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Volumn 148, Issue , 2015, Pages 134-144

QSAR models and scaffold-based analysis of non-nucleoside HIV RT inhibitors

Author keywords

HIV reverse transcriptase (HIV RT); Matched molecular pair analysis (MMPA); Molecular docking; Non nucleoside reverse transcriptase (NNRT) pyrimidine derivatives; Quantitative structure activity relationship (QSAR)

Indexed keywords

MOLECULAR SCAFFOLD; NONNUCLEOSIDE REVERSE TRANSCRIPTASE INHIBITOR; RNA DIRECTED DNA POLYMERASE;

EID: 84944212427     PISSN: 01697439     EISSN: 18733239     Source Type: Journal    
DOI: 10.1016/j.chemolab.2015.09.011     Document Type: Article
Times cited : (17)

References (67)
  • 1
    • 84944221844 scopus 로고    scopus 로고
    • WHO's Global Health Observatory (Access date 20/06/2015).
    • WHO's Global Health Observatory (Access date 20/06/2015). http://www.who.int/gho/hiv/en/.
  • 2
    • 2342595186 scopus 로고    scopus 로고
    • Nonnucleoside inhibitors of HIV-1 reverse transcriptase: from the biology of reverse transcription to molecular design
    • Tronchet J.M., Seman M. Nonnucleoside inhibitors of HIV-1 reverse transcriptase: from the biology of reverse transcription to molecular design. Curr. Top. Med. Chem. 2003, 3:1496-1511.
    • (2003) Curr. Top. Med. Chem. , vol.3 , pp. 1496-1511
    • Tronchet, J.M.1    Seman, M.2
  • 3
    • 84862580827 scopus 로고    scopus 로고
    • In search of a treatment for HIV--current therapies and the role of non-nucleoside reverse transcriptase inhibitors (NNRTIs)
    • Reynolds C., de Koning C.B., Pelly S.C., van Otterlo W.A., Bode M.L. In search of a treatment for HIV--current therapies and the role of non-nucleoside reverse transcriptase inhibitors (NNRTIs). Chem. Soc. Rev. 2012, 41:4657-4670.
    • (2012) Chem. Soc. Rev. , vol.41 , pp. 4657-4670
    • Reynolds, C.1    de Koning, C.B.2    Pelly, S.C.3    van Otterlo, W.A.4    Bode, M.L.5
  • 4
    • 84939885171 scopus 로고    scopus 로고
    • Quantitative structure-activity relationship (QSAR) studies as strategic approach in drug discovery
    • Patel H.M., Noolvi M.N., Sharma P., Jaiswal V., Bansal S., Lohan S., et al. Quantitative structure-activity relationship (QSAR) studies as strategic approach in drug discovery. Med. Chem. Res. 2014, 23(12):4991-5007.
    • (2014) Med. Chem. Res. , vol.23 , Issue.12 , pp. 4991-5007
    • Patel, H.M.1    Noolvi, M.N.2    Sharma, P.3    Jaiswal, V.4    Bansal, S.5    Lohan, S.6
  • 6
    • 84919928142 scopus 로고    scopus 로고
    • Prediction-driven matched molecular pairs to interpret QSARs and aid the molecular optimization process
    • Sushko Y., Novotarskyi S., Korner R., Vogt J., Abdelaziz A., Tetko I.V. Prediction-driven matched molecular pairs to interpret QSARs and aid the molecular optimization process. J. Cheminform. 2014, 6:48.
    • (2014) J. Cheminform. , vol.6 , pp. 48
    • Sushko, Y.1    Novotarskyi, S.2    Korner, R.3    Vogt, J.4    Abdelaziz, A.5    Tetko, I.V.6
  • 9
    • 84870237794 scopus 로고    scopus 로고
    • Synthesis, screening and computational investigation of pentacycloundecane-peptoids as potent CSA-HIV PR inhibitors
    • Makatini M.M., Petzold K., Arvidsson P.I., Honarparvar B., Govender T., Maguire G.E.M., et al. Synthesis, screening and computational investigation of pentacycloundecane-peptoids as potent CSA-HIV PR inhibitors. Eur. J. Med. Chem. 2012, 57:459-467.
    • (2012) Eur. J. Med. Chem. , vol.57 , pp. 459-467
    • Makatini, M.M.1    Petzold, K.2    Arvidsson, P.I.3    Honarparvar, B.4    Govender, T.5    Maguire, G.E.M.6
  • 11
    • 3543104288 scopus 로고    scopus 로고
    • Artificial neural networks: non-linear QSAR studies of HEPT derivatives as HIV-1 reverse transcriptase inhibitors
    • Douali L., Villemin D., Zyad A., Cherqaoui D. Artificial neural networks: non-linear QSAR studies of HEPT derivatives as HIV-1 reverse transcriptase inhibitors. Mol. Divers. 2004, 8:1-8.
    • (2004) Mol. Divers. , vol.8 , pp. 1-8
    • Douali, L.1    Villemin, D.2    Zyad, A.3    Cherqaoui, D.4
  • 14
    • 84944210480 scopus 로고    scopus 로고
    • NIAID Division of AIDS Anti-HIV/OI/TB Therapeutics Database (Available from: chemdb.niaid.nih.gov, Access date June 2014).
    • NIAID Division of AIDS Anti-HIV/OI/TB Therapeutics Database (Available from: chemdb.niaid.nih.gov, Access date June 2014).
  • 15
    • 65649125313 scopus 로고    scopus 로고
    • Design, microwave-assisted synthesis and HIV-RT inhibitory activity of 2-(2,6-dihalophenyl)-3-(4,6-dimethyl-5-(un)substituted-pyrimidin-2-yl)thiazolidin -4-ones
    • Chen H., Bai J., Jiao L., Guo Z., Yin Q., Li X. Design, microwave-assisted synthesis and HIV-RT inhibitory activity of 2-(2,6-dihalophenyl)-3-(4,6-dimethyl-5-(un)substituted-pyrimidin-2-yl)thiazolidin -4-ones. Bioorg. Med. Chem. 2009, 17:3980-3986.
    • (2009) Bioorg. Med. Chem. , vol.17 , pp. 3980-3986
    • Chen, H.1    Bai, J.2    Jiao, L.3    Guo, Z.4    Yin, Q.5    Li, X.6
  • 16
    • 0034017027 scopus 로고    scopus 로고
    • Structure-activity relationship studies on potential non-nucleoside DABO-like inhibitors of HIV-1 reverse transcriptase
    • Costi R., Di Santo R., Artico M., Massa S., Lavecchia A., Marceddu T., et al. Structure-activity relationship studies on potential non-nucleoside DABO-like inhibitors of HIV-1 reverse transcriptase. Antivir. Chem. Chemother. 2000, 11:117-133.
    • (2000) Antivir. Chem. Chemother. , vol.11 , pp. 117-133
    • Costi, R.1    Di Santo, R.2    Artico, M.3    Massa, S.4    Lavecchia, A.5    Marceddu, T.6
  • 17
    • 77953872635 scopus 로고    scopus 로고
    • Discovery of piperidin-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-benzyl derivatives with broad potency against resistant mutant viruses
    • Kertesz D.J., Brotherton-Pleiss C., Yang M., Wang Z., Lin X., Qiu Z., et al. Discovery of piperidin-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-benzyl derivatives with broad potency against resistant mutant viruses. Bioorg. Med. Chem. Lett. 2010, 20:4215-4218.
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 4215-4218
    • Kertesz, D.J.1    Brotherton-Pleiss, C.2    Yang, M.3    Wang, Z.4    Lin, X.5    Qiu, Z.6
  • 18
    • 13844316071 scopus 로고    scopus 로고
    • 5-Alkyl-2-alkylamino-6-(2,6-difluorophenylalkyl)-3,4-dihydropyrimidin-4(3H)-ones, a new series of potent, broad-spectrum non-nucleoside reverse transcriptase inhibitors belonging to the DABO family
    • Mai A., Artico M., Ragno R., Sbardella G., Massa S., Musiu C., et al. 5-Alkyl-2-alkylamino-6-(2,6-difluorophenylalkyl)-3,4-dihydropyrimidin-4(3H)-ones, a new series of potent, broad-spectrum non-nucleoside reverse transcriptase inhibitors belonging to the DABO family. Bioorg. Med. Chem. 2005, 13:2065-2077.
    • (2005) Bioorg. Med. Chem. , vol.13 , pp. 2065-2077
    • Mai, A.1    Artico, M.2    Ragno, R.3    Sbardella, G.4    Massa, S.5    Musiu, C.6
  • 19
    • 0029095334 scopus 로고
    • Synthesis and anti-HIV-1 activity of thio analogues of dihydroalkoxybenzyloxopyrimidines
    • Mai A., Artico M., Sbardella G., Massa S., Loi A.G., Tramontano E., et al. Synthesis and anti-HIV-1 activity of thio analogues of dihydroalkoxybenzyloxopyrimidines. J. Med. Chem. 1995, 38:3258-3263.
    • (1995) J. Med. Chem. , vol.38 , pp. 3258-3263
    • Mai, A.1    Artico, M.2    Sbardella, G.3    Massa, S.4    Loi, A.G.5    Tramontano, E.6
  • 20
    • 0033602141 scopus 로고    scopus 로고
    • 5-Alkyl-2-(alkylthio)-6-(2,6-dihalophenylmethyl)-3,4-dihydropyrimidin-4(3H)-ones: novel potent and selective dihydro-alkoxy-benzyl-oxopyrimidine derivatives
    • Mai A., Artico M., Sbardella G., Massa S., Novellino E., Greco G., et al. 5-Alkyl-2-(alkylthio)-6-(2,6-dihalophenylmethyl)-3,4-dihydropyrimidin-4(3H)-ones: novel potent and selective dihydro-alkoxy-benzyl-oxopyrimidine derivatives. J. Med. Chem. 1999, 42:619-627.
    • (1999) J. Med. Chem. , vol.42 , pp. 619-627
    • Mai, A.1    Artico, M.2    Sbardella, G.3    Massa, S.4    Novellino, E.5    Greco, G.6
  • 21
    • 15444340492 scopus 로고    scopus 로고
    • Dihydro(alkylthio)(naphthylmethyl)oxopyrimidines: novel non-nucleoside reverse transcriptase inhibitors of the S-DABO series
    • Mai A., Artico M., Sbardella G., Quartarone S., Massa S., Loi A.G., et al. Dihydro(alkylthio)(naphthylmethyl)oxopyrimidines: novel non-nucleoside reverse transcriptase inhibitors of the S-DABO series. J. Med. Chem. 1997, 40:1447-1454.
    • (1997) J. Med. Chem. , vol.40 , pp. 1447-1454
    • Mai, A.1    Artico, M.2    Sbardella, G.3    Quartarone, S.4    Massa, S.5    Loi, A.G.6
  • 22
    • 0035797356 scopus 로고    scopus 로고
    • Structure-based design, synthesis, and biological evaluation of conformationally restricted novel 2-alkylthio-6-[1-(2,6-difluorophenyl)alkyl]-3,4-dihydro-5-alkylpyrimidin-4(3H)-on es as non-nucleoside inhibitors of HIV-1 reverse transcriptase
    • Mai A., Sbardella G., Artico M., Ragno R., Massa S., Novellino E., et al. Structure-based design, synthesis, and biological evaluation of conformationally restricted novel 2-alkylthio-6-[1-(2,6-difluorophenyl)alkyl]-3,4-dihydro-5-alkylpyrimidin-4(3H)-on es as non-nucleoside inhibitors of HIV-1 reverse transcriptase. J. Med. Chem. 2001, 44:2544-2554.
    • (2001) J. Med. Chem. , vol.44 , pp. 2544-2554
    • Mai, A.1    Sbardella, G.2    Artico, M.3    Ragno, R.4    Massa, S.5    Novellino, E.6
  • 23
    • 14444278270 scopus 로고    scopus 로고
    • Pyrimidine thioethers: a novel class of HIV-1 reverse transcriptase inhibitors with activity against BHAP-resistant HIV
    • Nugent R.A., Schlachter S.T., Murphy M.J., Cleek G.J., Poel T.J., Wishka D.G., et al. Pyrimidine thioethers: a novel class of HIV-1 reverse transcriptase inhibitors with activity against BHAP-resistant HIV. J. Med. Chem. 1998, 41:3793-3803.
    • (1998) J. Med. Chem. , vol.41 , pp. 3793-3803
    • Nugent, R.A.1    Schlachter, S.T.2    Murphy, M.J.3    Cleek, G.J.4    Poel, T.J.5    Wishka, D.G.6
  • 25
    • 77950861081 scopus 로고    scopus 로고
    • Synthesis and biological evaluation of novel 2-arylalkylthio-4-amino-6-benzyl pyrimidines as potent HIV-1 non-nucleoside reverse transcriptase inhibitors
    • Qin H., Liu C., Zhang J., Guo Y., Zhang S., Zhang Z., et al. Synthesis and biological evaluation of novel 2-arylalkylthio-4-amino-6-benzyl pyrimidines as potent HIV-1 non-nucleoside reverse transcriptase inhibitors. Bioorg. Med. Chem. Lett. 2010, 20:3003-3005.
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 3003-3005
    • Qin, H.1    Liu, C.2    Zhang, J.3    Guo, Y.4    Zhang, S.5    Zhang, Z.6
  • 26
    • 10744230514 scopus 로고    scopus 로고
    • Computer-aided design, synthesis, and anti-HIV-1 activity in vitro of 2-alkylamino-6-[1-(2,6-difluorophenyl)alkyl]-3,4-dihydro-5-alkylpyrimidin-4(3H)-o nes as novel potent non-nucleoside reverse transcriptase inhibitors, also active against the Y181C variant
    • Ragno R., Mai A., Sbardella G., Artico M., Massa S., Musiu C., et al. Computer-aided design, synthesis, and anti-HIV-1 activity in vitro of 2-alkylamino-6-[1-(2,6-difluorophenyl)alkyl]-3,4-dihydro-5-alkylpyrimidin-4(3H)-o nes as novel potent non-nucleoside reverse transcriptase inhibitors, also active against the Y181C variant. J. Med. Chem. 2004, 47:928-934.
    • (2004) J. Med. Chem. , vol.47 , pp. 928-934
    • Ragno, R.1    Mai, A.2    Sbardella, G.3    Artico, M.4    Massa, S.5    Musiu, C.6
  • 27
    • 4043172745 scopus 로고    scopus 로고
    • 2-(2,6-Dihalophenyl)-3-(pyrimidin-2-yl)-1,3-thiazolidin-4-ones as non-nucleoside HIV-1 reverse transcriptase inhibitors
    • Rao A., Balzarini J., Carbone A., Chimirri A., De Clercq E., Monforte A.M., et al. 2-(2,6-Dihalophenyl)-3-(pyrimidin-2-yl)-1,3-thiazolidin-4-ones as non-nucleoside HIV-1 reverse transcriptase inhibitors. Antivir. Res. 2004, 63:79-84.
    • (2004) Antivir. Res. , vol.63 , pp. 79-84
    • Rao, A.1    Balzarini, J.2    Carbone, A.3    Chimirri, A.4    De Clercq, E.5    Monforte, A.M.6
  • 28
    • 77956908369 scopus 로고    scopus 로고
    • Exploration of piperidine-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-Phenyl derivatives with broad potency against resistant mutant viruses
    • Tang G., Kertesz D.J., Yang M., Lin X., Wang Z., Li W., et al. Exploration of piperidine-4-yl-aminopyrimidines as HIV-1 reverse transcriptase inhibitors. N-Phenyl derivatives with broad potency against resistant mutant viruses. Bioorg. Med. Chem. Lett. 2010, 20:6020-6023.
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 6020-6023
    • Tang, G.1    Kertesz, D.J.2    Yang, M.3    Lin, X.4    Wang, Z.5    Li, W.6
  • 29
    • 84903308128 scopus 로고    scopus 로고
    • Synthesis and biological evaluation of novel 2-arylalkylthio-5-iodine-6-substituted-benzyl-pyrimidine-4(3H)-ones as potent HIV-1 non-nucleoside reverse transcriptase inhibitors
    • Zhang L., Tang X., Cao Y., Wu S., Zhang Y., Zhao J., et al. Synthesis and biological evaluation of novel 2-arylalkylthio-5-iodine-6-substituted-benzyl-pyrimidine-4(3H)-ones as potent HIV-1 non-nucleoside reverse transcriptase inhibitors. Molecules 2014, 19:7104-7121.
    • (2014) Molecules , vol.19 , pp. 7104-7121
    • Zhang, L.1    Tang, X.2    Cao, Y.3    Wu, S.4    Zhang, Y.5    Zhao, J.6
  • 31
    • 80051551297 scopus 로고    scopus 로고
    • Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information
    • Sushko I., Novotarskyi S., Korner R., Pandey A.K., Rupp M., Teetz W., et al. Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information. J. Comput. Aided Mol. Des. 2011, 25:533-554.
    • (2011) J. Comput. Aided Mol. Des. , vol.25 , pp. 533-554
    • Sushko, I.1    Novotarskyi, S.2    Korner, R.3    Pandey, A.K.4    Rupp, M.5    Teetz, W.6
  • 32
    • 0026540533 scopus 로고
    • HIV-1 reverse transcriptase inhibition by a dipyridodiazepinone derivative: BI-RG-587
    • Tramontano E., Cheng Y.C. HIV-1 reverse transcriptase inhibition by a dipyridodiazepinone derivative: BI-RG-587. Biochem. Pharmacol. 1992, 43:1371-1376.
    • (1992) Biochem. Pharmacol. , vol.43 , pp. 1371-1376
    • Tramontano, E.1    Cheng, Y.C.2
  • 33
    • 0026724892 scopus 로고
    • Kinetics of inhibition of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase by the novel HIV-1-specific nucleoside analogue [2',5'-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]-3'-spiro-5'- (4'-amino-1',2'-oxathiole-2'
    • Balzarini J., Perez-Perez M.J., San-Felix A., Camarasa M.J., Bathurst I.C., Barr P.J., et al. Kinetics of inhibition of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase by the novel HIV-1-specific nucleoside analogue [2',5'-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]-3'-spiro-5'- (4'-amino-1',2'-oxathiole-2',2'-dioxide)thymine (TSAO-T). J. Biol. Chem. 1992, 267:11831-11838.
    • (1992) J. Biol. Chem. , vol.267 , pp. 11831-11838
    • Balzarini, J.1    Perez-Perez, M.J.2    San-Felix, A.3    Camarasa, M.J.4    Bathurst, I.C.5    Barr, P.J.6
  • 34
  • 35
    • 84903198682 scopus 로고    scopus 로고
    • Design and synthesis of a new series of modified CH-diarylpyrimidines as drug-resistant HIV non-nucleoside reverse transcriptase inhibitors
    • Meng G., Liu Y., Zheng A., Chen F., Chen W., De Clercq E., et al. Design and synthesis of a new series of modified CH-diarylpyrimidines as drug-resistant HIV non-nucleoside reverse transcriptase inhibitors. Eur. J. Med. Chem. 2014, 82:600-611.
    • (2014) Eur. J. Med. Chem. , vol.82 , pp. 600-611
    • Meng, G.1    Liu, Y.2    Zheng, A.3    Chen, F.4    Chen, W.5    De Clercq, E.6
  • 36
    • 84907214176 scopus 로고    scopus 로고
    • Design, synthesis and anti-HIV evaluation of novel diarylnicotinamide derivatives (DANAs) targeting the entrance channel of the NNRTI binding pocket through structure-guided molecular hybridization
    • Liu Z., Chen W., Zhan P., De Clercq E., Pannecouque C., Liu X. Design, synthesis and anti-HIV evaluation of novel diarylnicotinamide derivatives (DANAs) targeting the entrance channel of the NNRTI binding pocket through structure-guided molecular hybridization. Eur. J. Med. Chem. 2014, 87:52-62.
    • (2014) Eur. J. Med. Chem. , vol.87 , pp. 52-62
    • Liu, Z.1    Chen, W.2    Zhan, P.3    De Clercq, E.4    Pannecouque, C.5    Liu, X.6
  • 37
    • 84878004314 scopus 로고    scopus 로고
    • Molecular design, synthesis and biological evaluation of BP-O-DAPY and O-DAPY derivatives as non-nucleoside HIV-1 reverse transcriptase inhibitors
    • Yang S., Pannecouque C., Daelemans D., Ma X.D., Liu Y., Chen F.E., et al. Molecular design, synthesis and biological evaluation of BP-O-DAPY and O-DAPY derivatives as non-nucleoside HIV-1 reverse transcriptase inhibitors. Eur. J. Med. Chem. 2013, 65:134-143.
    • (2013) Eur. J. Med. Chem. , vol.65 , pp. 134-143
    • Yang, S.1    Pannecouque, C.2    Daelemans, D.3    Ma, X.D.4    Liu, Y.5    Chen, F.E.6
  • 38
    • 58149402899 scopus 로고    scopus 로고
    • Associative neural network
    • Tetko I.V. Associative neural network. Methods Mol. Biol. 2008, 458:185-202.
    • (2008) Methods Mol. Biol. , vol.458 , pp. 185-202
    • Tetko, I.V.1
  • 39
    • 0036557849 scopus 로고    scopus 로고
    • Neural network studies. 4. Introduction to associative neural networks
    • Tetko I.V. Neural network studies. 4. Introduction to associative neural networks. J. Chem. Inf. Comput. Sci. 2002, 42:717-728.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 717-728
    • Tetko, I.V.1
  • 40
    • 0025593679 scopus 로고
    • Supersab-fast adaptive back propagation with good scaling properties
    • 3:561-3:573
    • Tollenaere T. Supersab-fast adaptive back propagation with good scaling properties. Neural Netw. 1990, 3:3:561-3:573.
    • (1990) Neural Netw. , vol.3
    • Tollenaere, T.1
  • 42
    • 0028466540 scopus 로고
    • Comparison of automatic three-dimensional model builders using 639 x-ray structures
    • Jens Sadowski J.G., Klebe Gerhard Comparison of automatic three-dimensional model builders using 639 x-ray structures. J. Chem. Inf. Model. 1994, 34:701-1028.
    • (1994) J. Chem. Inf. Model. , vol.34 , pp. 701-1028
    • Jens Sadowski, J.G.1    Klebe, G.2
  • 43
    • 0034265479 scopus 로고    scopus 로고
    • Unsupervised forward selection: a method for eliminating redundant variables
    • Whitley D.C., Ford M.G., Livingstone D.J. Unsupervised forward selection: a method for eliminating redundant variables. J. Chem. Inf. Comput. Sci. 2000, 40:1160-1168.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 1160-1168
    • Whitley, D.C.1    Ford, M.G.2    Livingstone, D.J.3
  • 44
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • Breiman L. Bagging predictors. Mach. Learn. 1996, 24:123-140.
    • (1996) Mach. Learn. , vol.24 , pp. 123-140
    • Breiman, L.1
  • 45
    • 84883238632 scopus 로고    scopus 로고
    • Development of dimethyl sulfoxide solubility models using 163,000 molecules: using a domain applicability metric to select more reliable predictions
    • Tetko I.V., Novotarskyi S., Sushko I., Ivanov V., Petrenko A.E., Dieden R., et al. Development of dimethyl sulfoxide solubility models using 163,000 molecules: using a domain applicability metric to select more reliable predictions. J. Chem. Inf. Model. 2013, 53:1990-2000.
    • (2013) J. Chem. Inf. Model. , vol.53 , pp. 1990-2000
    • Tetko, I.V.1    Novotarskyi, S.2    Sushko, I.3    Ivanov, V.4    Petrenko, A.E.5    Dieden, R.6
  • 46
    • 0029976422 scopus 로고    scopus 로고
    • Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors
    • Hopkins A.L., Ren J., Esnouf R.M., Willcox B.E., Jones E.Y., Ross C., et al. Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors. J. Med. Chem. 1996, 39:1589-1600.
    • (1996) J. Med. Chem. , vol.39 , pp. 1589-1600
    • Hopkins, A.L.1    Ren, J.2    Esnouf, R.M.3    Willcox, B.E.4    Jones, E.Y.5    Ross, C.6
  • 49
    • 35448937584 scopus 로고    scopus 로고
    • Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements
    • Stewart J.J. Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements. J. Mol. Model. 2007, 13:1173-1213.
    • (2007) J. Mol. Model. , vol.13 , pp. 1173-1213
    • Stewart, J.J.1
  • 50
    • 84944203375 scopus 로고    scopus 로고
    • Forli S. Raccoon|AutoDock VS: an automated tool for preparing AutoDock virtual screenings, (accessed 01/12/2014).
    • Forli S. Raccoon|AutoDock VS: an automated tool for preparing AutoDock virtual screenings, (accessed 01/12/2014). http://autodock.scripps.edu/resources/raccoon.
  • 51
    • 0033397980 scopus 로고    scopus 로고
    • Python: a programming language for software integration and development
    • Sanner M.F. Python: a programming language for software integration and development. J. Mol. Graph. Model. 1999, 17:57-61.
    • (1999) J. Mol. Graph. Model. , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 52
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott O., Olson A.J. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem. 2010, 31:455-461.
    • (2010) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 53
    • 11644261806 scopus 로고    scopus 로고
    • Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    • Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., et al. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 1998, 19:1639-1662.
    • (1998) J. Comput. Chem. , vol.19 , pp. 1639-1662
    • Morris, G.M.1    Goodsell, D.S.2    Halliday, R.S.3    Huey, R.4    Hart, W.E.5    Belew, R.K.6
  • 54
    • 77949848865 scopus 로고    scopus 로고
    • Computationally efficient algorithm to identify matched molecular pairs (MMPs) in large data sets
    • Hussain J., Rea C. Computationally efficient algorithm to identify matched molecular pairs (MMPs) in large data sets. J. Chem. Inf. Model. 2010, 50:339-348.
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 339-348
    • Hussain, J.1    Rea, C.2
  • 55
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm S. A simple sequentially rejective multiple test procedure. Scand. J. Stat. 1979, 6:65-70.
    • (1979) Scand. J. Stat. , vol.6 , pp. 65-70
    • Holm, S.1
  • 56
    • 84893313575 scopus 로고    scopus 로고
    • Modeling the biodegradability of chemical compounds using the Online CHEmical Modeling Environment (OCHEM)
    • Vorberg S., Tetko I.V. Modeling the biodegradability of chemical compounds using the Online CHEmical Modeling Environment (OCHEM). Mol. Inf. 2014, 33(1):73-85.
    • (2014) Mol. Inf. , vol.33 , Issue.1 , pp. 73-85
    • Vorberg, S.1    Tetko, I.V.2
  • 57
    • 44449173096 scopus 로고    scopus 로고
    • Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis
    • Zhu H., Tropsha A., Fourches D., Varnek A., Papa E., Gramatica P., et al. Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis. J. Chem. Inf. Model. 2008, 48:766-784.
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 766-784
    • Zhu, H.1    Tropsha, A.2    Fourches, D.3    Varnek, A.4    Papa, E.5    Gramatica, P.6
  • 59
    • 54249125512 scopus 로고    scopus 로고
    • Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection
    • Tetko I.V., Sushko I., Pandey A.K., Zhu H., Tropsha A., Papa E., et al. Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection. J. Chem. Inf. Model. 2008, 48:1733-1746.
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 1733-1746
    • Tetko, I.V.1    Sushko, I.2    Pandey, A.K.3    Zhu, H.4    Tropsha, A.5    Papa, E.6
  • 60
    • 78650714907 scopus 로고    scopus 로고
    • Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set
    • Sushko I., Novotarskyi S., Korner R., Pandey A.K., Cherkasov A., Li J., et al. Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set. J. Chem. Inf. Model. 2010, 50:2094-2111.
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 2094-2111
    • Sushko, I.1    Novotarskyi, S.2    Korner, R.3    Pandey, A.K.4    Cherkasov, A.5    Li, J.6
  • 62
    • 9744258219 scopus 로고    scopus 로고
    • Crystallography and the design of anti-AIDS drugs: conformational flexibility and positional adaptability are important in the design of non-nucleoside HIV-1 reverse transcriptase inhibitors
    • Das K., Lewi P.J., Hughes S.H., Arnold E. Crystallography and the design of anti-AIDS drugs: conformational flexibility and positional adaptability are important in the design of non-nucleoside HIV-1 reverse transcriptase inhibitors. Prog. Biophys. Mol. Biol. 2005, 88:209-231.
    • (2005) Prog. Biophys. Mol. Biol. , vol.88 , pp. 209-231
    • Das, K.1    Lewi, P.J.2    Hughes, S.H.3    Arnold, E.4
  • 63
    • 70449631074 scopus 로고    scopus 로고
    • Activity and molecular modeling of a new small molecule active against NNRTI-resistant HIV-1 mutants
    • Carta A., Pricl S., Piras S., Fermeglia M., La Colla P., Loddo R. Activity and molecular modeling of a new small molecule active against NNRTI-resistant HIV-1 mutants. Eur. J. Med. Chem. 2009, 44:5117-5122.
    • (2009) Eur. J. Med. Chem. , vol.44 , pp. 5117-5122
    • Carta, A.1    Pricl, S.2    Piras, S.3    Fermeglia, M.4    La Colla, P.5    Loddo, R.6
  • 64
    • 20544451024 scopus 로고    scopus 로고
    • An approach toward the problem of outliers in QSAR
    • Verma R.P., Hansch C. An approach toward the problem of outliers in QSAR. Bioorg. Med. Chem. 2005, 13:4597-4621.
    • (2005) Bioorg. Med. Chem. , vol.13 , pp. 4597-4621
    • Verma, R.P.1    Hansch, C.2
  • 65
    • 34548785534 scopus 로고    scopus 로고
    • Outliers in SAR and QSAR: 2. Is a flexible binding site a possible source of outliers?
    • Kim K.H. Outliers in SAR and QSAR: 2. Is a flexible binding site a possible source of outliers?. J. Comput. Aided Mol. Des. 2007, 21:421-435.
    • (2007) J. Comput. Aided Mol. Des. , vol.21 , pp. 421-435
    • Kim, K.H.1
  • 66
    • 33947195392 scopus 로고    scopus 로고
    • Outliers in SAR and QSAR: is unusual binding mode a possible source of outliers?
    • Kim K.H. Outliers in SAR and QSAR: is unusual binding mode a possible source of outliers?. J. Comput. Aided Mol. Des. 2007, 21:63-86.
    • (2007) J. Comput. Aided Mol. Des. , vol.21 , pp. 63-86
    • Kim, K.H.1
  • 67
    • 84857447860 scopus 로고    scopus 로고
    • The perspectives of computational chemistry modeling
    • Tetko I.V. The perspectives of computational chemistry modeling. J. Comput. Aided Mol. Des. 2012, 26:135-136.
    • (2012) J. Comput. Aided Mol. Des. , vol.26 , pp. 135-136
    • Tetko, I.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.