Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion

Current Opinion in Chemical Biology

Volumn 29, Issue , 2015, Pages 49-57

  Zhang, Guo Chang ^a   Liu, Jing Jing ^a   Kong, In Iok ^a   Kwak, Suryang ^a   Jin, Yong Su ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; BIOFUEL; GALACTOSE; GLUCOSE; PETROLEUM; SUGAR; XYLOSE;

BIOMASS; BIOTRANSFORMATION; CLIMATE CHANGE; COST; DEPOLYMERIZATION; ESCHERICHIA COLI; FERMENTATION; LAND BIOME; MAIZE; MARINE ENVIRONMENT; METABOLIC ENGINEERING; METABOLISM; NONHUMAN; REVIEW; SACCHAROMYCES CEREVISIAE; SUGARCANE; SYNTHESIS; YEAST; CARBOHYDRATE METABOLISM; FUNGUS; GENETICS; MICROBIOLOGY; PROCEDURES;

BIOFUELS; BIOMASS; CARBOHYDRATE METABOLISM; ESCHERICHIA COLI; FERMENTATION; FUNGI; METABOLIC ENGINEERING; METABOLIC NETWORKS AND PATHWAYS; SACCHAROMYCES CEREVISIAE;

EID: 84942599630     PISSN: 13675931     EISSN: 18790402     Source Type: Journal    
DOI: 10.1016/j.cbpa.2015.09.008     Document Type: Review

References (52)

1. Chu S., Majumdar A. Opportunities and challenges for a sustainable energy future. Nature 2012, 488:294-303.
2. Graham-Rowe D. Agriculture: beyond food versus fuel. Nature 2011, 474:S6-S8.
3. Tuck C.O., Perez E., Horvath I.T., Sheldon R.A., Poliakoff M. Valorization of biomass: deriving more value from waste. Science 2012, 337:695-699.
4. Kim S.R., Ha S.-J., Wei N., Oh E.J., Jin Y-S. Simultaneous co-fermentation of mixed sugars: a promising strategy for producing cellulosic ethanol. Trends Biotechnol 2012, 30:274-282.
5. Wei N., Quarterman J., Jin Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends Biotechnol 2013, 31:70-77.
6. Gong Z., Wang Q., Shen H., Hu C., Jin G., Zhao Z.K. Co-fermentation of cellobiose and xylose by Lipomyces starkeyi for lipid production. Bioresour Technol 2012, 117:20-24.
7. Long T.M., Su Y.K., Headman J., Higbee A., Willis L.B., Jeffries T.W. Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast Spathaspora passalidarum. Appl Environ Microbiol 2012, 78:5492-5500.
8. Liu W., Wang Y., Yu Z., Bao J. Simultaneous saccharification and microbial lipid fermentation of corn stover by oleaginous yeast Trichosporon cutaneum. Bioresour Technol 2012, 118:13-18.
9. Trumbly R.J. Glucose repression in the yeast Saccharomyces cerevisiae. Mol Microbiol 1992, 6:15-21.
10. Subtil T., Boles E. Competition between pentoses and glucose during uptake and catabolism in recombinant Saccharomyces cerevisiae. Biotechnol Biofuels 2012, 5:14.
11. Zaldivar J., Nielsen J., Olsson L. Fuel ethanol production from lignocellulose: a challenge for metabolic engineering and process integration. Appl Microbiol Biotechnol 2001, 56:17-34.
12. Trinh C.T., Unrean P., Srienc F. Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses. Appl Environ Microbiol 2008, 74:3634-3643.
13. Wargacki A.J., Leonard E., Win M.N., Regitsky D.D., Santos C.N., Kim P.B., Cooper S.R., Raisner R.M., Herman A., Sivitz A.B., et al. An engineered microbial platform for direct biofuel production from brown macroalgae. Science 2012, 335:308-313.
14. Enquist-Newman M., Faust A.M., Bravo D.D., Santos C.N., Raisner R.M., Hanel A., Sarvabhowman P., Le C., Regitsky D.D., Cooper S.R., et al. Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform. Nature 2014, 505:239-243.
15. Ha S.J., Galazka J.M., Kim S.R., Choi J.H., Yang X., Seo J.H., Glass N.L., Cate J.H., Jin Y.S. Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci U S A 2011, 108:504-509.
16. Farwick A., Bruder S., Schadeweg V., Oreb M., Boles E. Engineering of yeast hexose transporters to transport d-xylose without inhibition by d-glucose. Proc Natl Acad Sci U S A 2014, 111:5159-5164.
17. Liang Y., Si T., Ang E.L., Zhao H. Engineered pentafunctional minicellulosome for simultaneous saccharification and ethanol fermentation in Saccharomyces cerevisiae. Appl Environ Microbiol 2014, 80:6677-6684.
18. Koppram R., Olsson L. Combined substrate, enzyme and yeast feed in simultaneous saccharification and fermentation allow bioethanol production from pretreated spruce biomass at high solids loadings. Biotechnol Biofuels 2014, 7:54.
19. Koppram R., Nielsen F., Albers E., Lambert A., Wannstrom S., Welin L., Zacchi G., Olsson L. Simultaneous saccharification and co-fermentation for bioethanol production using corncobs at lab PDU and demo scales. Biotechnol Biofuels 2013, 6:2.
20. Lee S.M., Jellison T., Alper HS: 1. Systematic and evolutionary engineering of a xylose isomerase-based pathway in Saccharomyces cerevisiae for efficient conversion yields. Biotechnol Biofuels 2014, 7:122.
21. Zhou H., Cheng J.S., Wang B.L., Fink G.R., Stephanopoulos G: Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae. Metab Eng 2012, 14:611-622.
22. Kim S.R., Skerker J.M., Kang W., Lesmana A., Wei N., Arkin A.P., Jin Y.S. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLOS ONE 2013, 8:e57048.
23. Kotter P., Amore R., Hollenberg C.P., Ciriacy M. Isolation and characterization of the Pichia stipitis xylitol dehydrogenase gene. XYL2, and construction of a xylose-utilizing Saccharomyces cerevisiae transformant. Curr Genet 1990, 18:493-500.
24. Sarthy A.V., McConaughy B.L., Lobo Z., Sundstrom J.A., Furlong C.E., Hall B.D. Expression of the Escherichia coli xylose isomerase gene in Saccharomyces cerevisiae. Appl Environ Microbiol 1987, 53:1996-2000.
25. Wei N., Quarterman J., Kim S.R., Cate J.H.D., Jin Y.-S. Enhanced biofuel production through coupled acetic acid and xylose consumption by engineered yeast. Nat Commun 2013, 4.
26. Wasylenko T.M., Stephanopoulos G. Metabolomic and (13)C-metabolic flux analysis of a xylose-consuming Saccharomyces cerevisiae strain expressing xylose isomerase. Biotechnol Bioeng 2015, 112:470-483.
27. Wisselink H.W., Toirkens M.J., del Rosario Franco Berriel M., Winkler A.A., van Dijken J.P., Pronk J.T., van Maris A.J. Engineering of Saccharomyces cerevisiae for efficient anaerobic alcoholic fermentation of l-arabinose. Appl Environ Microbiol 2007, 73:4881-4891.
28. Richard P., Londesborough J., Putkonen M., Kalkkinen N., Penttila M: Cloning and expression of a fungal l-arabinitol 4-dehydrogenase gene. J Biol Chem 2001, 276:40631-40637.
29. Richard P., Putkonen M., Vaananen R., Londesborough J., Penttila M. The missing link in the fungal l-arabinose catabolic pathway, identification of the l-xylulose reductase gene. Biochemistry 2002, 41:6432-6437.
30. Bettiga M., Bengtsson O., Hahn-Hagerdal B., Gorwa-Grauslund M.F. Arabinose and xylose fermentation by recombinant Saccharomyces cerevisiae expressing a fungal pentose utilization pathway. Microb Cell Fact 2009, 8:40.
31. Hamacher T., Becker J., Gardonyi M., Hahn-Hagerdal B., Boles E. Characterization of the xylose-transporting properties of yeast hexose transporters and their influence on xylose utilization. Microbiology 2002, 148:2783-2788.
32. Becker J., Boles E. A modified Saccharomyces cerevisiae strain that consumes l-Arabinose and produces ethanol. Appl Environ Microbiol 2003, 69:4144-4150.
33. Leandro M.J., Goncalves P., Spencer-Martins I. Two glucose/xylose transporter genes from the yeast Candida intermedia: first molecular characterization of a yeast xylose-H+ symporter. Biochem J 2006, 395:543-549.
34. Young E.M., Comer A.D., Huang H., Alper H.S. A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae. Metab Eng 2012, 14:401-411.
35. Wang C., Bao X., Li Y., Jiao C., Hou J., Zhang Q., Zhang W., Liu W., Shen Y. Cloning and characterization of heterologous transporters in Saccharomyces cerevisiae and identification of important amino acids for xylose utilization. Metab Eng 2015, 30:79-88.
36. Subtil T., Boles E. Improving l-arabinose utilization of pentose fermenting Saccharomyces cerevisiae cells by heterologous expression of l-arabinose transporting sugar transporters. Biotechnol Biofuels 2011, 4:38.
37. Galazka J.M., Tian C., Beeson W.T., Martinez B., Glass N.L., Cate J.H. Cellodextrin transport in yeast for improved biofuel production. Science 2010, 330:84-86.
38. Ha S.J., Galazka J.M., Joong Oh E., Kordic V., Kim H., Jin Y.S., Cate J.H. Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metab Eng 2013, 15:134-143.
39. Kremling A., Geiselmann J., Ropers D., de Jong H: Understanding carbon catabolite repression in Escherichia coli using quantitative models. Trends Microbiol 2015, 23:99-109.
40. Yu X., Zheng Y., Xiong X., Chen S. Co-utilization of glucose, xylose and cellobiose by the oleaginous yeast Cryptococcus curvatus. Biomass Bioenergy 2014, 71:340-349.
41. Li S., Du J., Sun J., Galazka J.M., Glass N.L., Cate J.H., Yang X., Zhao H. Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a beta-glucosidase in Saccharomyces cerevisiae. Mol Biosyst 2010, 6:2129-2132.
42. Ha S.J., Kim S.R., Kim H., Du J., Cate J.H., Jin Y.S. Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae. Bioresour Technol 2013, 149:525-531.
43. Ha S.J., Wei Q., Kim S.R., Galazka J.M., Cate J.H., Jin Y.S. Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae strain. Appl Environ Microbiol 2011, 77:5822-5825.
44. Goncalves D.L., Matsushika A., de Sales B.B., Goshima T., Bon E.P., Stambuk B.U. Xylose and xylose/glucose co-fermentation by recombinant Saccharomyces cerevisiae strains expressing individual hexose transporters. Enzyme Microb Technol 2014, 63:13-20.
45. Young E.M., Tong A., Bui H., Spofford C., Alper H.S. Rewiring yeast sugar transporter preference through modifying a conserved protein motif. Proc Natl Acad Sci U S A 2014, 111:131-136.
46. Nijland J., Shin H., de Jong R., de Waal P., Klaassen P., Driessen A: Engineering of an endogenous hexose transporter into a specific d-xylose transporter facilitates glucose-xylose co-consumption in Saccharomyces cerevisiae. Biotechnol Biofuels 2014, 7:168.
47. Shen M.H., Song H., Li B.Z., Yuan Y.J. Deletion of d-ribulose-5-phosphate 3-epimerase (RPE1) induces simultaneous utilization of xylose and glucose in xylose-utilizing Saccharomyces cerevisiae. Biotechnol Lett 2015, 37:1031-1036.
48. Gawand P., Hyland P., Ekins A., Martin V.J., Mahadevan R. Novel approach to engineer strains for simultaneous sugar utilization. Metab Eng 2013, 20:63-72.
49. Kim S.M., Choi B.Y., Ryu Y.S., Jung S.H., Park J.M., Kim G.H., Lee S.K. Simultaneous utilization of glucose and xylose via novel mechanisms in engineered Escherichia coli. Metab Eng 2015, 30:141-148.
50. Oh E.J., Ha S.J., Rin Kim S., Lee W.H., Galazka J.M., Cate J.H., Jin Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metab Eng 2013, 15:226-234.
51. Shiue E., Brockman I.M., Prather K.L. Improving product yields on d-glucose in Escherichia coli via knockout of pgi and zwf and feeding of supplemental carbon sources. Biotechnol Bioeng 2015, 112:579-587.
52. Wei N., Oh E.J., Million G., Cate J.H., Jin Y.S. Simultaneous utilization of cellobiose xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. ACS Synth Biol 2015, 4:707-713.