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Volumn 64, Issue 6, 2015, Pages 1104-1120

Selecting question-specific genes to reduce incongruence in phylogenomics: A case study of jawed vertebrate backbone phylogeny

Author keywords

phylogenetic signal; Phylogenomic; systematic bias; vertebrates

Indexed keywords

ANATOMY AND HISTOLOGY; ANIMAL; CLASSIFICATION; GENETICS; GENOMICS; PHYLOGENY; PROCEDURES; SPINE; VERTEBRATE;

EID: 84946104456     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syv059     Document Type: Article
Times cited : (94)

References (81)
  • 3
    • 84883482283 scopus 로고    scopus 로고
    • Naive binning improves phylogenomic analyses
    • Bayzid M.S., Warnow T. (2013). Naive binning improves phylogenomic analyses. Bioinformatics 29: 2277-2284
    • (2013) Bioinformatics , vol.29 , pp. 2277-2284
    • Bayzid, M.S.1    Warnow, T.2
  • 5
    • 84894596325 scopus 로고    scopus 로고
    • Conserved genes, sampling error, and phylogenomic inference
    • Betancur-R R., Naylor G., Ortí G. (2014). Conserved genes, sampling error, and phylogenomic inference. Syst. Biol. 63: 257-262
    • (2014) Syst. Biol , vol.63 , pp. 257-262
    • Betancur-R, R.1    Naylor, G.2    Ortí, G.3
  • 6
    • 84905657657 scopus 로고    scopus 로고
    • Phylogenomics resolves a spider backbone phylogeny and rejects a prevailing paradigm for orb web evolution
    • Bond J.E., Garrison N.L., Hamilton C.A., Godwin R.L., Hedin M., Agnarsson I. (2014). Phylogenomics resolves a spider backbone phylogeny and rejects a prevailing paradigm for orb web evolution. Curr. Biol. 24: 1765-1771
    • (2014) Curr. Biol , vol.24 , pp. 1765-1771
    • Bond, J.E.1    Garrison, N.L.2    Hamilton, C.A.3    Godwin, R.L.4    Hedin, M.5    Agnarsson, I.6
  • 7
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17: 540-552
    • (2000) Mol. Biol. Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 8
    • 84864249563 scopus 로고    scopus 로고
    • Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (archosauria
    • Chiari Y., Cahais V., Galtier N., Delsuc F. (2012). Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria). BMC Biol. 10: 65
    • (2012) BMC Biol , vol.10 , pp. 65
    • Chiari, Y.1    Cahais, V.2    Galtier, N.3    Delsuc, F.4
  • 9
    • 22844439075 scopus 로고    scopus 로고
    • Choosing the best genes for the job: The case for stationary genes in genome-scale phylogenetics
    • Collins T.M., Fedrigo O., Naylor G.J.P. (2005). Choosing the best genes for the job: The case for stationary genes in genome-scale phylogenetics. Syst. Biol. 54: 493-500
    • (2005) Syst. Biol , vol.54 , pp. 493-500
    • Collins, T.M.1    Fedrigo, O.2    Naylor, G.J.P.3
  • 10
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan J.H., Rosenberg N.A. (2009). Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 24: 332-340
    • (2009) Trends Ecol. Evol , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 12
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F., Brinkmann H., Philippe H. (2005). Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6: 361-375
    • (2005) Nat. Rev. Genet , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • Muscle: Multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 15
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging
    • Edwards S.V. (2009). Is a new and general theory of molecular systematics emerging?. Evolution 63: 1-19
    • (2009) Evolution , vol.63 , pp. 1-19
    • Edwards, S.V.1
  • 17
    • 84879162598 scopus 로고    scopus 로고
    • A phylogenomic perspective on the radiation of ray-finned fishes based upon targeted sequencing of ultraconserved elements (uces
    • Faircloth B.C., Sorenson L., Santini F., Alfaro M.E. (2013) A phylogenomic perspective on the radiation of ray-finned fishes based upon targeted sequencing of ultraconserved elements (UCEs). PLoS One 8: e65923
    • (2013) PLoS One , vol.8 , pp. e65923
    • Faircloth, B.C.1    Sorenson, L.2    Santini, F.3    Alfaro, M.E.4
  • 19
    • 84868678250 scopus 로고    scopus 로고
    • Aphylogenomic approach to vertebrate phylogeny supports a turtle-Archosaur affinity and a possible paraphyletic lissamphibia
    • Fong J., Brown J., Fujita M., Boussau B. (2012). Aphylogenomic approach to vertebrate phylogeny supports a Turtle-Archosaur affinity and a possible paraphyletic lissamphibia. PLoS One 7: e48990
    • (2012) PLoS One , vol.7 , pp. e48990
    • Fong, J.1    Brown, J.2    Fujita, M.3    Boussau, B.4
  • 20
    • 84870431038 scopus 로고    scopus 로고
    • Cd-hit: Accelerated for clustering the next-generation sequencing data
    • Fu L.M., Niu B.F., Zhu Z.W., Wu S.T., Li W.Z. (2012). CD-HIT: Accelerated for clustering the next-generation sequencing data. Bioinformatics 28: 3150-3152
    • (2012) Bioinformatics , vol.28 , pp. 3150-3152
    • Fu, L.M.1    Niu, B.F.2    Zhu, Z.W.3    Wu, S.T.4    Li, W.Z.5
  • 21
    • 0242268536 scopus 로고    scopus 로고
    • Evolution: Ending incongruence
    • Gee H. (2003). Evolution: ending incongruence. Nature 425: 782
    • (2003) Nature , vol.425 , pp. 782
    • Gee, H.1
  • 22
    • 80051688000 scopus 로고    scopus 로고
    • Field guide to next-generation DNA sequencers
    • Glenn T. (2011). Field guide to next-generation Dna sequencers. Mol. Ecol. Res. 11: 759-769
    • (2011) Mol. Ecol. Res , vol.11 , pp. 759-769
    • Glenn, T.1
  • 25
    • 78649382339 scopus 로고    scopus 로고
    • Mammalian evolution may not be strictly bifurcating
    • Hallström B.M., Janke A. (2010). Mammalian evolution may not be strictly bifurcating. Mol. Biol. Evol. 27: 2804-2816
    • (2010) Mol. Biol. Evol , vol.27 , pp. 2804-2816
    • Hallström, B.M.1    Janke, A.2
  • 27
    • 70350495471 scopus 로고    scopus 로고
    • Vertebrates (vertebrata)
    • Hedges SB, Kumar S, editors. New York: Oxford University Press
    • Hedges SB. (2009). Vertebrates (vertebrata). In: Hedges SB, Kumar S, editors. The timetree of life. New York: Oxford University Press. p. 309-314
    • (2009) The Timetree of Life , pp. 309-314
    • Hedges, S.B.1
  • 28
    • 0034904214 scopus 로고    scopus 로고
    • A mitogenomic perspective on the basal teleostean phylogeny: Resolving higherlevel relationships with longer DNA sequences
    • Inoue J.G., Miya M., Tsukamoto K., Nishida M. (2001) A mitogenomic perspective on the basal teleostean phylogeny: Resolving higherlevel relationships with longer Dna sequences. Mol. Phylogenet. Evol. 20: 275-285
    • (2001) Mol. Phylogenet. Evol , vol.20 , pp. 275-285
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 33
    • 84884592480 scopus 로고    scopus 로고
    • Identifying localized biases in large datasets: A case study using the avian tree of life
    • Kimball R.T., Wang N., Heimer-McGinn V., Ferguson C., Braun E.L. (2013). Identifying localized biases in large datasets: A case study using the avian tree of life. Mol. Phylogenet. Evol. 69: 1021-1032
    • (2013) Mol. Phylogenet. Evol , vol.69 , pp. 1021-1032
    • Kimball, R.T.1    Wang, N.2    Heimer-McGinn, V.3    Ferguson, C.4    Braun, E.L.5
  • 34
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of longbranch attraction artefacts in the animal phylogeny using a siteheterogeneous model
    • Lartillot N., Brinkmann H., Philippe H. (2007). Suppression of longbranch attraction artefacts in the animal phylogeny using a siteheterogeneous model. BMC Evol. Biol. 7: S4
    • (2007) BMC Evol. Biol , vol.7 , pp. S4
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 35
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le S., Gascuel O. (2008). An improved general amino acid replacement matrix. Mol. Biol. Evol. 25: 1307-1320
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1307-1320
    • Le, S.1    Gascuel, O.2
  • 36
    • 0027564167 scopus 로고
    • A 28s rrna-based phylogeny of the gnathostomes: First steps in the analysis of conflict and congruence with morphologically based cladograms
    • Lê H.L., Lecointre G., Perasso R. (1993) A 28S rRNA-based phylogeny of the gnathostomes: First steps in the analysis of conflict and congruence with morphologically based cladograms. Mol. Phylogenet. Evol. 2: 31-51
    • (1993) Mol. Phylogenet. Evol , vol.2 , pp. 31-51
    • Lê, H.L.1    Lecointre, G.2    Perasso, R.3
  • 37
    • 84881508358 scopus 로고    scopus 로고
    • One thoUSAnd two hundred ninety nuclear genes from a genome-wide survey support lungfishes as the sister group of tetrapods
    • Liang D., Shen X.X., Zhang P. (2013). One thoUSAnd two hundred ninety nuclear genes from a genome-wide survey support lungfishes as the sister group of tetrapods. Mol. Biol. Evol. 30: 1803-1807
    • (2013) Mol. Biol. Evol , vol.30 , pp. 1803-1807
    • Liang, D.1    Shen, X.X.2    Zhang, P.3
  • 38
    • 77957686501 scopus 로고    scopus 로고
    • A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
    • Liu L., Yu L., Edwards S.V. (2010) A maximum pseudo-likelihood approach for estimating species trees under the coalescent model. BMC Evol. Biol. 10: 302
    • (2010) BMC Evol. Biol , vol.10 , pp. 302
    • Liu, L.1    Yu, L.2    Edwards, S.V.3
  • 39
    • 70349425459 scopus 로고    scopus 로고
    • Estimating species phylogenies using coalescence times among sequences
    • Liu L., Yu L., Pearl D.K., Edwards S.V. (2009). Estimating species phylogenies using coalescence times among sequences. Syst. Biol. 58: 468-477
    • (2009) Syst. Biol , vol.58 , pp. 468-477
    • Liu, L.1    Yu, L.2    Pearl, D.K.3    Edwards, S.V.4
  • 40
    • 84861358284 scopus 로고    scopus 로고
    • Retroposon insertion patterns of neoavian birds: Strong evidence for an extensive incomplete lineage sorting era
    • Matzke A., Churakov G., Berkes P., Arms E.M., Kelsey D., Brosius J., Kriegs J.O., Schmitz J. (2012). Retroposon insertion patterns of neoavian birds: Strong evidence for an extensive incomplete lineage sorting era. Mol. Biol. Evol. 29: 1497-1501
    • (2012) Mol. Biol. Evol , vol.29 , pp. 1497-1501
    • Matzke, A.1    Churakov, G.2    Berkes, P.3    Arms, E.M.4    Kelsey, D.5    Brosius, J.6    Kriegs, J.O.7    Schmitz, J.8
  • 41
    • 84859530730 scopus 로고    scopus 로고
    • Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny whencombined with species-Tree analysis
    • McCormack J.E., Faircloth B.C., Crawford N.G., Gowaty P.A., Brumfield R.T., Glenn T.C (2012). Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny whencombined with species-Tree analysis.GenomeRes. 22: 746-754
    • (2012) GenomeRes , vol.22 , pp. 746-754
    • McCormack, J.E.1    Faircloth, B.C.2    Crawford, N.G.3    Gowaty, P.A.4    Brumfield, R.T.5    Glenn, T.C.6
  • 42
    • 84873860010 scopus 로고    scopus 로고
    • A phylogeny of birds based on over 1, 500 loci collected by target enrichment and high-Throughput sequencing
    • McCormack J.E., Harvey M.G., Faircloth B.C., Crawford N.G., Glenn T.C., Brumfield R.T. (2013) A phylogeny of birds based on over 1, 500 loci collected by target enrichment and high-Throughput sequencing. PLoS One 8: e54848
    • (2013) PLoS One , vol.8 , pp. e54848
    • McCormack, J.E.1    Harvey, M.G.2    Faircloth, B.C.3    Crawford, N.G.4    Glenn, T.C.5    Brumfield, R.T.6
  • 48
  • 49
    • 0002994515 scopus 로고
    • Review of ichthyodectiform and other mesozoic teleost fishes and the theory and practice of classifying fossils
    • Patterson C., Rosen D.E. (1977). Review of ichthyodectiform and other Mesozoic teleost fishes and the theory and practice of classifying fossils. Bull. Am. Mus. Nat. Hist. 158: 85-172
    • (1977) Bull. Am. Mus. Nat. Hist , vol.158 , pp. 85-172
    • Patterson, C.1    Rosen, D.E.2
  • 50
    • 33644853817 scopus 로고    scopus 로고
    • Mitochondrial molecular clocks and the origin of the major otocephalan clades (pisces: Teleostei): A new insight
    • Peng Z., He S., Wang J., Wang W., Diogo R. (2006). Mitochondrial molecular clocks and the origin of the major Otocephalan clades (Pisces: Teleostei): A new insight. Gene 370: 113-124
    • (2006) Gene , vol.370 , pp. 113-124
    • Peng, Z.1    He, S.2    Wang, J.3    Wang, W.4    Diogo, R.5
  • 51
    • 77950859934 scopus 로고    scopus 로고
    • Teleost fishes (teleostei)
    • Hedges S.B., Kumar S., editors.NewYork: OxfordUniversity Press
    • Peng Z., Diogo R., He S. (2009). Teleost fishes (Teleostei). In: Hedges S.B., Kumar S., editors. The timetree of life.NewYork: OxfordUniversity Press. p. 335-338
    • (2009) The Timetree of Life , pp. 335-338
    • Peng, Z.1    Diogo, R.2    He, S.3
  • 55
    • 84555190271 scopus 로고    scopus 로고
    • Difficult phylogenetic questions?. More data, maybe; Better methods, certainly
    • Philippe H., Roure B. (2011). Difficult phylogenetic questions?. More data, maybe; better methods, certainly. BMC Biol. 9: 91
    • (2011) BMC Biol , vol.9 , pp. 91
    • Philippe, H.1    Roure, B.2
  • 58
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A., Williams B.L., King N., Carroll S.B. (2003). Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 59
    • 84883229050 scopus 로고    scopus 로고
    • Less is more in mammalian phylogenomics: At-rich genes minimize tree conflicts and unravel the root of placental mammals
    • Romiguier J., Ranwez V., Delsuc F., Galtier N., Douzery E.J.P. (2013). Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals. Mol. Biol. Evol. 30: 2134-2144
    • (2013) Mol. Biol. Evol , vol.30 , pp. 2134-2144
    • Romiguier, J.1    Ranwez, V.2    Delsuc, F.3    Galtier, N.4    Douzery, E.J.P.5
  • 60
    • 84871842306 scopus 로고    scopus 로고
    • Impact of missing data on phylogenies inferred from empirical phylogenomic data sets
    • Roure B., Baurain D., Philippe H. (2013). Impact of missing data on phylogenies inferred from empirical phylogenomic data sets. Mol. Biol. Evol. 30: 197-214
    • (2013) Mol. Biol. Evol , vol.30 , pp. 197-214
    • Roure, B.1    Baurain, D.2    Philippe, H.3
  • 61
    • 84878113118 scopus 로고    scopus 로고
    • Inferring ancient divergences requires genes with strong phylogenetic signals
    • Salichos L., Rokas A. (2013). Inferring ancient divergences requires genes with strong phylogenetic signals. Nature 497: 327-331
    • (2013) Nature , vol.497 , pp. 327-331
    • Salichos, L.1    Rokas, A.2
  • 62
    • 84898641369 scopus 로고    scopus 로고
    • Novel information theorybased measures for quantifying incongruence among phylogenetic trees
    • Salichos L., Stamatakis A., Rokas A. (2014). Novel information theorybased measures for quantifying incongruence among phylogenetic trees. Mol. Biol. Evol. 31: 1261-1271
    • (2014) Mol. Biol. Evol , vol.31 , pp. 1261-1271
    • Salichos, L.1    Stamatakis, A.2    Rokas, A.3
  • 63
    • 70349201094 scopus 로고    scopus 로고
    • Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes
    • Santini F., Harmon L.J., Carnevale G., Alfaro M.E. (2009). Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evol. Biol. 9: 194
    • (2009) BMC Evol. Biol , vol.9 , pp. 194
    • Santini, F.1    Harmon, L.J.2    Carnevale, G.3    Alfaro, M.E.4
  • 64
    • 84876517039 scopus 로고    scopus 로고
    • Missing data and influential sites: Choice of sites for phylogenetic analysis can be as important as taxon sampling and model choice
    • Shavit Grievink L., Penny D., Holland B.R. (2013). Missing data and influential sites: Choice of sites for phylogenetic analysis can be as important as taxon sampling and model choice. Genome Biol. Evol. 5: 681-687
    • (2013) Genome Biol. Evol , vol.5 , pp. 681-687
    • Shavit Grievink, L.1    Penny, D.2    Holland, B.R.3
  • 66
    • 81855206231 scopus 로고    scopus 로고
    • Multiple genome alignments facilitate development of npcl markers: A case study of tetrapod phylogeny focusing on the position of turtles
    • Shen X.X., Liang D., Wen J.Z., Zhang P. (2011). Multiple genome alignments facilitate development of NPCL markers: A case study of tetrapod phylogeny focusing on the position of turtles. Mol. Biol. Evol. 28: 3237-3252
    • (2011) Mol. Biol. Evol , vol.28 , pp. 3237-3252
    • Shen, X.X.1    Liang, D.2    Wen, J.Z.3    Zhang, P.4
  • 67
    • 3843150595 scopus 로고    scopus 로고
    • Relative characterstate space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters
    • Simmons M.P., Carr T.G., O?Neill K. (2004). Relative characterstate space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters. Mol. Phylogenet. Evol. 32: 913-926
    • (2004) Mol. Phylogenet. Evol , vol.32 , pp. 913-926
    • Simmons, M.P.1    Carr, T.G.2    Oneill, K.3
  • 69
    • 84866289853 scopus 로고    scopus 로고
    • Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
    • Song S., Liu L., Edwards S.V., Wu S. (2012). Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proc. Natl. Acad. Sci. USA. 109: 14942-14947
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 14942-14947
    • Song, S.1    Liu, L.2    Edwards, S.V.3    Wu, S.4
  • 70
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the raxml web servers
    • Stamatakis A., Diego S., Jolla L. (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57: 758-771
    • (2008) Syst. Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Diego, S.2    Jolla, L.3
  • 71
    • 33750403801 scopus 로고    scopus 로고
    • Raxml-VI-hpc: Maximum likelihood-based phylogenetic analyses with thoUSAnds of taxa and mixed models
    • Stamatakis A. (2006). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thoUSAnds of taxa and mixed models. Bioinformatics 22: 2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 72
    • 84946130803 scopus 로고    scopus 로고
    • Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
    • Tan G., Muffato M., Ledergerber C., Herrero J., Goldman N., Gil M., Dessimoz C. (2015). Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference. Syst. Biol. 1-14
    • (2015) Syst. Biol , pp. 1-14
    • Tan, G.1    Muffato, M.2    Ledergerber, C.3    Herrero, J.4    Goldman, N.5    Gil, M.6    Dessimoz, C.7
  • 73
    • 77951182221 scopus 로고    scopus 로고
    • Rapid progress on the vertebrate tree of life
    • Thomson R.C., Shaffer H.B. (2010). Rapid progress on the vertebrate tree of life. BMC Biol. 8: 19
    • (2010) BMC Biol , vol.8 , pp. 19
    • Thomson, R.C.1    Shaffer, H.B.2
  • 74
    • 84865202478 scopus 로고    scopus 로고
    • Phylogenetic signal and noise: Predicting the power of a data set to resolve phylogeny
    • Townsend J.P., Su Z., Tekle Y.I. (2012). Phylogenetic signal and noise: Predicting the power of a data set to resolve phylogeny. Syst. Biol. 61: 835-849
    • (2012) Syst. Biol , vol.61 , pp. 835-849
    • Townsend, J.P.1    Su, Z.2    Tekle, Y.I.3
  • 75
    • 84889090318 scopus 로고    scopus 로고
    • Phylogenomic analyses elucidate the evolutionary relationships of bats
    • Tsagkogeorga G., Parker J., Stupka E., Cotton J.A., Rossiter S.J. (2013). Phylogenomic analyses elucidate the evolutionary relationships of bats. Curr. Biol. 23: 2262-2267
    • (2013) Curr. Biol , vol.23 , pp. 2262-2267
    • Tsagkogeorga, G.1    Parker, J.2    Stupka, E.3    Cotton, J.A.4    Rossiter, S.J.5
  • 77
    • 84996563564 scopus 로고    scopus 로고
    • Evidence for gc-biased gene conversion as a driver of betweenlineage differences in avian base composition
    • Weber C.C., Boussau B., Romiguier J., Jarvis E.D., Ellegren H. (2014). Evidence for GC-biased gene conversion as a driver of betweenlineage differences in avian base composition. Genome Biol. 15: 549
    • (2014) Genome Biol , vol.15 , pp. 549
    • Weber, C.C.1    Boussau, B.2    Romiguier, J.3    Jarvis, E.D.4    Ellegren, H.5
  • 78
    • 80052006478 scopus 로고    scopus 로고
    • Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data
    • Wiens J.J., Morrill M.C. (2011). Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data. Syst. Biol. 60: 719-731
    • (2011) Syst. Biol , vol.60 , pp. 719-731
    • Wiens, J.J.1    Morrill, M.C.2
  • 79
    • 84865026977 scopus 로고    scopus 로고
    • Highly incomplete taxa can rescue phylogenetic analyses from the negative impacts of limited taxon sampling
    • Wiens J.J., Tiu J. (2012). Highly incomplete taxa can rescue phylogenetic analyses from the negative impacts of limited taxon sampling. PLoS One 7: e42925
    • (2012) PLoS One , vol.7 , pp. e42925
    • Wiens, J.J.1    Tiu, J.2
  • 80
    • 84864564920 scopus 로고    scopus 로고
    • Highly conserved lowcopy nuclear genes as effective markers for phylogenetic analyses in angiosperms
    • Zhang N., Zeng L., Shan H., Ma H. (2012). Highly conserved lowcopy nuclear genes as effective markers for phylogenetic analyses in angiosperms. New Phytol. 195: 923-937
    • (2012) New Phytol , vol.195 , pp. 923-937
    • Zhang, N.1    Zeng, L.2    Shan, H.3    Ma, H.4
  • 81
    • 22844444149 scopus 로고    scopus 로고
    • Mitogenomic perspectives on the origin and phylogeny of livingamphibians
    • Zhang P., Zhou H., Chen Y.Q., Liu Y.F., Qu L.H. (2005). Mitogenomic perspectives on the origin and phylogeny of livingamphibians. Syst. Biol. 54: 391-400
    • (2005) Syst. Biol , vol.54 , pp. 391-400
    • Zhang, P.1    Zhou, H.2    Chen, Y.Q.3    Liu, Y.F.4    Qu, L.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.