메뉴 건너뛰기




Volumn 27, Issue 8, 2015, Pages 2178-2194

Small RNA derived from the virulence modulating region of the potato spindle tuber viroid silences callose synthase genes of tomato plants

Author keywords

[No Author keywords available]

Indexed keywords

1,3-BETA-GLUCAN SYNTHASE; CALLOSE; GLUCAN; GLUCOSYLTRANSFERASE; ISOENZYME; MESSENGER RNA; MICRORNA; PLANT PROTEIN; VIRUS RNA;

EID: 84941312448     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.15.00523     Document Type: Article
Times cited : (112)

References (39)
  • 1
    • 84921789980 scopus 로고    scopus 로고
    • Analysis and application of viroid-specificsmall RNAs generatedby viroid-inducing RNA silencing
    • Adkar-Purushothama, C.R., Zhang, Z., Li, S., and Sano, T. (2015). Analysis and application of viroid-specificsmall RNAs generatedby viroid-inducing RNA silencing. Methods Mol. Biol. 1236: 135-170.
    • (2015) Methods Mol. Biol , vol.1236 , pp. 135-170
    • Adkar-Purushothama, C.R.1    Zhang, Z.2    Li, S.3    Sano, T.4
  • 2
    • 0042622372 scopus 로고    scopus 로고
    • RNAsoft: A suite of RNA secondary structure prediction and design software tools
    • Andronescu, M., Aguirre-Hernández, R., Condon, A., and Hoos, H.H. (2003). RNAsoft: A suite of RNA secondary structure prediction and design software tools. Nucleic Acids Res. 31: 3416-3422.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3416-3422
    • Andronescu, M.1    Aguirre-Hernández, R.2    Condon, A.3    Hoos, H.H.4
  • 4
    • 77649154330 scopus 로고    scopus 로고
    • In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection
    • Bolduc, F., Hoareau, C., St-Pierre, P., and Perreault, J.-P. (2010). In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection. BMC Mol. Biol. 11: 16.
    • (2010) BMC Mol. Biol , vol.11 , pp. 16
    • Bolduc, F.1    Hoareau, C.2    St-Pierre, P.3    Perreault, J.-P.4
  • 6
    • 67650113046 scopus 로고    scopus 로고
    • Callose synthesis in higher plants
    • Chen, X.Y., and Kim, J.Y. (2009). Callose synthesis in higher plants. Plant Signal. Behav. 4: 489-492.
    • (2009) Plant Signal. Behav , vol.4 , pp. 489-492
    • Chen, X.Y.1    Kim, J.Y.2
  • 8
    • 70350220614 scopus 로고    scopus 로고
    • The biology of viroid-host interactions
    • Ding, B. (2009). The biology of viroid-host interactions. Annu. Rev. Phytopathol. 47: 105-131.
    • (2009) Annu. Rev. Phytopathol , vol.47 , pp. 105-131
    • Ding, B.1
  • 9
    • 0031260005 scopus 로고    scopus 로고
    • Cell-to-cell movement of potato spindle tuber viroid
    • Ding, B., Kwon, M.O., Hammond, R and Owens, R. (1997). Cell-to-cell movement of potato spindle tuber viroid. Plant J. 12: 931-936.
    • (1997) Plant J , vol.12 , pp. 931-936
    • Ding, B.1    Kwon, M.O.2    Hammond, R.3    Owens, R.4
  • 10
    • 77956170809 scopus 로고    scopus 로고
    • RNA-based antiviral immunity. Nat
    • Ding, S.W. (2010). RNA-based antiviral immunity. Nat. Rev. Immunol. 10: 632-644.
    • (2010) Rev. Immunol , vol.10 , pp. 632-644
    • Ding, S.W.1
  • 12
    • 84892475118 scopus 로고    scopus 로고
    • In Nicotiana species, an artificial microRNA corresponding to the virulence modulating region of Potato spindle tuber viroid directs RNA silencing of a soluble inorganic pyro-phosphatase gene and the development of abnormal phenotypes
    • Eamens, A.L., Smith, N.A., Dennis, E.S., Wassenegger, M., and Wang, M. (2014). In Nicotiana species, an artificial microRNA corresponding to the virulence modulating region of Potato spindle tuber viroid directs RNA silencing of a soluble inorganic pyro-phosphatase gene and the development of abnormal phenotypes. Virology 450 451: 266-277.
    • (2014) Virology , vol.450-451 , pp. 266-277
    • Eamens, A.L.1    Smith, N.A.2    Dennis, E.S.3    Wassenegger, M.4    Wang, M.5
  • 13
    • 23744492958 scopus 로고    scopus 로고
    • Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility
    • Enns, L.C., Kanaoka, M.M., Torii, K.U., Comai, L., Okada, K and Cleland, R.E. (2005). Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility. Plant Mol. Biol. 58: 333-349.
    • (2005) Plant Mol. Biol , vol.58 , pp. 333-349
    • Enns, L.C.1    Kanaoka, M.M.2    Torii, K.U.3    Comai, L.4    Okada, K.5    Cleland, R.E.6
  • 14
    • 84902477967 scopus 로고    scopus 로고
    • Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae
    • Giguére, T., Adkar-Purushothama, C.R., and Perreault, J.-P. (2014). Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae. PLoS One 9: e98655.
    • (2014) Plos One , vol.9
    • Giguére, T.1    Adkar-Purushothama, C.R.2    Perreault, J.-P.3
  • 15
    • 0037009520 scopus 로고    scopus 로고
    • Two classes of short interfering RNA in RNA silencing
    • Hamilton, A., Voinnet, O., Chappell, L., and Baulcombe, D. (2002). Two classes of short interfering RNA in RNA silencing. EMBO J. 21:4671-4679.
    • (2002) EMBO J , vol.21 , pp. 4671-4679
    • Hamilton, A.1    Voinnet, O.2    Chappell, L.3    Baulcombe, D.4
  • 16
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • Hellemans, J., Mortier, G., De Paepe, A., Speleman, F., and Vandesompele, J. (2007). qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 8: 19.
    • (2007) Genome Biol , vol.8 , pp. 19
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5
  • 17
    • 78751477191 scopus 로고    scopus 로고
    • Gene silencing by micro-RNAs: Contributions of translational repression and mRNA decay
    • Huntzinger, E., and Izaurralde, E. (2011). Gene silencing by micro-RNAs: contributions of translational repression and mRNA decay. Nat. Rev. Genet. 12: 99-110.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 99-110
    • Huntzinger, E.1    Izaurralde, E.2
  • 20
    • 0022344804 scopus 로고
    • Domains in viroids: Evidence of intermolecular RNA rearrangements and their contribution to viroid evolution
    • Keese, P., and Symons, R.H. (1985). Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution. Proc. Natl. Acad. Sci. USA 82: 4582-4586.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 4582-4586
    • Keese, P.1    Symons, R.H.2
  • 21
    • 84859723090 scopus 로고    scopus 로고
    • Callose deposition at plasmodesmata is a critical factor in restricting the cell-to-cell movement of Soybean mosaic virus
    • Li, W., Zhao, Y., Liu, C., Yao, G., Wu, S., Hou, C., Zhang, M and Wang, D. (2012). Callose deposition at plasmodesmata is a critical factor in restricting the cell-to-cell movement of Soybean mosaic virus. Plant Cell Rep. 31: 905-916.
    • (2012) Plant Cell Rep , vol.31 , pp. 905-916
    • Li, W.1    Zhao, Y.2    Liu, C.3    Yao, G.4    Wu, S.5    Hou, C.6    Zhang, M.7    Wang, D.8
  • 22
    • 49149104481 scopus 로고    scopus 로고
    • Elimination of hop latent viroid upon developmental activation of pollen nucleases
    • Matousek, J., Orctová, L., Skopek, J., Pesina, K., and Steger, G. (2008). Elimination of hop latent viroid upon developmental activation of pollen nucleases. Biol. Chem. 389: 905-918.
    • (2008) Biol. Chem , vol.389 , pp. 905-918
    • Matousek, J.1    Orctová, L.2    Skopek, J.3    Pesina, K.4    Steger, G.5
  • 23
    • 79960451010 scopus 로고    scopus 로고
    • Distribution of tomato chlorotic dwarf viroid in floral organs of tomato
    • Matsushita, Y., Usugi, R., and Tsuda, S. (2011). Distribution of tomato chlorotic dwarf viroid in floral organs of tomato. Eur.J.Plant Pathol. 130: 441-447.
    • (2011) Eur.J.Plant Pathol , vol.130 , pp. 441-447
    • Matsushita, Y.1    Usugi, R.2    Tsuda, S.3
  • 24
    • 84941303690 scopus 로고    scopus 로고
    • Viroid RNA turnover: Characterization of the subgenomic RNAs of potato spindle tuber viroid accumulating in infected tissues provides insights into decay pathways operating in vivo
    • Minoia, S., Navarro, B., Delgado, S., Serio, F.D and Flores, R. (2015). Viroid RNA turnover: characterization of the subgenomic RNAs of potato spindle tuber viroid accumulating in infected tissues provides insights into decay pathways operating in vivo. Nucleic Acids Res. 43: 2313-2325.
    • (2015) Nucleic Acids Res , vol.43 , pp. 2313-2325
    • Minoia, S.1    Navarro, B.2    Delgado, S.3    Serio, F.D.4    Flores, R.5
  • 25
    • 79958250847 scopus 로고    scopus 로고
    • Fragment complementation and co-immunopre-cipitation assays for understanding R protein structure and function
    • Moffett, P. (2011). Fragment complementation and co-immunopre-cipitation assays for understanding R protein structure and function. Methods Mol. Biol. 712: 9-20.
    • (2011) Methods Mol. Biol , vol.712 , pp. 9-20
    • Moffett, P.1
  • 26
    • 84862223028 scopus 로고    scopus 로고
    • Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing
    • Navarro, B., Gisel, A., Rodio, M.E., Delgado, S., Flores, R., and Di Serio, F. (2012). Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing. Plant J. 70: 991-1003.
    • (2012) Plant J , vol.70 , pp. 991-1003
    • Navarro, B.1    Gisel, A.2    Rodio, M.E.3    Delgado, S.4    Flores, R.5    Di Serio, F.6
  • 27
    • 38949151063 scopus 로고    scopus 로고
    • Gene silencing in plants using artificial microRNAs and other small RNAs
    • Ossowski, S., Schwab, R., and Weigel, D. (2008). Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J. 53: 674-690.
    • (2008) Plant J , vol.53 , pp. 674-690
    • Ossowski, S.1    Schwab, R.2    Weigel, D.3
  • 28
    • 84858952268 scopus 로고    scopus 로고
    • Global analysis of tomato gene expression during Potato spindle tuber viroid infection reveals a complex array of changes affecting hormone signaling
    • Owens, R.A., Tech, K.B., Shao, J.Y., Sano, T and Baker, C.J. (2012). Global analysis of tomato gene expression during Potato spindle tuber viroid infection reveals a complex array of changes affecting hormone signaling. Mol. Plant Microbe Interact. 25: 582-598.
    • (2012) Mol. Plant Microbe Interact , vol.25 , pp. 582-598
    • Owens, R.A.1    Tech, K.B.2    Shao, J.Y.3    Sano, T.4    Baker, C.J.5
  • 29
    • 84934439572 scopus 로고    scopus 로고
    • The interaction between plant viroid-induced symptoms and RNA silencing
    • Pallás, V., Martínez, G., and Gómez, G. (2012). The interaction between plant viroid-induced symptoms and RNA silencing. Methods Mol. Biol. 894: 323-343.
    • (2012) Methods Mol. Biol , vol.894 , pp. 323-343
    • Pallás, V.1    Martínez, G.2    Gómez, G.3
  • 30
    • 77949447172 scopus 로고    scopus 로고
    • RNAstructure: Software for RNA secondary structure prediction and analysis
    • Reuter, J.S., and Mathews, D.H. (2010). RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinformatics 11: 129.
    • (2010) BMC Bioinformatics , vol.11 , pp. 129
    • Reuter, J.S.1    Mathews, D.H.2
  • 31
    • 33745393624 scopus 로고    scopus 로고
    • Highly specificgenesilencing by artificial microRNAs in Arabidopsis
    • Schwab, R., Ossowski, S., Riester, M., Warthmann, N., and Weigel, D. (2006). Highly specificgenesilencing by artificial microRNAs in Arabidopsis. Plant Cell 18: 1121-1133.
    • (2006) Plant Cell , vol.18 , pp. 1121-1133
    • Schwab, R.1    Ossowski, S.2    Riester, M.3    Warthmann, N.4    Weigel, D.5
  • 32
    • 33846493050 scopus 로고    scopus 로고
    • Reassessment of the presence of viroid species of the genus Pospiviroid in infected floral parts, using reverse transcription-polymerase chain reaction and infectivity assays
    • Singh, R.P. (2006). Reassessment of the presence of viroid species of the genus Pospiviroid in infected floral parts, using reverse transcription-polymerase chain reaction and infectivity assays. Can. J. Plant Pathol. 28: 242-249.
    • (2006) Can. J. Plant Pathol , vol.28 , pp. 242-249
    • Singh, R.P.1
  • 33
    • 84863693752 scopus 로고    scopus 로고
    • The tomato genome sequence provides insights into fleshy fruit evolution
    • Tomato Genome Consortium
    • Tomato Genome Consortium (2012). The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635-641.
    • (2012) Nature , vol.485 , pp. 635-641
  • 34
    • 80052451056 scopus 로고    scopus 로고
    • Experimental strategies for microRNA target identification
    • Thomson, D.W., Bracken, C.P., and Goodall, G.J. (2011). Experimental strategies for microRNA target identification. Nucleic Acids Res. 39: 6845-6853.
    • (2011) Nucleic Acids Res , vol.39 , pp. 6845-6853
    • Thomson, D.W.1    Bracken, C.P.2    Goodall, G.J.3
  • 35
    • 84922103527 scopus 로고    scopus 로고
    • Changes in relative expression levels of viroid-specific small RNAs and microRNAs in tomato plants infected with severe and mild isolates of Potato spindle tuber viroid
    • Tsushima, D., Adkar-Purushothama, C.R., Taneda, A., and Sano, T. (2015). Changes in relative expression levels of viroid-specific small RNAs and microRNAs in tomato plants infected with severe and mild isolates of Potato spindle tuber viroid. J. Gen. Plant Pathol. 81: 49-62.
    • (2015) J. Gen. Plant Pathol , vol.81 , pp. 49-62
    • Tsushima, D.1    Adkar-Purushothama, C.R.2    Taneda, A.3    Sano, T.4
  • 37
    • 8744242004 scopus 로고    scopus 로고
    • Natural infections of tomato by Citrus exocortis viroid, Columnea latent viroid, Potato spindle tuber viroid and Tomato chlorotic dwarf viroid
    • Verhoeven, J.Th.J., Jansen, C.C.C., Willemen, T.M., Kox, L.F.F., Owens, R.A., and Roenhorst, J.W. (2004). Natural infections of tomato by Citrus exocortis viroid, Columnea latent viroid, Potato spindle tuber viroid and Tomato chlorotic dwarf viroid. Eur. J. Plant Pathol. 110: 823-831.
    • (2004) Eur. J. Plant Pathol , vol.110 , pp. 823-831
    • Verhoeven, J.1    Jansen, C.2    Willemen, T.M.3    Kox, L.4    Owens, R.A.5    Roenhorst, J.W.6
  • 38
    • 84864071089 scopus 로고    scopus 로고
    • A simplified method for constructing artificial microRNAs based on the osa-MIR528 precursor
    • Yan, F., Lu, Y., Wu, G., Peng, J., Zheng, H., Lin, L., and Chen, J. (2012). A simplified method for constructing artificial microRNAs based on the osa-MIR528 precursor. J. Biotechnol. 160: 146-150.
    • (2012) J. Biotechnol , vol.160 , pp. 146-150
    • Yan, F.1    Lu, Y.2    Wu, G.3    Peng, J.4    Zheng, H.5    Lin, L.6    Chen, J.7
  • 39
    • 43549096950 scopus 로고    scopus 로고
    • A genomic map of viroid RNA motifs critical for replication and systemic traf-ticking
    • Zhong, X., Archual, A.J., Amin, A.A., and Ding, B. (2008). A genomic map of viroid RNA motifs critical for replication and systemic traf-ticking. Plant Cell 20: 35-47.
    • (2008) Plant Cell , vol.20 , pp. 35-47
    • Zhong, X.1    Archual, A.J.2    Amin, A.A.3    Ding, B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.