메뉴 건너뛰기




Volumn 22, Issue 11, 2015, Pages 889-897

Rif1 binds to G quadruplexes and suppresses replication over long distances

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE QUADRUPLEX; PROTEIN RIF1; UNCLASSIFIED DRUG; FUNGAL DNA; PROTEIN BINDING; RIF1 PROTEIN, S POMBE; SCHIZOSACCHAROMYCES POMBE PROTEIN; TELOMERE BINDING PROTEIN;

EID: 84948071666     PISSN: 15459993     EISSN: 15459985     Source Type: Journal    
DOI: 10.1038/nsmb.3102     Document Type: Article
Times cited : (133)

References (46)
  • 1
  • 2
    • 84877815977 scopus 로고    scopus 로고
    • Genetic and epigenetic determinants of DNA replication origins, position and activation
    • Méchali, M., Yoshida, K., Coulombe, P. & Pasero, P. Genetic and epigenetic determinants of DNA replication origins, position and activation. Curr. Opin. Genet. Dev. 23, 124-131 (2013).
    • (2013) Curr. Opin. Genet. Dev. , vol.23 , pp. 124-131
    • Méchali, M.1    Yoshida, K.2    Coulombe, P.3    Pasero, P.4
  • 3
    • 84873044090 scopus 로고    scopus 로고
    • Location, location, location: It's all in the timing for replication origins
    • Aparicio, O. M. Location, location, location: it's all in the timing for replication origins. Genes Dev. 27, 117-128 (2013).
    • (2013) Genes Dev. , vol.27 , pp. 117-128
    • Aparicio, O.M.1
  • 4
    • 84855720100 scopus 로고    scopus 로고
    • Multiple pathways can bypass the essential role of fission yeast Hsk1 kinase in DNA replication initiation
    • Matsumoto, S., Hayano, M., Kanoh, Y. & Masai, H. Multiple pathways can bypass the essential role of fission yeast Hsk1 kinase in DNA replication initiation. J. Cell Biol. 195, 387-401 (2011).
    • (2011) J. Cell Biol. , vol.195 , pp. 387-401
    • Matsumoto, S.1    Hayano, M.2    Kanoh, Y.3    Masai, H.4
  • 5
    • 84856103786 scopus 로고    scopus 로고
    • Forkhead transcription factors establish origin timing and long-range clustering in S
    • Knott, S. R. et al. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell 148, 99-111 (2012).
    • (2012) Cerevisiae. Cell , vol.148 , pp. 99-111
    • Knott, S.R.1
  • 6
    • 84887403791 scopus 로고    scopus 로고
    • Time to be versatile: Regulation of the replication timing program in budding yeast
    • Yoshida, K., Poveda, A. & Pasero, P. Time to be versatile: regulation of the replication timing program in budding yeast. J. Mol. Biol. 425, 4696-4705 (2013).
    • (2013) J. Mol. Biol. , vol.425 , pp. 4696-4705
    • Yoshida, K.1    Poveda, A.2    Pasero, P.3
  • 7
    • 84856281556 scopus 로고    scopus 로고
    • Rif1 is a global regulator of timing of replication origin firing in fission yeast
    • Hayano, M. et al. Rif1 is a global regulator of timing of replication origin firing in fission yeast. Genes Dev. 26, 137-150 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 137-150
    • Hayano, M.1
  • 8
    • 84866427034 scopus 로고    scopus 로고
    • Rif1 regulates the replication timing domains on the human genome
    • Yamazaki, S. et al. Rif1 regulates the replication timing domains on the human genome. EMBO J. 31, 3667-3677 (2012).
    • (2012) EMBO J. , vol.31 , pp. 3667-3677
    • Yamazaki, S.1
  • 9
    • 84866412836 scopus 로고    scopus 로고
    • Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells
    • Cornacchia, D. et al. Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells. EMBO J. 31, 3678-3690 (2012).
    • (2012) EMBO J. , vol.31 , pp. 3678-3690
    • Cornacchia, D.1
  • 10
    • 84893920696 scopus 로고    scopus 로고
    • Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex
    • Hiraga, S. et al. Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex. Genes Dev. 28, 372-383 (2014).
    • (2014) Genes Dev. , vol.28 , pp. 372-383
    • Hiraga, S.1
  • 11
    • 84898051697 scopus 로고    scopus 로고
    • Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity
    • Davé, A., Cooley, C., Garg, M. & Bianchi, A. Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity. Cell Reports 7, 53-61 (2014).
    • (2014) Cell Reports , vol.7 , pp. 53-61
    • Davé, A.1    Cooley, C.2    Garg, M.3    Bianchi, A.4
  • 12
    • 84898041281 scopus 로고    scopus 로고
    • Rif1 controls DNA replication timing in yeast through the PP1 phosphatase Glc7
    • Mattarocci, S. et al. Rif1 controls DNA replication timing in yeast through the PP1 phosphatase Glc7. Cell Reports 7, 62-69 (2014).
    • (2014) Cell Reports , vol.7 , pp. 62-69
    • Mattarocci, S.1
  • 13
    • 3543064379 scopus 로고    scopus 로고
    • Human Rif1 ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint
    • Silverman, J., Takai, H., Buonomo, S. B. C., Eisenhaber, F. & De Lange, T. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev. 18, 2108-2119 (2004).
    • (2004) Genes Dev. , vol.18 , pp. 2108-2119
    • Silverman, J.1    Takai, H.2    Buonomo, S.B.C.3    Eisenhaber, F.4    De Lange, T.5
  • 15
    • 84873526612 scopus 로고    scopus 로고
    • Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching
    • Di Virgilio, M. et al. Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching. Science 339, 711-715 (2013).
    • (2013) Science , vol.339 , pp. 711-715
    • Di Virgilio, M.1
  • 16
    • 84876855215 scopus 로고    scopus 로고
    • RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection
    • Chapman, J. R. et al. RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection. Mol. Cell 49, 858-871 (2013).
    • (2013) Mol. Cell , vol.49 , pp. 858-871
    • Chapman, J.R.1
  • 17
    • 84876877091 scopus 로고    scopus 로고
    • A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice
    • Escribano-Díaz, C. et al. A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice. Mol. Cell 49, 872-883 (2013).
    • (2013) Mol. Cell , vol.49 , pp. 872-883
    • Escribano-Díaz, C.1
  • 18
    • 84878893538 scopus 로고    scopus 로고
    • 53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions
    • Callen, E. et al. 53BP1 mediates productive and mutagenic DNA repair through distinct phosphoprotein interactions. Cell 153, 1266-1280 (2013).
    • (2013) Cell , vol.153 , pp. 1266-1280
    • Callen, E.1
  • 19
    • 84876527317 scopus 로고    scopus 로고
    • RIF1 counteracts BRCA1-mediated end resection during DNA repair
    • Feng, L., Fong, K. W., Wang, J., Wang, W. & Chen, J. RIF1 counteracts BRCA1-mediated end resection during DNA repair. J. Biol. Chem. 288, 11135-11143 (2013).
    • (2013) J. Biol. Chem. , vol.288 , pp. 11135-11143
    • Feng, L.1    Fong, K.W.2    Wang, J.3    Wang, W.4    Chen, J.5
  • 20
    • 33751092246 scopus 로고    scopus 로고
    • A protein interaction network for pluripotency of embryonic stem cells
    • Wang, J. et al. A protein interaction network for pluripotency of embryonic stem cells. Nature 444, 364-368 (2006).
    • (2006) Nature , vol.444 , pp. 364-368
    • Wang, J.1
  • 21
    • 84898436514 scopus 로고    scopus 로고
    • Rif1 maintains telomere length homeostasis of ESCs by mediating heterochromatin silencing
    • Dan, J. et al. Rif1 maintains telomere length homeostasis of ESCs by mediating heterochromatin silencing. Dev. Cell 29, 7-19 (2014).
    • (2014) Dev. Cell , vol.29 , pp. 7-19
    • Dan, J.1
  • 22
    • 0035899938 scopus 로고    scopus 로고
    • SpRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast
    • Kanoh, J. & Ishikawa, F. spRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast. Curr. Biol. 11, 1624-1630 (2001).
    • (2001) Curr. Biol. , vol.11 , pp. 1624-1630
    • Kanoh, J.1    Ishikawa, F.2
  • 23
    • 67849122320 scopus 로고    scopus 로고
    • MEME Suite: Tools for motif discovery and searching
    • Bailey, T. L. et al. MEME Suite: Tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208 (2009).
    • (2009) Nucleic Acids Res. 37, W202-W208
    • Bailey, T.L.1
  • 24
    • 78650458168 scopus 로고    scopus 로고
    • Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
    • Tanizawa, H. et al. Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation. Nucleic Acids Res. 38, 8164-8177 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 8164-8177
    • Tanizawa, H.1
  • 25
    • 84867744921 scopus 로고    scopus 로고
    • DNA secondary structures: Stability and function of G-quadruplex structures
    • Bochman, M. L., Paeschke, K. & Zakian, V. A. DNA secondary structures: stability and function of G-quadruplex structures. Nat. Rev. Genet. 13, 770-780 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 770-780
    • Bochman, M.L.1    Paeschke, K.2    Zakian, V.A.3
  • 27
    • 0032554620 scopus 로고    scopus 로고
    • Effect of DNA secondary structure on human telomerase activity
    • Fletcher, T. M., Sun, D., Salazar, M. & Hurley, L. H. Effect of DNA secondary structure on human telomerase activity. Biochemistry 37, 5536-5541 (1998).
    • (1998) Biochemistry , vol.37 , pp. 5536-5541
    • Fletcher, T.M.1    Sun, D.2    Salazar, M.3    Hurley, L.H.4
  • 28
    • 84887447149 scopus 로고    scopus 로고
    • Fluorescent-ligand-mediated screening of G-quadruplex structures using a DNA microarray
    • Iida, K. et al. Fluorescent-ligand-mediated screening of G-quadruplex structures using a DNA microarray. Angew. Chem. Int. Ed. Engl. 52, 12052-12055 (2013).
    • (2013) Angew. Chem. Int. Ed. Engl. , vol.52 , pp. 12052-12055
    • Iida, K.1
  • 29
    • 84875464903 scopus 로고    scopus 로고
    • Quantitative visualization of DNA G-quadruplex structures in human cells
    • Biffi, G., Tannahill, D., McCafferty, J. & Balasubramanian, S. Quantitative visualization of DNA G-quadruplex structures in human cells. Nat. Chem. 5, 182-186 (2013).
    • (2013) Nat. Chem. , vol.5 , pp. 182-186
    • Biffi, G.1    Tannahill, D.2    McCafferty, J.3    Balasubramanian, S.4
  • 30
    • 84865573234 scopus 로고    scopus 로고
    • Purification of replication factors using insect and mammalian cell expression systems
    • Uno, S., You, Z. & Masai, H. Purification of replication factors using insect and mammalian cell expression systems. Methods 57, 214-221 (2012).
    • (2012) Methods , vol.57 , pp. 214-221
    • Uno, S.1    You, Z.2    Masai, H.3
  • 31
    • 77956886919 scopus 로고    scopus 로고
    • Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication
    • Xu, D. et al. Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication. EMBO J. 29, 3140-3155 (2010).
    • (2010) EMBO J. , vol.29 , pp. 3140-3155
    • Xu, D.1
  • 32
    • 84900992807 scopus 로고    scopus 로고
    • Structural and biophysical characterization of murine Rif1 C terminus reveals high specificity for DNA cruciform structures
    • Sukackaite, R. et al. Structural and biophysical characterization of murine Rif1 C terminus reveals high specificity for DNA cruciform structures. J. Biol. Chem. 289, 13903-13911 (2014).
    • (2014) J. Biol. Chem. , vol.289 , pp. 13903-13911
    • Sukackaite, R.1
  • 33
    • 84918536890 scopus 로고    scopus 로고
    • Formation of G-quadruplexes in poly-G sequences: Structure of a propeller-type parallel-stranded G-quadruplex formed by a G15 stretch
    • Sengar, A., Hiddi, B. & Phan, A. T. Formation of G-quadruplexes in poly-G sequences: structure of a propeller-type parallel-stranded G-quadruplex formed by a G15 stretch. Biochemistry 53, 7718-7723 (2014).
    • (2014) Biochemistry , vol.53 , pp. 7718-7723
    • Sengar, A.1    Hiddi, B.2    Phan, A.T.3
  • 34
    • 84928235601 scopus 로고    scopus 로고
    • The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage
    • Sabouri, N., Capra, J. & Zakian, V. A. The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage. BMC Biol. 12, 101 (2014).
    • (2014) BMC Biol. , vol.12 , pp. 101
    • Sabouri, N.1    Capra, J.2    Zakian, V.A.3
  • 35
    • 80052283925 scopus 로고    scopus 로고
    • Palmitoylation controls the dynamics of budding-yeast heterochromatin via the telomere-binding protein Rif1
    • Park, S. et al. Palmitoylation controls the dynamics of budding-yeast heterochromatin via the telomere-binding protein Rif1. Proc. Natl. Acad. Sci. USA 108, 14572-14577 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 14572-14577
    • Park, S.1
  • 36
    • 84857472898 scopus 로고    scopus 로고
    • New insights into replication origin characteristics in metazoans
    • Cayrou, C. et al. New insights into replication origin characteristics in metazoans. Cell Cycle 11, 658-667 (2012).
    • (2012) Cell Cycle , vol.11 , pp. 658-667
    • Cayrou, C.1
  • 37
    • 84898649803 scopus 로고    scopus 로고
    • G4 motifs affect origin positioning and efficiency in two vertebrate replicators
    • Valton, A. L. et al. G4 motifs affect origin positioning and efficiency in two vertebrate replicators. EMBO J. 33, 732-746 (2014).
    • (2014) EMBO J , vol.33 , pp. 732-746
    • Valton, A.L.1
  • 38
    • 84878892591 scopus 로고    scopus 로고
    • Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions
    • Shi, T. et al. Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions. Cell 153, 1340-1353 (2013).
    • (2013) Cell , vol.153 , pp. 1340-1353
    • Shi, T.1
  • 39
    • 0042865938 scopus 로고    scopus 로고
    • S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex
    • Katou, Y. et al. S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex. Nature 424, 1078-1083 (2003).
    • (2003) Nature , vol.424 , pp. 1078-1083
    • Katou, Y.1
  • 40
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 41
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol. , vol.9 , pp. R137
    • Zhang, Y.1
  • 42
    • 70349739736 scopus 로고    scopus 로고
    • The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets
    • Nicol, J. W., Helt, G. A., Blanchard, S. G., Raja, A. & Loraine, A. E. The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 25, 2730-2731 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2730-2731
    • Nicol, J.W.1    Helt, G.A.2    Blanchard, S.G.3    Raja, A.4    Loraine, A.E.5
  • 43
    • 79958117256 scopus 로고    scopus 로고
    • MEME-ChIP: Motif analysis of large DNA datasets
    • Machanick, P. & Bailey, T. L. MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics 27, 1696-1697 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 44
    • 75649089282 scopus 로고    scopus 로고
    • Molecular crowding creates an essential environment for the formation of stable-quadruplexe G-quadruplexes in long double-stranded DNA
    • Zheng, K. W., Chen, Z., Hao, Y. H. & Tan, Z. Molecular crowding creates an essential environment for the formation of stable-quadruplexe G-quadruplexes in long double-stranded DNA. Nucleic Acids Res. 38, 327-338 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 327-338
    • Zheng, K.W.1    Chen, Z.2    Hao, Y.H.3    Tan, Z.4
  • 45
    • 33845913565 scopus 로고    scopus 로고
    • A simple vector system to improve performance and utilisation of recombinant antibodies
    • Martin, C. D. et al. A simple vector system to improve performance and utilisation of recombinant antibodies. BMC Biotechnol. 6, 46 (2006).
    • (2006) BMC Biotechnol , vol.6 , pp. 46
    • Martin, C.D.1
  • 46
    • 0034611749 scopus 로고    scopus 로고
    • The Cdt1 protein is required to license DNA for replication in fission yeast
    • Nishitani, H., Lygerou, Z., Nishimoto, T. & Nurse, P. The Cdt1 protein is required to license DNA for replication in fission yeast. Nature 404, 625-628 (2000).
    • (2000) Nature , vol.404 , pp. 625-628
    • Nishitani, H.1    Lygerou, Z.2    Nishimoto, T.3    Nurse, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.