메뉴 건너뛰기




Volumn 74, Issue 12, 2008, Pages 3634-3643

Minimal Eschenchia coli cell for the most efficient production of ethanol from hexoses and pentoses

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER NETWORKS; ESCHERICHIA COLI; ETHANOL; GLUCOSE; GROWTH KINETICS; METROPOLITAN AREA NETWORKS; MINE FLOODING; NETWORK PROTOCOLS; STRAIN;

EID: 45749137679     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02708-07     Document Type: Article
Times cited : (227)

References (46)
  • 1
    • 0033895840 scopus 로고    scopus 로고
    • Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli
    • Alexeeva, S., B. de Kort, G. Sawers, K. J. Hellingwerf, and M. J. de Mattos. 2000. Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli. J. Bacteriol. 182:4934-4940.
    • (2000) J. Bacteriol , vol.182 , pp. 4934-4940
    • Alexeeva, S.1    de Kort, B.2    Sawers, G.3    Hellingwerf, K.J.4    de Mattos, M.J.5
  • 2
    • 18844392599 scopus 로고    scopus 로고
    • Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli
    • Alper, H., Y. Jin, J. F. Moxley, and G. Stephanopoulos. 2005. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab. Eng. 7:155-164.
    • (2005) Metab. Eng , vol.7 , pp. 155-164
    • Alper, H.1    Jin, Y.2    Moxley, J.F.3    Stephanopoulos, G.4
  • 3
    • 0024712895 scopus 로고
    • Efficient ethanol production from glucose, lactose, and xylose by recombinant Escherichia coli
    • Alterthum, F., and L. O. Ingram. 1989. Efficient ethanol production from glucose, lactose, and xylose by recombinant Escherichia coli. Appl. Environ. Microbiol. 55:1943-1948.
    • (1989) Appl. Environ. Microbiol , vol.55 , pp. 1943-1948
    • Alterthum, F.1    Ingram, L.O.2
  • 4
    • 31544450286 scopus 로고    scopus 로고
    • Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K. A. Datsenko, M. Tomita, B. L. Wanner, and H. Mori. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:msb4100050-E1.
    • Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K. A. Datsenko, M. Tomita, B. L. Wanner, and H. Mori. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:msb4100050-E1.
  • 5
    • 45749091219 scopus 로고    scopus 로고
    • Bachmann, B. J. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 2460-2488. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., 2. ASM Press, Washington, DC.
    • Bachmann, B. J. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 2460-2488. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 2. ASM Press, Washington, DC.
  • 6
    • 0033199209 scopus 로고    scopus 로고
    • Fermentations with new recombinant organisms
    • Bothast, R. J., N. N. Nichols, and B. S. Dien. 1999. Fermentations with new recombinant organisms. Biotechnol. Prog. 15:867-875.
    • (1999) Biotechnol. Prog , vol.15 , pp. 867-875
    • Bothast, R.J.1    Nichols, N.N.2    Dien, B.S.3
  • 7
    • 0242487787 scopus 로고    scopus 로고
    • Optknock: A bilevel programming framework for identifying gene knockout strategics for microbial strain optimization
    • Burgard, A. P., P. Pharkya, and C. D. Maranas. 2003. Optknock: a bilevel programming framework for identifying gene knockout strategics for microbial strain optimization. Biotechnol. Bioeng. 84:647-657.
    • (2003) Biotechnol. Bioeng , vol.84 , pp. 647-657
    • Burgard, A.P.1    Pharkya, P.2    Maranas, C.D.3
  • 8
    • 0347761259 scopus 로고    scopus 로고
    • Fundamental Escherichia coli biochemical pathways for biomass and energy production: Identification of reactions
    • Carlson, R., and F. Srienc. 2004. Fundamental Escherichia coli biochemical pathways for biomass and energy production: identification of reactions. Biotechnol. Bioeng. 85:1-18.
    • (2004) Biotechnol. Bioeng , vol.85 , pp. 1-18
    • Carlson, R.1    Srienc, F.2
  • 9
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 10
    • 0034040510 scopus 로고    scopus 로고
    • Development of new ethanologenic Escherichia coli strains for fermentation of lignocellulosic biomass
    • Dien, B. S., N. N. Nichols, P. J. O'Bryan, and R. J. Bothast. 2000. Development of new ethanologenic Escherichia coli strains for fermentation of lignocellulosic biomass. Appl. Biochem. Biotechnol. 84-86:181-196.
    • (2000) Appl. Biochem. Biotechnol , vol.84-86 , pp. 181-196
    • Dien, B.S.1    Nichols, N.N.2    O'Bryan, P.J.3    Bothast, R.J.4
  • 11
    • 0032211239 scopus 로고    scopus 로고
    • Fermentation of hexose and pentose sugars using a novel ethanologenic Escherichia coli strain
    • Dien, B. S., R. B. Hespell, H. A. Wyckoff, and R. J. Bothast. 1998. Fermentation of hexose and pentose sugars using a novel ethanologenic Escherichia coli strain. Enzyme Microb. Technol. 23:366-371.
    • (1998) Enzyme Microb. Technol , vol.23 , pp. 366-371
    • Dien, B.S.1    Hespell, R.B.2    Wyckoff, H.A.3    Bothast, R.J.4
  • 12
    • 0032789015 scopus 로고    scopus 로고
    • Comparative stability of ethanol production by Escherichia coli KO11 in batch and chemostat culture
    • Dumsday, G. J., B. Zhou, W. Yaqin, G. A. Stanley, and N. B. Pamment. 1999. Comparative stability of ethanol production by Escherichia coli KO11 in batch and chemostat culture. J. Ind. Microbiol. Biotechnol. 23:701-708.
    • (1999) J. Ind. Microbiol. Biotechnol , vol.23 , pp. 701-708
    • Dumsday, G.J.1    Zhou, B.2    Yaqin, W.3    Stanley, G.A.4    Pamment, N.B.5
  • 14
    • 33846108255 scopus 로고    scopus 로고
    • Towards synthesis of a minimal cell
    • Forster, A. C., and G. M. Church. 2006. Towards synthesis of a minimal cell. Mol. Syst. Biol. 2:45.
    • (2006) Mol. Syst. Biol , vol.2 , pp. 45
    • Forster, A.C.1    Church, G.M.2
  • 15
    • 0028829125 scopus 로고    scopus 로고
    • Fraser, C. M., J. D. Gocayne, O. White, M. D. Adams, R. A. Clayton, R. D. Fleischmann, C. J. Bult, A. R. Kerlavage, G. Sutton, J. M. Kelley, R. D. Fritchman, J. F. Weidman, K. V. Small, M. Sandusky, J. Fuhrmann, D. Nguyen, T. R. Utterback, D. M. Saudek, C. A. Phillips, J. M. Merrick, J. F. Tomb, B. A. Dougherty, K. F. Bott, P. C. Hu, T. S. Lucier, S. N. Peterson, H. O. Smith, C. A. Hutchison III, and J. C. Venter. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270:397-403.
    • Fraser, C. M., J. D. Gocayne, O. White, M. D. Adams, R. A. Clayton, R. D. Fleischmann, C. J. Bult, A. R. Kerlavage, G. Sutton, J. M. Kelley, R. D. Fritchman, J. F. Weidman, K. V. Small, M. Sandusky, J. Fuhrmann, D. Nguyen, T. R. Utterback, D. M. Saudek, C. A. Phillips, J. M. Merrick, J. F. Tomb, B. A. Dougherty, K. F. Bott, P. C. Hu, T. S. Lucier, S. N. Peterson, H. O. Smith, C. A. Hutchison III, and J. C. Venter. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270:397-403.
  • 17
    • 0031832290 scopus 로고    scopus 로고
    • Genetically engineered Saccharomyces yeast capable of effective cofermentation of glucose and xylose
    • Ho, N. W., Z. Chen, and A. P. Brainard. 1998. Genetically engineered Saccharomyces yeast capable of effective cofermentation of glucose and xylose. Appl. Environ. Microbiol. 64:1852-1859.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 1852-1859
    • Ho, N.W.1    Chen, Z.2    Brainard, A.P.3
  • 19
    • 0000186462 scopus 로고
    • Expression of different levels of ethanologenic enzymes from Zymomonas mobilis in recombinant strains of Escherichia coli
    • Ingram, L. O., and T. Conway. 1988. Expression of different levels of ethanologenic enzymes from Zymomonas mobilis in recombinant strains of Escherichia coli. Appl. Environ. Microbiol. 54:397-404.
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 397-404
    • Ingram, L.O.1    Conway, T.2
  • 23
    • 0035796390 scopus 로고    scopus 로고
    • Expression of the glucose transporter gene, ptsG, is regulated at the mRNA degradation step in response to glycolytic flux in Escherichia coli
    • Kimata, K., Y. Tanaka, T. Inada, and H. Aiba. 2001. Expression of the glucose transporter gene, ptsG, is regulated at the mRNA degradation step in response to glycolytic flux in Escherichia coli. EMBO J. 20:3587-3595.
    • (2001) EMBO J , vol.20 , pp. 3587-3595
    • Kimata, K.1    Tanaka, Y.2    Inada, T.3    Aiba, H.4
  • 24
    • 0028969953 scopus 로고
    • Improved strains of recombinant Escherichia coli for ethanol production from sugar mixtures
    • Lindsay, S. E., R. J. Bothast, and L. O. Ingram. 1995. Improved strains of recombinant Escherichia coli for ethanol production from sugar mixtures. Appl. Microbiol. Biotechnol. 43:70-75.
    • (1995) Appl. Microbiol. Biotechnol , vol.43 , pp. 70-75
    • Lindsay, S.E.1    Bothast, R.J.2    Ingram, L.O.3
  • 25
    • 0011883181 scopus 로고
    • Inhibitory effect of glucose on enzyme formation
    • Magasanik, B., and F. C. Neidhardt. 1956. Inhibitory effect of glucose on enzyme formation. Nature 178:801-802.
    • (1956) Nature , vol.178 , pp. 801-802
    • Magasanik, B.1    Neidhardt, F.C.2
  • 26
    • 45749090810 scopus 로고    scopus 로고
    • Mayer, C., and W. Boos. March 2005, posting date. Chapter 3.4.1. Hexose/pentose and hexitol/pentitol metabolism. In R. Curtiss III et al. (ed.), EcoSal - Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC. http://www.ecosal.org.
    • Mayer, C., and W. Boos. March 2005, posting date. Chapter 3.4.1. Hexose/pentose and hexitol/pentitol metabolism. In R. Curtiss III et al. (ed.), EcoSal - Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC. http://www.ecosal.org.
  • 27
    • 0029789824 scopus 로고    scopus 로고
    • A minimal gene set for cellular life derived by comparison of complete bacterial genomes
    • Mushegian, A. R., and E. V. Koonin. 1996. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. USA 93:10268-10273.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 10268-10273
    • Mushegian, A.R.1    Koonin, E.V.2
  • 28
    • 0003796783 scopus 로고
    • Neidhardt, F. C, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger ed, American Society for Microbiology, Washington, DC
    • Neidhardt, F. C., J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.). 1987. Escherichia coli and Salmonella typhimurium: cellular and molecular biology, vol. 1. American Society for Microbiology, Washington, DC.
    • (1987) Escherichia coli and Salmonella typhimurium: Cellular and molecular biology , vol.1
  • 29
    • 0034911540 scopus 로고    scopus 로고
    • Use of catabolite repression mutants for fermentation of sugar mixtures to ethanol
    • Nichols, N. N., B. S. Dien, and R. J. Bothast. 2001. Use of catabolite repression mutants for fermentation of sugar mixtures to ethanol. Appl. Microbiol. Biotechnol. 56:120-125.
    • (2001) Appl. Microbiol. Biotechnol , vol.56 , pp. 120-125
    • Nichols, N.N.1    Dien, B.S.2    Bothast, R.J.3
  • 30
    • 0025825737 scopus 로고
    • Genetic improvement of Escherichia coli for ethanol production: Chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II
    • Ohta, K., D. S. Beall, J. P. Mejia, K. T. Shanmugam, and L. O. Ingram. 1991. Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II. Appl. Environ. Microbiol. 57:893-900.
    • (1991) Appl. Environ. Microbiol , vol.57 , pp. 893-900
    • Ohta, K.1    Beall, D.S.2    Mejia, J.P.3    Shanmugam, K.T.4    Ingram, L.O.5
  • 31
    • 0030860064 scopus 로고    scopus 로고
    • Versatile insertion plasmids for targeted genome manipulations in bacteria: Isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome
    • Pósfai, G., M. D. Koob, H. A. Kirkpatrick, and F. R. Blattner. 1997. Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome. J. Bacteriol. 179:4426-4428.
    • (1997) J. Bacteriol , vol.179 , pp. 4426-4428
    • Pósfai, G.1    Koob, M.D.2    Kirkpatrick, H.A.3    Blattner, F.R.4
  • 34
    • 45749102335 scopus 로고    scopus 로고
    • Saier, M. H., Jr., T. M. Ramseier, and J. Reizer. 1996. Regulation of carbon utilization, p. 1325-1343. In F. C. Neidhardt, R. Curtiss III, I. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., 1. ASM Press, Washington, DC.
    • Saier, M. H., Jr., T. M. Ramseier, and J. Reizer. 1996. Regulation of carbon utilization, p. 1325-1343. In F. C. Neidhardt, R. Curtiss III, I. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. ASM Press, Washington, DC.
  • 35
    • 0036691976 scopus 로고    scopus 로고
    • Reaction routes in biochemical reaction systems: Algebraic properties, validated calculation procedure and example from nucleotide metabolism
    • Schuster, S., C. Hilgetag, J. H. Woods, and D. A. Fell. 2002. Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism. J. Math. Biol. 45:153-181.
    • (2002) J. Math. Biol , vol.45 , pp. 153-181
    • Schuster, S.1    Hilgetag, C.2    Woods, J.H.3    Fell, D.A.4
  • 36
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • Schuster, S., D. A. Fell, and T. Dandekar. 2000. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 18:326-332.
    • (2000) Nat. Biotechnol , vol.18 , pp. 326-332
    • Schuster, S.1    Fell, D.A.2    Dandekar, T.3
  • 37
    • 0037069467 scopus 로고    scopus 로고
    • Analysis of optimality in natural and perturbed metabolic networks
    • Segrè, D., D. Vitkup, and G. M. Church. 2002. Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 99:15112-15117.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15112-15117
    • Segrè, D.1    Vitkup, D.2    Church, G.M.3
  • 38
    • 13344294402 scopus 로고    scopus 로고
    • Effect of glucose supply strategy on acetate accumulation, growth, and recombinant protein production by Escherichia coli BL21 (λDE3) and Escherichia coli
    • Shiloach, J., J. Kaufman, A. S. Guillard, and R. Fass. 1996. Effect of glucose supply strategy on acetate accumulation, growth, and recombinant protein production by Escherichia coli BL21 (λDE3) and Escherichia coli JM109. Biotechnol. Bioeng. 49:421-428.
    • (1996) JM109. Biotechnol. Bioeng , vol.49 , pp. 421-428
    • Shiloach, J.1    Kaufman, J.2    Guillard, A.S.3    Fass, R.4
  • 40
    • 0037079050 scopus 로고    scopus 로고
    • Metabolic network structure determines key aspects of functionality and regulation
    • Stelling, J., S. Klamt, K. Bettenbrock, S. Schuster, and E. D. Gilles. 2002. Metabolic network structure determines key aspects of functionality and regulation. Nature 420:190-193.
    • (2002) Nature , vol.420 , pp. 190-193
    • Stelling, J.1    Klamt, S.2    Bettenbrock, K.3    Schuster, S.4    Gilles, E.D.5
  • 41
    • 33749448704 scopus 로고    scopus 로고
    • Design, construction and performance of the most efficient biomass producing E. coli bacterium
    • Trinh, C. T., R. Carlson, A. Wlaschin, and F. Srienc. 2006. Design, construction and performance of the most efficient biomass producing E. coli bacterium. Metab. Eng. 8:628-638.
    • (2006) Metab. Eng , vol.8 , pp. 628-638
    • Trinh, C.T.1    Carlson, R.2    Wlaschin, A.3    Srienc, F.4
  • 42
    • 33747856186 scopus 로고    scopus 로고
    • Metatool 5.0: Fast and flexible elementary modes analysis
    • von Kamp, A., and S. Schuster. 2006. Metatool 5.0: fast and flexible elementary modes analysis. Bioinformatics 22:1930-1931.
    • (2006) Bioinformatics , vol.22 , pp. 1930-1931
    • von Kamp, A.1    Schuster, S.2
  • 43
    • 33746929855 scopus 로고    scopus 로고
    • The fractional contributions of elementary modes to the metabolism of Escherichia coli and their estimation from reaction entropies
    • Wlaschin, A. P., C. T. Trinh, R. Carlson, and F. Srienc. 2006. The fractional contributions of elementary modes to the metabolism of Escherichia coli and their estimation from reaction entropies. Metab. Eng. 8:338-352.
    • (2006) Metab. Eng , vol.8 , pp. 338-352
    • Wlaschin, A.P.1    Trinh, C.T.2    Carlson, R.3    Srienc, F.4
  • 44
    • 0031923093 scopus 로고    scopus 로고
    • Isolation and characterization of ethanol-tolerant mutants of Escherichia coli KO11 for fuel ethanol production
    • Yomano, L. P., S. W. York, and L. O. Ingram. 1998. Isolation and characterization of ethanol-tolerant mutants of Escherichia coli KO11 for fuel ethanol production. J. Ind. Microbiol. Biotechnol. 20:132-138.
    • (1998) J. Ind. Microbiol. Biotechnol , vol.20 , pp. 132-138
    • Yomano, L.P.1    York, S.W.2    Ingram, L.O.3
  • 45
    • 0028953195 scopus 로고
    • Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis
    • Zhang, M., C. Eddy, K. Deanda, M. Finkelstein, and S. Picataggio. 1995. Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis. Science 267:240-243.
    • (1995) Science , vol.267 , pp. 240-243
    • Zhang, M.1    Eddy, C.2    Deanda, K.3    Finkelstein, M.4    Picataggio, S.5
  • 46
    • 2442545374 scopus 로고    scopus 로고
    • The effect of pfl gene knockout on the metabolism for optically pure D-lactate production by Escherichia coli
    • Zhu, J., and K. Shimizu. 2004. The effect of pfl gene knockout on the metabolism for optically pure D-lactate production by Escherichia coli. Appl. Microbiol. Biotechnol. 64:367-375.
    • (2004) Appl. Microbiol. Biotechnol , vol.64 , pp. 367-375
    • Zhu, J.1    Shimizu, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.