-
1
-
-
0026623241
-
A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation
-
Hardy, C. F., Sussel, L., and Shore, D. (1992) A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation. Genes Dev. 6, 801-814
-
(1992)
Genes Dev.
, vol.6
, pp. 801-814
-
-
Hardy, C.F.1
Sussel, L.2
Shore, D.3
-
2
-
-
2042534735
-
Telomere length homeostasis is achieved via a switch between telomerase-extend-ible and -nonextendible states
-
Teixeira, M. T., Arneric, M., Sperisen, P., and Lingner, J. (2004) Telomere length homeostasis is achieved via a switch between telomerase-extend-ible and -nonextendible states. Cell 117, 323-335
-
(2004)
Cell
, vol.117
, pp. 323-335
-
-
Teixeira, M.T.1
Arneric, M.2
Sperisen, P.3
Lingner, J.4
-
3
-
-
83455195578
-
Live cell imaging of telomerase RNA dynamics reveals cell cycle-dependent clustering of telomerase at elongating telomeres
-
Gallardo, F., Laterreur, N., Cusanelli, E., Ouenzar, F., Querido, E., Wellinger, R. J., and Chartrand, P. (2011) Live cell imaging of telomerase RNA dynamics reveals cell cycle-dependent clustering of telomerase at elongating telomeres. Mol. Cell 44, 819-827
-
(2011)
Mol. Cell
, vol.44
, pp. 819-827
-
-
Gallardo, F.1
Laterreur, N.2
Cusanelli, E.3
Ouenzar, F.4
Querido, E.5
Wellinger, R.J.6
Chartrand, P.7
-
4
-
-
84878892591
-
Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions
-
Shi, T., Bunker, R. D., Mattarocci, S., Ribeyre, C., Faty, M., Gut, H., Scrima, A., Rass, U., Rubin, S. M., Shore, D., and Thomä N. H. (2013) Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions. Cell 153, 1340-1353
-
(2013)
Cell
, vol.153
, pp. 1340-1353
-
-
Shi, T.1
Bunker, R.D.2
Mattarocci, S.3
Ribeyre, C.4
Faty, M.5
Gut, H.6
Scrima, A.7
Rass, U.8
Rubin, S.M.9
Shore, D.10
Thomä, N.H.11
-
5
-
-
3543064379
-
Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint
-
Silverman, J., Takai, H., Buonomo, S. B., Eisenhaber, F., and de Lange, T. (2004) Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev. 18, 2108-2119
-
(2004)
Genes Dev.
, vol.18
, pp. 2108-2119
-
-
Silverman, J.1
Takai, H.2
Buonomo, S.B.3
Eisenhaber, F.4
De Lange, T.5
-
6
-
-
10344235232
-
Human Rif1 protein binds aberrant telomeres and aligns along anaphase midzone microtubules
-
Xu, L., and Blackburn, E. H. (2004) Human Rif1 protein binds aberrant telomeres and aligns along anaphase midzone microtubules. J. Cell Biol. 167, 819-830
-
(2004)
J. Cell Biol.
, vol.167
, pp. 819-830
-
-
Xu, L.1
Blackburn, E.H.2
-
7
-
-
75549090255
-
Mammalian Rif1 contributes to replication stress survival and homology-directed repair
-
Buonomo, S. B., Wu, Y., Ferguson, D., and de Lange, T. (2009) Mammalian Rif1 contributes to replication stress survival and homology-directed repair. J. Cell Biol. 187, 385-398
-
(2009)
J. Cell Biol.
, vol.187
, pp. 385-398
-
-
Buonomo, S.B.1
Wu, Y.2
Ferguson, D.3
De Lange, T.4
-
8
-
-
84876855215
-
RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection
-
Chapman, J.R., Barral, P., Vannier, J. B., Borel, V., Steger, M., Tomas-Loba, A., Sartori, A. A., Adams, I. R., Batista, F. D., and Boulton, S. J. (2013) RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection. Mol. Cell 49, 858-871
-
(2013)
Mol. Cell
, vol.49
, pp. 858-871
-
-
Chapman, J.R.1
Barral, P.2
Vannier, J.B.3
Borel, V.4
Steger, M.5
Tomas-Loba, A.6
Sartori, A.A.7
Adams, I.R.8
Batista, F.D.9
Boulton, S.J.10
-
9
-
-
84873488846
-
53BP1 regulates DSB repair using Rif1 to control 5α end resection
-
Zimmermann, M., Lottersberger, F., Buonomo, S. B., Sfeir, A., and de Lange, T. (2013) 53BP1 regulates DSB repair using Rif1 to control 5α end resection. Science 339, 700-704
-
(2013)
Science
, vol.339
, pp. 700-704
-
-
Zimmermann, M.1
Lottersberger, F.2
Buonomo, S.B.3
Sfeir, A.4
De Lange, T.5
-
10
-
-
84873526612
-
Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching
-
Di Virgilio, M., Callen, E., Yamane, A., Zhang, W., Jankovic, M., Gitlin, A. D., Feldhahn, N., Resch, W., Oliveira, T. Y., Chait, B. T., Nussenzweig, A., Casellas, R., Robbiani, D. F., and Nussenzweig, M. C. (2013) Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching. Science 339, 711-715
-
(2013)
Science
, vol.339
, pp. 711-715
-
-
Di Virgilio, M.1
Callen, E.2
Yamane, A.3
Zhang, W.4
Jankovic, M.5
Gitlin, A.D.6
Feldhahn, N.7
Resch, W.8
Oliveira, T.Y.9
Chait, B.T.10
Nussenzweig, A.11
Casellas, R.12
Robbiani, D.F.13
Nussenzweig, M.C.14
-
11
-
-
84876877091
-
A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice
-
Escribano-Díaz, C., Orthwein, A., Fradet-Turcotte, A., Xing, M., Young, J. T., Tkáč J., Cook, M.A., Rosebrock, A. P., Munro, M., Canny, M. D., Xu, D., and Durocher, D. (2013) A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice. Mol. Cell 49, 872-883
-
(2013)
Mol. Cell
, vol.49
, pp. 872-883
-
-
Escribano-Díaz, C.1
Orthwein, A.2
Fradet-Turcotte, A.3
Xing, M.4
Young, J.T.5
Tkáč, J.6
Cook, M.A.7
Rosebrock, A.P.8
Munro, M.9
Canny, M.D.10
Xu, D.11
Durocher, D.12
-
12
-
-
84876527317
-
RIF1 counteracts BRCA1-mediated end resection during DNA repair
-
Feng, L., Fong, K. W., Wang, J., Wang, W., and Chen, J. (2013) RIF1 counteracts BRCA1-mediated end resection during DNA repair. J. Biol. Chem. 288, 11135-11143
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 11135-11143
-
-
Feng, L.1
Fong, K.W.2
Wang, J.3
Wang, W.4
Chen, J.5
-
13
-
-
84856281556
-
Rif1 is a global regulator of timing of replication origin firing in fission yeast
-
Hayano, M., Kanoh, Y., Matsumoto, S., Renard-Guillet, C., Shirahige, K., and Masai, H. (2012) Rif1 is a global regulator of timing of replication origin firing in fission yeast. Genes Dev. 26, 137-150
-
(2012)
Genes Dev.
, vol.26
, pp. 137-150
-
-
Hayano, M.1
Kanoh, Y.2
Matsumoto, S.3
Renard-Guillet, C.4
Shirahige, K.5
Masai, H.6
-
14
-
-
84866412836
-
Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells
-
Cornacchia, D., Dileep, V., Quivy, J. P., Foti, R., Tili, F., Santarella-Mellwig, R., Antony, C., Almouzni, G., Gilbert, D. M., and Buonomo, S. B. (2012) Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells. EMBO J. 31, 3678-3690
-
(2012)
EMBO J.
, vol.31
, pp. 3678-3690
-
-
Cornacchia, D.1
Dileep, V.2
Quivy, J.P.3
Foti, R.4
Tili, F.5
Santarella-Mellwig, R.6
Antony, C.7
Almouzni, G.8
Gilbert, D.M.9
Buonomo, S.B.10
-
15
-
-
84866427034
-
Rif1 regulates the replication timing domains on the human genome
-
Yamazaki, S., Ishii, A., Kanoh, Y., Oda, M., Nishito, Y., and Masai, H. (2012) Rif1 regulates the replication timing domains on the human genome. EMBO J. 31, 3667-3677
-
(2012)
EMBO J.
, vol.31
, pp. 3667-3677
-
-
Yamazaki, S.1
Ishii, A.2
Kanoh, Y.3
Oda, M.4
Nishito, Y.5
Masai, H.6
-
16
-
-
28044470766
-
Nuclear matrix support of DNA replication
-
Anachkova, B., Djeliova, V., and Russev, G. (2005) Nuclear matrix support of DNA replication. J. Cell. Biochem. 96, 951-961
-
(2005)
J. Cell. Biochem.
, vol.96
, pp. 951-961
-
-
Anachkova, B.1
Djeliova, V.2
Russev, G.3
-
17
-
-
78651471511
-
DNA moves sequentially towards the nuclear matrix during DNA replication in vivo
-
Rivera-Mulia, J. C., Hernández-Muñoz, R., Martínez, F., and Aranda-Anzaldo, A. (2011) DNA moves sequentially towards the nuclear matrix during DNA replication in vivo. BMC Cell Biol. 12, 3
-
(2011)
BMC Cell Biol.
, vol.12
, pp. 3
-
-
Rivera-Mulia, J.C.1
Hernández-Muñoz, R.2
Martínez, F.3
Aranda-Anzaldo, A.4
-
18
-
-
77956886919
-
Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication
-
Xu, D., Muniandy, P., Leo, E., Yin, J., Thangavel, S., Shen, X., Ii, M., Agama, K., Guo, R., Fox, D., 3rd, Meetei, A. R., Wilson, L., Nguyen, H., Weng, N. P., Brill, S. J., Li, L., Vindigni, A., Pommier, Y., Seidman, M., and Wang, W. (2010) Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication. EMBO J. 29, 3140-3155
-
(2010)
EMBO J.
, vol.29
, pp. 3140-3155
-
-
Xu, D.1
Muniandy, P.2
Leo, E.3
Yin, J.4
Thangavel, S.5
Shen, X.6
Ii, M.7
Agama, K.8
Guo, R.9
Fox, D.10
Meetei III, A.R.11
Wilson, L.12
Nguyen, H.13
Weng, N.P.14
Brill, S.J.15
Li, L.16
Vindigni, A.17
Pommier, Y.18
Seidman, M.19
Wang, W.20
more..
-
19
-
-
77955279255
-
The extended PP1 toolkit: Designed to create specificity
-
Bollen, M., Peti, W., Ragusa, M. J., and Beullens, M. (2010) The extended PP1 toolkit: designed to create specificity. Trends Biochem. Sci. 35, 450-458
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 450-458
-
-
Bollen, M.1
Peti, W.2
Ragusa, M.J.3
Beullens, M.4
-
20
-
-
64749085585
-
Docking motif-guided mapping of the interactome of protein phosphatase-1
-
Hendrickx, A., Beullens, M., Ceulemans, H., Den Abt, T., Van Eynde, A., Nicolaescu, E., Lesage, B., and Bollen, M. (2009) Docking motif-guided mapping of the interactome of protein phosphatase-1. Chem. Biol. 16, 365-371
-
(2009)
Chem. Biol.
, vol.16
, pp. 365-371
-
-
Hendrickx, A.1
Beullens, M.2
Ceulemans, H.3
Den Abt, T.4
Van Eynde, A.5
Nicolaescu, E.6
Lesage, B.7
Bollen, M.8
-
21
-
-
84862277336
-
Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes
-
Sreesankar, E., Senthilkumar, R., Bharathi, V., Mishra, R. K., and Mishra, K. (2012) Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes. BMC Genomics 13, 255
-
(2012)
BMC Genomics
, vol.13
, pp. 255
-
-
Sreesankar, E.1
Senthilkumar, R.2
Bharathi, V.3
Mishra, R.K.4
Mishra, K.5
-
22
-
-
77956185960
-
ESPRIT: An automated, library-based method for mapping and soluble expression of protein domains from challenging targets
-
Yumerefendi, H., Tarendeau, F., Mas, P. J., and Hart, D. J. (2010) ESPRIT: an automated, library-based method for mapping and soluble expression of protein domains from challenging targets. J. Struct. Biol. 172, 66-74
-
(2010)
J. Struct. Biol.
, vol.172
, pp. 66-74
-
-
Yumerefendi, H.1
Tarendeau, F.2
Mas, P.J.3
Hart, D.J.4
-
23
-
-
84879169708
-
Library methods for structural biology of challenging proteins and their complexes
-
Hart, D. J., and Waldo, G. S. (2013) Library methods for structural biology of challenging proteins and their complexes. Curr. Opin. Struct. Biol. 23, 403-408
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 403-408
-
-
Hart, D.J.1
Waldo, G.S.2
-
24
-
-
79961111848
-
Cruciform structures are a common DNA feature important for regulating biological processes
-
Brázda, V., Laister, R. C., Jagelská E. B., and Arrowsmith, C. (2011) Cruciform structures are a common DNA feature important for regulating biological processes. BMC Mol. Biol. 12, 33
-
(2011)
BMC Mol. Biol.
, vol.12
, pp. 33
-
-
Brázda, V.1
Laister, R.C.2
Jagelská, E.B.3
Arrowsmith, C.4
-
25
-
-
33847624936
-
Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit
-
Tarendeau, F., Boudet, J., Guilligay, D., Mas, P. J., Bougault, C. M., Boulo, S., Baudin, F., Ruigrok, R. W., Daigle, N., Ellenberg, J., Cusack, S., Simorre, J. P., and Hart, D. J. (2007) Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit. Nat. Struct. Mol. Biol. 14, 229-233
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 229-233
-
-
Tarendeau, F.1
Boudet, J.2
Guilligay, D.3
Mas, P.J.4
Bougault, C.M.5
Boulo, S.6
Baudin, F.7
Ruigrok, R.W.8
Daigle, N.9
Ellenberg, J.10
Cusack, S.11
Simorre, J.P.12
Hart, D.J.13
-
26
-
-
3042566944
-
An automated method for high-throughput protein purification applied to a comparison of His-tag and GST-tag affinity chromatography
-
Scheich, C., Sievert, V., and Büssow, K. (2003) An automated method for high-throughput protein purification applied to a comparison of His-tag and GST-tag affinity chromatography. BMC Biotechnol. 3, 12
-
(2003)
BMC Biotechnol.
, vol.3
, pp. 12
-
-
Scheich, C.1
Sievert, V.2
Büssow, K.3
-
27
-
-
44349174992
-
FANCM of the Fanconi anemia core complex is required for both monoubiquitination and DNA repair
-
Xue, Y., Li, Y., Guo, R., Ling, C., and Wang, W. (2008) FANCM of the Fanconi anemia core complex is required for both monoubiquitination and DNA repair. Hum. Mol. Genet. 17, 1641-1652
-
(2008)
Hum. Mol. Genet.
, vol.17
, pp. 1641-1652
-
-
Xue, Y.1
Li, Y.2
Guo, R.3
Ling, C.4
Wang, W.5
-
28
-
-
0038352888
-
Analysis of protein-DNA binding at equilibrium
-
Rippe, K. (1997) Analysis of protein-DNA binding at equilibrium. B. I. F. Futura 12, 20-26
-
(1997)
B. I. F. Futura
, vol.12
, pp. 20-26
-
-
Rippe, K.1
-
29
-
-
34250159870
-
A set of BEST tripleresonance experiments for time-optimized protein resonance assignment
-
Lescop, E., Schanda, P., and Brutscher, B. (2007) A set of BEST tripleresonance experiments for time-optimized protein resonance assignment. J. Magn. Reson. 187, 163-169
-
(2007)
J. Magn. Reson.
, vol.187
, pp. 163-169
-
-
Lescop, E.1
Schanda, P.2
Brutscher, B.3
-
30
-
-
0242267500
-
Predicting intrinsic disorder from amino acid sequence
-
Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., Brown, C. J., and Dunker, A. K. (2003) Predicting intrinsic disorder from amino acid sequence. Proteins 53, Suppl. 6, 566-572
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 566-572
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Brown, C.J.5
Dunker, A.K.6
-
31
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztányi, Z., Csizmok, V., Tompa, P., and Simon, I. (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21, 3433-3434
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
32
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztányi, Z., Csizmók, V., Tompa, P., and Simon, I. (2005) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J. Mol. Biol. 347, 827-839
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 827-839
-
-
Dosztányi, Z.1
Csizmók, V.2
Tompa, P.3
Simon, I.4
-
33
-
-
34547588389
-
PrDOS: Prediction of disordered protein regions from amino acid sequence
-
Ishida, T., and Kinoshita, K. (2007) PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res. 35, W460-W464
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Ishida, T.1
Kinoshita, K.2
-
34
-
-
70349996473
-
ANCHOR:web server for predicting protein binding regions in disordered proteins
-
Dosztányi, Z., Mészaŕos, B., and Simon, I. (2009)ANCHOR:web server for predicting protein binding regions in disordered proteins. Bioinformatics 25, 2745-2746
-
(2009)
Bioinformatics
, vol.25
, pp. 2745-2746
-
-
Dosztányi, Z.1
Mészaŕos, B.2
Simon, I.3
-
35
-
-
77949328500
-
The mysterious unfoldome: Structureless, underappreciated, yet vital part of any given proteome
-
Uversky, V. N. (2010) The mysterious unfoldome: structureless, underappreciated, yet vital part of any given proteome. J. Biomed. Biotechnol. 2010, 568068
-
(2010)
J. Biomed. Biotechnol.
, vol.2010
, pp. 568068
-
-
Uversky, V.N.1
-
37
-
-
2942755937
-
Purification and characterisation of a soluble N-terminal fragment of the breast cancer susceptibility protein BRCA1
-
Sturdy, A., Naseem, R., and Webb, M. (2004) Purification and characterisation of a soluble N-terminal fragment of the breast cancer susceptibility protein BRCA1. J. Mol. Biol. 340, 469-475
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 469-475
-
-
Sturdy, A.1
Naseem, R.2
Webb, M.3
-
38
-
-
33646249820
-
Mapping and conformational characterization of the DNA-binding region of the breast cancer susceptibility protein BRCA1
-
Naseem, R., Sturdy, A., Finch, D., Jowitt, T., and Webb, M. (2006) Mapping and conformational characterization of the DNA-binding region of the breast cancer susceptibility protein BRCA1. Biochem. J. 395, 529-535
-
(2006)
Biochem. J.
, vol.395
, pp. 529-535
-
-
Naseem, R.1
Sturdy, A.2
Finch, D.3
Jowitt, T.4
Webb, M.5
-
39
-
-
0032079906
-
DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1)
-
Grasser, K. D., Teo, S. H., Lee, K. B., Broadhurst, R. W., Rees, C., Hardman, C. H., and Thomas, J. O. (1998) DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253, 787-795
-
(1998)
Eur. J. Biochem.
, vol.253
, pp. 787-795
-
-
Grasser, K.D.1
Teo, S.H.2
Lee, K.B.3
Broadhurst, R.W.4
Rees, C.5
Hardman, C.H.6
Thomas, J.O.7
-
40
-
-
42449148710
-
A critical role in structure-specificDNAbinding for the acetylatable lysine residues in HMGB1
-
Assenberg, R., Webb, M., Connolly, E., Stott, K., Watson, M., Hobbs, J., and Thomas, J. O. (2008) A critical role in structure-specificDNAbinding for the acetylatable lysine residues in HMGB1. Biochem. J. 411, 553-561
-
(2008)
Biochem. J.
, vol.411
, pp. 553-561
-
-
Assenberg, R.1
Webb, M.2
Connolly, E.3
Stott, K.4
Watson, M.5
Hobbs, J.6
Thomas, J.O.7
-
41
-
-
0029762817
-
Inverted repeats, stem-loops, and cruciforms: Significance for initiation of DNA replication
-
Pearson, C. E., Zorbas, H., Price, G. B., and Zannis-Hadjopoulos, M. (1996) Inverted repeats, stem-loops, and cruciforms: significance for initiation of DNA replication. J. Cell. Biochem. 63, 1-22
-
(1996)
J. Cell. Biochem.
, vol.63
, pp. 1-22
-
-
Pearson, C.E.1
Zorbas, H.2
Price, G.B.3
Zannis-Hadjopoulos, M.4
|