • Xiong, R.1    Wu, J.2    Zhou, Y.3    Zhou, X.4
  • 129
    • 84866997200 scopus 로고    scopus 로고
    • Population diversity of rice stripe virus-derived siRNAs in three different hosts and RNAi-based antiviral immunity in Laodelphgax striatellus
    • Xu, Y., Huang, L., Fu, S., Wu, J., and Zhou, X. (2012). Population diversity of rice stripe virus-derived siRNAs in three different hosts and RNAi-based antiviral immunity in Laodelphgax striatellus. PLoS ONE 7:e46238. doi: 10.1371/journal.pone.0046238
    • (2012) PLoS ONE , vol.7
    • Xu, Y.1    Huang, L.2    Fu, S.3    Wu, J.4    Zhou, X.5
  • 130
    • 84874937956 scopus 로고    scopus 로고
    • C2-mediated decrease in DNA methylation, accumulation of siRNAs, and increase in expression for genes involved in defense pathways in plants infected with beet severe curly top virus
    • Yang, L. P., Fang, Y. Y., An, C. P., Dong, L., Zhang, Z. H., Chen, H., et al. (2013). C2-mediated decrease in DNA methylation, accumulation of siRNAs, and increase in expression for genes involved in defense pathways in plants infected with beet severe curly top virus. Plant J. 73, 910-917. doi: 10.1111/tpj.12081
    • (2013) Plant J , vol.73 , pp. 910-917
    • Yang, L.P.1    Fang, Y.Y.2    An, C.P.3    Dong, L.4    Zhang, Z.H.5    Chen, H.6
  • 131
    • 84862908617 scopus 로고    scopus 로고
    • Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis
    • Yang, L., Wu, G., and Poethig, R. S. (2012). Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 109, 315-320. doi: 10.1073/pnas.1114673109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 315-320
    • Yang, L.1    Wu, G.2    Poethig, R.S.3
  • 132
    • 84928247573 scopus 로고    scopus 로고
    • MicroRNA: a new target for improving plant tolerance to abiotic stress
    • Zhang, B. (2015). MicroRNA: a new target for improving plant tolerance to abiotic stress. J. Exp. Bot. 66, 1749-1761. doi: 10.1093/jxb/erv013
    • (2015) J. Exp. Bot , vol.66 , pp. 1749-1761
    • Zhang, B.1
  • 133
    • 84864011442 scopus 로고    scopus 로고
    • Temperature-dependent survival of Turnip crinkle virus-infected arabidopsis plants relies on an RNA silencing-based defense that requires dcl2, AGO2, and HEN1
    • Zhang, X., Zhang, X., Singh, J., Li, D., and Qu, F. (2012). Temperature-dependent survival of Turnip crinkle virus-infected arabidopsis plants relies on an RNA silencing-based defense that requires dcl2, AGO2, and HEN1. J. Virol. 86, 6847-6854. doi: 10.1128/JVI.00497-12
    • (2012) J. Virol , vol.86 , pp. 6847-6854
    • Zhang, X.1    Zhang, X.2    Singh, J.3    Li, D.4    Qu, F.5
  • 134
    • 84863421468 scopus 로고    scopus 로고
    • Satellite RNA-derived small interfering RNA satsiR-12 targeting the 3' untranslated region of Cucumber mosaic virus triggers viral RNAs for degradation
    • Zhu, H., Duan, C. G., Hou, W. N., Du, Q. S., Lv, D. Q., Fang, R. X., et al. (2011). Satellite RNA-derived small interfering RNA satsiR-12 targeting the 3' untranslated region of Cucumber mosaic virus triggers viral RNAs for degradation. J. Virol. 85, 13384-13397. doi: 10.1128/JVI.05806-11
    • (2011) J. Virol , vol.85 , pp. 13384-13397
    • Zhu, H.1    Duan, C.G.2    Hou, W.N.3    Du, Q.S.4    Lv, D.Q.5    Fang, R.X.6
  • 135
    • 69549127823 scopus 로고    scopus 로고
    • Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups
    • Zong, J., Yao, X., Yin, J., Zhang, D., and Ma, H. (2009). Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups. Gene 447, 29-39. doi: 10.1016/j.gene.2009.07.004
    • (2009) Gene , vol.447 , pp. 29-39
    • Zong, J.1    Yao, X.2    Yin, J.3    Zhang, D.4    Ma, H.5


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