-
1
-
-
2442728636
-
Construction of biologically functional bacterial plasmids in vitro
-
Cohen SN, Chang ACY, Boyer HW, Helling RB (1973) Construction of biologically functional bacterial plasmids in vitro. Proc Natl Acad Sci 70(11):3240-3244
-
(1973)
Proc Natl Acad Sci
, vol.70
, Issue.11
, pp. 3240-3244
-
-
Cohen, S.N.1
Chang, A.2
Boyer, H.W.3
Helling, R.B.4
-
2
-
-
0015412107
-
Biochemical method for inserting new genetic information into DNA of simian virus 40: Circular SV40 DNA molecules containing lambda phage genes and the galactose operon of Escherichia coli
-
Jackson DA, Symons RH, Berg P (1972) Biochemical method for inserting new genetic information into DNA of simian virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of Escherichia coli. Proc Natl Acad Sci 69(10):2904-2909
-
(1972)
Proc Natl Acad Sci
, vol.69
, Issue.10
, pp. 2904-2909
-
-
Jackson, D.A.1
Symons, R.H.2
Berg, P.3
-
3
-
-
0022372670
-
Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
-
Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230(4732):1350-1354
-
(1985)
Science
, vol.230
, Issue.4732
, pp. 1350-1354
-
-
Saiki, R.K.1
Scharf, S.2
Faloona, F.3
Mullis, K.B.4
Horn, G.T.5
Erlich, H.A.6
Arnheim, N.7
-
4
-
-
24344436666
-
Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlex whole genome amplified DNA generated from multiple DNA sources
-
Bergen AW, Haque KA, Qi Y, Beerman MB, Garcia-Closas M, Rothman N, Chanock SJ (2005) Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlex whole genome amplified DNA generated from multiple DNA sources. Hum Mutat 26(3):262-270. doi:10.1002/humu.20213
-
(2005)
Hum Mutat
, vol.26
, Issue.3
, pp. 262-270
-
-
Bergen, A.W.1
Haque, K.A.2
Qi, Y.3
Beerman, M.B.4
Garcia-Closas, M.5
Rothman, N.6
Chanock, S.J.7
-
5
-
-
84876122754
-
The future is now: Single-cell genomics of bacteria and archaea
-
Blainey PC (2013) The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol Rev 37(3):407-427. doi:10.1111/1574-6976.12015
-
(2013)
FEMS Microbiol Rev
, vol.37
, Issue.3
, pp. 407-427
-
-
Blainey, P.C.1
-
6
-
-
84868098266
-
Single cell genomics: An individual look at microbes
-
Stepanauskas R (2012) Single cell genomics: an individual look at microbes. Curr Opin Microbiol 15(5):613-620. doi:10.1016/j.mib.2012.09.001
-
(2012)
Curr Opin Microbiol
, vol.15
, Issue.5
, pp. 613-620
-
-
Stepanauskas, R.1
-
7
-
-
84861962107
-
Single cell genome sequencing
-
Yilmaz S, Singh AK (2012) Single cell genome sequencing. Curr Opin Biotechnol 23(3): 437-443. doi:10.1016/j.copbio.2011.11.018
-
(2012)
Curr Opin Biotechnol
, vol.23
, Issue.3
, pp. 437-443
-
-
Yilmaz, S.1
Singh, A.K.2
-
8
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
Navin N, Kendall J, Troge J, Andrews P, Rodgers L, McIndoo J, Cook K, Stepansky A, Levy D, Esposito D, Muthuswamy L, Krasnitz A, McCombie WR, Hicks J, Wigler M (2011) Tumour evolution inferred by single-cell sequencing. Nature 472(7341):90-94.doi: http://www.nature.com/nature/journal/v472/n7341/abs/10.1038-nature09807-unlocked.html#supplementary-information
-
(2011)
Nature
, vol.472
, Issue.7341
, pp. 90-94
-
-
Navin, N.1
Kendall, J.2
Troge, J.3
Rews, P.4
Rodgers, L.5
McIndoo, J.6
Cook, K.7
Stepansky, A.8
Levy, D.9
Esposito, D.10
Muthuswamy, L.11
Krasnitz, A.12
McCombie, W.R.13
Hicks, J.14
Wigler, M.15
-
9
-
-
84877865227
-
Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing
-
Heitzer E, Auer M, Gasch C, Pichler M, Ulz P, Hoffmann EM, Lax S, Waldispuehl-Geigl J, Mauermann O, Lackner C, Höfler G, Eisner F, Sill H, Samonigg H, Pantel K, Riethdorf S, Bauernhofer T, Geigl JB, Speicher MR (2013) Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing. Cancer Res 73(10):2965-2975. doi:10.1158/0008-5472.can-12-4140
-
(2013)
Cancer Res
, vol.73
, Issue.10
, pp. 2965-2975
-
-
Heitzer, E.1
Auer, M.2
Gasch, C.3
Pichler, M.4
Ulz, P.5
Hoffmann, E.M.6
Lax, S.7
Waldispuehl-Geigl, J.8
Mauermann, O.9
Lackner, C.10
Höfler, G.11
Eisner, F.12
Sill, H.13
Samonigg, H.14
Pantel, K.15
Riethdorf, S.16
Bauernhofer, T.17
Geigl, J.B.18
Speicher, M.R.19
-
10
-
-
84882455458
-
Single-cell sequencing-based technologies will revolutionize whole-organism science
-
Shapiro E, Biezuner T, Linnarsson S (2013) Single-cell sequencing-based technologies will revolutionize whole-organism science. Nat Rev Genet 14(9):618-630. doi:10.1038/nrg3542
-
(2013)
Nat Rev Genet
, vol.14
, Issue.9
, pp. 618-630
-
-
Shapiro, E.1
Biezuner, T.2
Linnarsson, S.3
-
11
-
-
0026755807
-
Whole genome amplification from a single cell: Implications for genetic analysis
-
Zhang L, Cui X, Schmitt K, Hubert R, Navidi W, Arnheim N (1992) Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci U S A 89(13):5847-5851
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, Issue.13
, pp. 5847-5851
-
-
Zhang, L.1
Cui, X.2
Schmitt, K.3
Hubert, R.4
Navidi, W.5
Arnheim, N.6
-
12
-
-
0026736251
-
Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer
-
Telenius H, Carter N, Bebb C, Nordenskjold M, Ponder B, Tunnacliffe A (1992) Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13(3):718-725
-
(1992)
Genomics
, vol.13
, Issue.3
, pp. 718-725
-
-
Telenius, H.1
Carter, N.2
Bebb, C.3
Nordenskjold, M.4
Ponder, B.5
Tunnacliffe, A.6
-
13
-
-
18344396798
-
Comprehensive human genome amplification using multiple displacement amplification
-
Dean F, Hosono S, Fang L, Wu X, Faruqi A, Bray-Ward P, Sun Z, Zong Q, Du Y, Du J (2002) Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A 99(8): 5261-5266
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.8
, pp. 5261-5266
-
-
Dean, F.1
Hosono, S.2
Fang, L.3
Wu, X.4
Faruqi, A.5
Bray-Ward, P.6
Sun, Z.7
Zong, Q.8
Du, Y.9
Du, J.10
-
14
-
-
0037315428
-
Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH
-
Lage J, Leamon J, Pejovic T, Hamann S, Lacey M, Dillon D, Segraves R, Vossbrinck B, Gonzalez A, Pinkel D, Albertson D, Costa J, Lizardi P (2003) Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Res 13:294-307
-
(2003)
Genome Res
, vol.13
, pp. 294-307
-
-
Lage, J.1
Leamon, J.2
Pejovic, T.3
Hamann, S.4
Lacey, M.5
Dillon, D.6
Segraves, R.7
Vossbrinck, B.8
Gonzalez, A.9
Pinkel, D.10
Albertson, D.11
Costa, J.12
Lizardi, P.13
-
15
-
-
0031831323
-
Mutation detection and single-molecule counting using isothermal rolling-circle amplification
-
Lizardi PM, Huang X, Zhu Z, Bray-Ward P, Thomas DC, Ward DC (1998) Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat Genet 19(3):225-232. doi:10.1038/898
-
(1998)
Nat Genet
, vol.19
, Issue.3
, pp. 225-232
-
-
Lizardi, P.M.1
Huang, X.2
Zhu, Z.3
Bray-Ward, P.4
Thomas, D.C.5
Ward, D.C.6
-
16
-
-
84875864497
-
Whole-genome haplotyping by dilution, amplification, and sequencing
-
Kaper F, Swamy S, Klotzle B, Munchel S, Cottrell J, Bibikova M, Chuang H-Y, Kruglyak S, Ronaghi M, Eberle MA, Fan J-B (2013) Whole-genome haplotyping by dilution, amplification, and sequencing. Proc Natl Acad Sci 110(14):5552-5557. doi:10.1073/pnas.1218696110
-
(2013)
Proc Natl Acad Sci
, vol.110
, Issue.14
, pp. 5552-5557
-
-
Kaper, F.1
Swamy, S.2
Klotzle, B.3
Munchel, S.4
Cottrell, J.5
Bibikova, M.6
Chuang, H.-Y.7
Kruglyak, S.8
Ronaghi, M.9
Eberle, M.A.10
Fan, J.-B.11
-
17
-
-
9244263625
-
The use of whole genome amplification in the study of human disease
-
Hughes S, Arneson N, Done S, Squire J (2005) The use of whole genome amplification in the study of human disease. Prog Biophys Mol Biol 88(1):173-189.doi: http://dx.doi.org/10.1016/j.pbiomolbio.2004.01.007
-
(2005)
Prog Biophys Mol Biol
, vol.88
, Issue.1
, pp. 173-189
-
-
Hughes, S.1
Arneson, N.2
Done, S.3
Squire, J.4
-
18
-
-
0023769851
-
Fidelity of a human cell DNA replication complex
-
Roberts JD, Kunkel TA (1988) Fidelity of a human cell DNA replication complex. Proc Natl Acad Sci 85(19):7064-7068
-
(1988)
Proc Natl Acad Sci
, vol.85
, Issue.19
, pp. 7064-7068
-
-
Roberts, J.D.1
Kunkel, T.A.2
-
19
-
-
0345975560
-
Hypermutation at the immunoglobulin heavy chain locus in a pre-B-cell line
-
Wabl M, Burrows PD, von Gabain A, Steinberg C (1985) Hypermutation at the immunoglobulin heavy chain locus in a pre-B-cell line. Proc Natl Acad Sci U S A 82(2): 479-482
-
(1985)
Proc Natl Acad Sci U S A
, vol.82
, Issue.2
, pp. 479-482
-
-
Wabl, M.1
Burrows, P.D.2
Von Gabain, A.3
Steinberg, C.4
-
20
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
-
Kanagawa T (2003) Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96(4):317-323. doi:10.1016/S1389-1723(03)90130-7
-
(2003)
J Biosci Bioeng
, vol.96
, Issue.4
, pp. 317-323
-
-
Kanagawa, T.1
-
21
-
-
0031982528
-
Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
-
Head IM, Saunders JR, Pickup RW (1998) Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms. Microb Ecol 35(1): 1-21
-
(1998)
Microb Ecol
, vol.35
, Issue.1
, pp. 1-21
-
-
Head, I.M.1
Saunders, J.R.2
Pickup, R.W.3
-
22
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode F, Gobel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21(3):213-229
-
(1997)
FEMS Microbiol Rev
, vol.21
, Issue.3
, pp. 213-229
-
-
Von Wintzingerode, F.1
Gobel, U.B.2
Stackebrandt, E.3
-
23
-
-
12044254346
-
Surveys of gene families using polymerase chain-reaction - PCR selection and PCR drift
-
Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P, Wagner GP, Bartels J, Murtha M, Pendleton J (1994) Surveys of gene families using polymerase chain-reaction - PCR selection and PCR drift. Syst Biol 43(2):250-261. doi:10.2307/2413465
-
(1994)
Syst Biol
, vol.43
, Issue.2
, pp. 250-261
-
-
Wagner, A.1
Blackstone, N.2
Cartwright, P.3
Dick, M.4
Misof, B.5
Snow, P.6
Wagner, G.P.7
Bartels, J.8
Murtha, M.9
Pendleton, J.10
-
24
-
-
10444268966
-
Reevaluation and reduction of a PCR bias caused by reannealing of templates
-
Kurata S, Kanagawa T, Magariyama Y, Takatsu K, Yamada K, Yokomaku T, Kamagata Y (2004) Reevaluation and reduction of a PCR bias caused by reannealing of templates. Appl Environ Microbiol 70:7545-7549
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 7545-7549
-
-
Kurata, S.1
Kanagawa, T.2
Magariyama, Y.3
Takatsu, K.4
Yamada, K.5
Yokomaku, T.6
Kamagata, Y.7
-
25
-
-
0035432220
-
Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR
-
Ishii K, Fukui M (2001) Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR. Appl Environ Microbiol 67(8):3753-3755. doi:10.1128/AEM.67.8.3753-3755.2001
-
(2001)
Appl Environ Microbiol
, vol.67
, Issue.8
, pp. 3753-3755
-
-
Ishii, K.1
Fukui, M.2
-
26
-
-
0037225001
-
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methano-genic pure cultures and soil DNA extracts
-
Lueders T, Friedrich MW (2003) Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methano-genic pure cultures and soil DNA extracts. Appl Environ Microbiol 69(1):320-326
-
(2003)
Appl Environ Microbiol
, vol.69
, Issue.1
, pp. 320-326
-
-
Lueders, T.1
Friedrich, M.W.2
-
27
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz M, Cavanaugh C (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64:3724-3730
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3724-3730
-
-
Polz, M.1
Cavanaugh, C.2
-
28
-
-
0029859948
-
Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies
-
Zheng D, Alm EW, Stahl DA, Raskin L (1996) Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol 62(12):4504-513
-
(1996)
Appl Environ Microbiol
, vol.62
, Issue.12
, pp. 4504-4513
-
-
Zheng, D.1
Alm, E.W.2
Stahl, D.A.3
Raskin, L.4
-
29
-
-
33845752963
-
Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation
-
Arriola E, Lambros M, Jones C, Dexter T, Mackay A, Tan D, Tamber N, Fenwick K, Ashworth A, Dowsett M (2007) Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation. Lab Invest 87(1):75-83
-
(2007)
Lab Invest
, vol.87
, Issue.1
, pp. 75-83
-
-
Arriola, E.1
Lambros, M.2
Jones, C.3
Dexter, T.4
Mackay, A.5
Tan, D.6
Tamber, N.7
Fenwick, K.8
Ashworth, A.9
Dowsett, M.10
-
30
-
-
18744413535
-
Amplification of whole tumor genomes and gene-by-gene mapping of genomic aberrations from limited sources of fresh-frozen and paraffin-embedded DNA
-
Bredel M, Bredel C, Juric D, Kim Y, Vogel H, Harsh GR, Recht LD, Pollack JR, Sikic BI (2005) Amplification of whole tumor genomes and gene-by-gene mapping of genomic aberrations from limited sources of fresh-frozen and paraffin-embedded DNA. J Mol Diagn 7(2):171-182. doi:10.1016/S1525-1578(10)60543-0
-
(2005)
J Mol Diagn
, vol.7
, Issue.2
, pp. 171-182
-
-
Bredel, M.1
Bredel, C.2
Juric, D.3
Kim, Y.4
Vogel, H.5
Harsh, G.R.6
Recht, L.D.7
Pollack, J.R.8
Sikic, B.I.9
-
31
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki M, Giovannoni S (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 625-630
-
-
Suzuki, M.1
Giovannoni, S.2
-
32
-
-
0031842162
-
Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region
-
Hansen MC, Tolker-Nielsen T, Givskov M, Molin S (1998) Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol Ecol26(2):141-149. doi:10.1111/j.1574-6941.1998.tb00500.x
-
(1998)
FEMS Microbiol Ecol26(2)
, pp. 141-149
-
-
Hansen, M.C.1
Tolker-Nielsen, T.2
Givskov, M.3
Molin, S.4
-
33
-
-
0029967167
-
DNA rehybridiza-tion during PCR: The 'Cot effect' and its consequences
-
Mathieu-Daude F, Welsh J, Vogt T, McClelland M (1996) DNA rehybridiza-tion during PCR: the 'Cot effect' and its consequences. Nucleic Acids Res 24(11): 2080-2086
-
(1996)
Nucleic Acids Res
, vol.24
, Issue.11
, pp. 2080-2086
-
-
Mathieu-Daude, F.1
Welsh, J.2
Vogt, T.3
McClelland, M.4
-
34
-
-
23944509929
-
Improved PCR method for amplification of GC-rich DNA sequences
-
Hube F, Reverdiau P, Iochmann S, Gruel Y (2005) Improved PCR method for amplification of GC-rich DNA sequences. Mol Biotechnol 31(1):81-84.doi:10.1385/MB:31:1:081
-
(2005)
Mol Biotechnol
, vol.31
, Issue.1
, pp. 81-84
-
-
Hube, F.1
Reverdiau, P.2
Iochmann, S.3
Gruel, Y.4
-
35
-
-
0037022677
-
Genome complexity reduction for SNP genotyping analysis
-
Jordan B, Charest A, Dowd J, Blumenstiel J, Yeh Rf R, Osman A, Housman D, Landers J (2002) Genome complexity reduction for SNP genotyping analysis. Proc Natl Acad Sci U S A 99:2942-2947
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 2942-2947
-
-
Jordan, B.1
Charest, A.2
Dowd, J.3
Blumenstiel, J.4
Yeh Rf, R.5
Osman, A.6
Housman, D.7
Landers, J.8
-
36
-
-
77953807223
-
One bacterial cell, one complete genome
-
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF (2010) One bacterial cell, one complete genome. PLoS One 5(4): e10314. doi:10.1371/journal.pone.0010314
-
(2010)
Plos One
, vol.5
, Issue.4
-
-
Woyke, T.1
Tighe, D.2
Mavromatis, K.3
Clum, A.4
Copeland, A.5
Schackwitz, W.6
Lapidus, A.7
Wu, D.8
McCutcheon, J.P.9
McDonald, B.R.10
Moran, N.A.11
Bristow, J.12
Cheng, J.F.13
-
37
-
-
0014413352
-
Kinetics of renaturation of DNA
-
Wetmur JG, Davidson N (1968) Kinetics of renaturation of DNA. J Mol Biol 31(3): 349-370
-
(1968)
J Mol Biol
, vol.31
, Issue.3
, pp. 349-370
-
-
Wetmur, J.G.1
Davidson, N.2
-
38
-
-
0032528128
-
Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR
-
McDowell DG, Burns NA, Parkes HC (1998) Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR. Nucleic Acids Res 26(14):3340-3347
-
(1998)
Nucleic Acids Res
, vol.26
, Issue.14
, pp. 3340-3347
-
-
McDowell, D.G.1
Burns, N.A.2
Parkes, H.C.3
-
39
-
-
0242475336
-
Whole genome amplification: Abundant supplies of DNA from precious samples or clinical specimens
-
Lasken R Egholm M (2003) Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 21:531-535
-
(2003)
Trends Biotechnol
, vol.21
, pp. 531-535
-
-
Lasken R Egholm, M.1
-
40
-
-
25744448618
-
Regionalized GC content of template DNA as a predictor of PCR success
-
Benita Y, Oosting R, Lok M, Wise M, Humphery-Smith I (2003) Regionalized GC content of template DNA as a predictor of PCR success. Nucleic Acids Res 31:e99
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Benita, Y.1
Oosting, R.2
Lok, M.3
Wise, M.4
Humphery-Smith, I.5
-
41
-
-
34248199933
-
Amplification of GC-rich genes by following a combination strategy of primer design, enhancers and modified PCR cycle conditions
-
Sahdev S, Saini S, Tiwari P, Saxena S, Singh Saini K (2007) Amplification of GC-rich genes by following a combination strategy of primer design, enhancers and modified PCR cycle conditions. Mol Cell Probes 21(4):303-307, http://dx.doi.org/10.1016/j.mcp.2007.03.004
-
(2007)
Mol Cell Probes
, vol.21
, Issue.4
, pp. 303-307
-
-
Sahdev, S.1
Saini, S.2
Tiwari, P.3
Saxena, S.4
Singh Saini, K.5
-
42
-
-
2442646694
-
Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification
-
Paez J, Lin M, Beroukhim R, Lee J, Zhao X, Richter D, Gabriel S, Herman P, Sasaki H, Altshuler D, Li C, Meyerson M, Sellers W (2004) Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Res 32:e71
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Paez, J.1
Lin, M.2
Beroukhim, R.3
Lee, J.4
Zhao, X.5
Richter, D.6
Gabriel, S.7
Herman, P.8
Sasaki, H.9
Altshuler, D.10
Li, C.11
Meyerson, M.12
Sellers, W.13
-
43
-
-
33748591589
-
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
-
Pinard R, de Winter A, Sarkis GJ, Gerstein MB, Tartaro KR, Plant RN, Egholm M, Rothberg JM, Leamon JH (2006) Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics 7:216. doi:10.1186/1471-2164-7-216
-
(2006)
BMC Genomics
, vol.7
, pp. 216
-
-
Pinard, R.1
De Winter, A.2
Sarkis, G.J.3
Gerstein, M.B.4
Tartaro, K.R.5
Plant, R.N.6
Egholm, M.7
Rothberg, J.M.8
Leamon, J.H.9
-
44
-
-
77049097608
-
Specific and complete human genome amplification with improved yield achieved by phi29 DNA polymerase and a novel primer at elevated temperature
-
Alsmadi O, Alkayal F, Monies D, Meyer BF (2009) Specific and complete human genome amplification with improved yield achieved by phi29 DNA polymerase and a novel primer at elevated temperature. BMC Res Notes 2:48. doi:10.1186/1756-0500-2-48
-
(2009)
BMC Res Notes
, vol.2
, pp. 48
-
-
Alsmadi, O.1
Alkayal, F.2
Monies, D.3
Meyer, B.F.4
-
45
-
-
0026794170
-
Differential amplification of rRNA genes by polymerase chain reaction
-
Reysenbach AL, Giver LJ, Wickham GS, Pace NR (1992) Differential amplification of rRNA genes by polymerase chain reaction. Appl Environ Microbiol 58(10):3417-3418
-
(1992)
Appl Environ Microbiol
, vol.58
, Issue.10
, pp. 3417-3418
-
-
Reysenbach, A.L.1
Giver, L.J.2
Wickham, G.S.3
Pace, N.R.4
-
46
-
-
0029020740
-
PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonality studies
-
Multer GL, Boynton KA (1995) PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonality studies. Nucleic Acids Res 23(8):1411-1418. doi:10.1093/nar/23.8.1411
-
(1995)
Nucleic Acids Res
, vol.23
, Issue.8
, pp. 1411-1418
-
-
Multer, G.L.1
Boynton, K.A.2
-
47
-
-
0842265257
-
Specificity and performance of PCR detection assays for microbial pathogens
-
Sachse K (2004) Specificity and performance of PCR detection assays for microbial pathogens. Mol Biotechnol 26(1):61-80.doi:10.1385/MB:26:1:61
-
(2004)
Mol Biotechnol
, vol.26
, Issue.1
, pp. 61-80
-
-
Sachse, K.1
-
48
-
-
34247098019
-
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
-
Sipos R, Szekely AJ, Palatinszky M, Revesz S, Marialigeti K, Nikolausz M (2007) Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis. FEMS Microbiol Ecol 60(2):341-350. doi:10.1111/j.1574-6941.2007.00283.x
-
(2007)
FEMS Microbiol Ecol
, vol.60
, Issue.2
, pp. 341-350
-
-
Sipos, R.1
Szekely, A.J.2
Palatinszky, M.3
Revesz, S.4
Marialigeti, K.5
Nikolausz, M.6
-
49
-
-
0033551238
-
Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells
-
Klein CA, Schmidt-Kittler O, Schardt JA, Pantel K, Speicher MR, Riethmuller G (1999) Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc Natl Acad Sci U S A 96(8):4494-4499
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.8
, pp. 4494-4499
-
-
Klein, C.A.1
Schmidt-Kittler, O.2
Schardt, J.A.3
Pantel, K.4
Speicher, M.R.5
Riethmuller, G.6
-
50
-
-
4444226427
-
Whole genome amplification for CGH analysis: Linker-adapter PCR as the method of choice for difficult and limited samples
-
Pirker C, Raidl M, Steiner E, Elbling L, Holzmann K, Spiegl-Kreinecker S, Aubele M, Grasl-Kraupp B, Marosi C, Micksche M, Berger W (2004) Whole genome amplification for CGH analysis: Linker-adapter PCR as the method of choice for difficult and limited samples. Cytometry A 61(1):26-34
-
(2004)
Cytometry A
, vol.61
, Issue.1
, pp. 26-34
-
-
Pirker, C.1
Raidl, M.2
Steiner, E.3
Elbling, L.4
Holzmann, K.5
Spiegl-Kreinecker, S.6
Aubele, M.7
Grasl-Kraupp, B.8
Marosi, C.9
Micksche, M.10
Berger, W.11
-
51
-
-
36549023365
-
Back to the future: Museum specimens in population genetics
-
Wandeler P, Hoeck PEA, Keller LF (2007) Back to the future: museum specimens in population genetics. Trends Ecol Evol 22(12): 634-642, http://dx.doi.org/10.1016/j.tree.2007.08.017
-
(2007)
Trends Ecol Evol
, vol.22
, Issue.12
, pp. 634-642
-
-
Wandeler, P.1
Hoeck, P.2
Keller, L.F.3
-
52
-
-
55349105499
-
DNA damage in preserved specimens and tissue samples: A molecular assessment
-
Zimmermann J, Hajibabaei M, Blackburn D, Hanken J, Cantin E, Posfai J, Evans T (2008) DNA damage in preserved specimens and tissue samples: a molecular assessment. Front Zool 5(1):18
-
(2008)
Front Zool
, vol.5
, Issue.1
, pp. 18
-
-
Zimmermann, J.1
Hajibabaei, M.2
Blackburn, D.3
Hanken, J.4
Cantin, E.5
Posfai, J.6
Evans, T.7
-
53
-
-
32544451176
-
Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae
-
Krause J, Dear PH, Pollack JL, Slatkin M, Spriggs H, Barnes I, Lister AM, Ebersberger I, Paabo S, Hofreiter M (2006) Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature 439(7077):724-727. doi:10.1038/nature04432
-
(2006)
Nature
, vol.439
, Issue.7077
, pp. 724-727
-
-
Krause, J.1
Dear, P.H.2
Pollack, J.L.3
Slatkin, M.4
Spriggs, H.5
Barnes, I.6
Lister, A.M.7
Ebersberger, I.8
Paabo, S.9
Hofreiter, M.10
-
54
-
-
33751077282
-
Analysis of one million base pairs of Neanderthal DNA
-
Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, Simons JF, Du L, Egholm M, Rothberg JM, Paunovic M, Paabo S (2006) Analysis of one million base pairs of Neanderthal DNA. Nature 444(7117):330-336. doi:10.1038/nature05336
-
(2006)
Nature
, vol.444
, Issue.7117
, pp. 330-336
-
-
Green, R.E.1
Krause, J.2
Ptak, S.E.3
Briggs, A.W.4
Ronan, M.T.5
Simons, J.F.6
Du, L.7
Egholm, M.8
Rothberg, J.M.9
Paunovic, M.10
Paabo, S.11
-
55
-
-
0342471758
-
Molecular analysis of Neanderthal DNA from the northern Caucasus
-
Ovchinnikov IV, Gotherstrom A, Romanova GP, Kharitonov VM, Liden K, Goodwin W (2000) Molecular analysis of Neanderthal DNA from the northern Caucasus. Nature 404(6777):490-93. doi:10.1038/35006625
-
(2000)
Nature
, vol.404
, Issue.6777
, pp. 490-493
-
-
Ovchinnikov, I.V.1
Gotherstrom, A.2
Romanova, G.P.3
Kharitonov, V.M.4
Liden, K.5
Goodwin, W.6
-
56
-
-
0021802416
-
Molecular cloning of Ancient Egyptian mummy DNA
-
Paabo S (1985) Molecular cloning of Ancient Egyptian mummy DNA. Nature 314(6012): 644-645
-
(1985)
Nature
, vol.314
, Issue.6012
, pp. 644-645
-
-
Paabo, S.1
-
57
-
-
34347216401
-
The origin and virulence of the 1918 "Spanish" influenza virus
-
Taubenberger JK (2006) The origin and virulence of the 1918 "Spanish" influenza virus. Proc Am Philos Soc 150(1):86-112
-
(2006)
Proc am Philos Soc
, vol.150
, Issue.1
, pp. 86-112
-
-
Taubenberger, J.K.1
-
58
-
-
0030987210
-
Initial genetic characterization of the 1918 "Spanish" influenza virus
-
Taubenberger JK, Reid AH, Krafft AE, Bijwaard KE, Fanning TG (1997) Initial genetic characterization of the 1918 "Spanish" influenza virus. Science 275(5307): 1793-1796
-
(1997)
Science
, vol.275
, Issue.5307
, pp. 1793-1796
-
-
Taubenberger, J.K.1
Reid, A.H.2
Krafft, A.E.3
Bijwaard, K.E.4
Fanning, T.G.5
-
59
-
-
0024970684
-
Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology
-
Paabo S, Higuchi RG, Wilson AC (1989) Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology. J Bio Chem 264(17):9709-9712
-
(1989)
J Bio Chem
, vol.264
, Issue.17
, pp. 9709-9712
-
-
Paabo, S.1
Higuchi, R.G.2
Wilson, A.C.3
-
60
-
-
0000832946
-
Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification
-
Paabo S (1989) Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification. Proc Natl Acad Sci U S A 86(6):1939-1943
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, Issue.6
, pp. 1939-1943
-
-
Paabo, S.1
-
62
-
-
0027272118
-
Purification of forensic specimens for the polymerase chain reaction (PCR) analysis
-
Akane A, Shiono H, Matsubara K, Nakamura H, Hasegawa M, Kagawa M (1993) Purification of forensic specimens for the polymerase chain reaction (PCR) analysis. J Forensic Sci 38(3):691-701
-
(1993)
J Forensic Sci
, vol.38
, Issue.3
, pp. 691-701
-
-
Akane, A.1
Shiono, H.2
Matsubara, K.3
Nakamura, H.4
Hasegawa, M.5
Kagawa, M.6
-
63
-
-
0027402710
-
Extraction, evaluation, and amplification of DNA from decalcified and undecalci-fied United States Civil War bone
-
Fisher DL, Holland MM, Mitchell L, Sledzik PS, Wilcox AW, Wadhams M, Weedn VW (1993) Extraction, evaluation, and amplification of DNA from decalcified and undecalci-fied United States Civil War bone. J Forensic Sci 38(1):60-68
-
(1993)
J Forensic Sci
, vol.38
, Issue.1
, pp. 60-68
-
-
Fisher, D.L.1
Holland, M.M.2
Mitchell, L.3
Sledzik, P.S.4
Wilcox, A.W.5
Wadhams, M.6
Weedn, V.W.7
-
64
-
-
0030444780
-
Effect of highly fragmented DNA on PCR
-
Golenberg EM, Bickel A, Weihs P (1996) Effect of highly fragmented DNA on PCR. Nucleic Acids Res 24(24):5026-5033. doi:10.1093/nar/24.24.5026
-
(1996)
Nucleic Acids Res
, vol.24
, Issue.24
, pp. 5026-5033
-
-
Golenberg, E.M.1
Bickel, A.2
Weihs, P.3
-
65
-
-
33846492471
-
Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues
-
Aviel-Ronen S, Qi Zhu C, Coe BP, Liu N, Watson SK, Lam WL, Tsao MS (2006) Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues. BMC Genomics 7:312. doi:10.1186/1471-2164-7-312
-
(2006)
BMC Genomics
, vol.7
, pp. 312
-
-
Aviel-Ronen, S.1
Qi Zhu, C.2
Coe, B.P.3
Liu, N.4
Watson, S.K.5
Lam, W.L.6
Tsao, M.S.7
-
66
-
-
17944390807
-
Optimisation of DNA and RNA extraction from archival formalin-fixed tissue
-
Coombs NJ, Gough AC, Primrose JN (1999) Optimisation of DNA and RNA extraction from archival formalin-fixed tissue. Nucleic Acids Res 27(16):e12
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.16
-
-
Coombs, N.J.1
Gough, A.C.2
Primrose, J.N.3
-
67
-
-
0036898005
-
Effect of fixatives and tissue processing on the content and integrity of nucleic acids
-
Srinivasan M, Sedmak D, Jewell S (2002) Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 161(6):1961-1971. doi:10.1016/s0002-9440(10)64472-0
-
(2002)
Am J Pathol
, vol.161
, Issue.6
, pp. 1961-1971
-
-
Srinivasan, M.1
Sedmak, D.2
Jewell, S.3
-
68
-
-
0025003134
-
Fundamental study on the mechanism of DNA degradation in tissues fixed in formaldehyde
-
Tokuda Y, Nakamura T, Satonaka K, Maeda S, Doi K, Baba S, Sugiyama T (1990) Fundamental study on the mechanism of DNA degradation in tissues fixed in formaldehyde. J Clin Pathol 43(9):748-751
-
(1990)
J Clin Pathol
, vol.43
, Issue.9
, pp. 748-751
-
-
Tokuda, Y.1
Nakamura, T.2
Satonaka, K.3
Maeda, S.4
Doi, K.5
Baba, S.6
Sugiyama, T.7
-
69
-
-
0032755991
-
A high frequency of sequence alterations is due to formalin fixation of archival specimens
-
Williams C, Ponten F, Moberg C, Soderkvist P, Uhlen M, Ponten J, Sitbon G, Lundeberg J (1999) A high frequency of sequence alterations is due to formalin fixation of archival specimens. Am J Pathol 155(5):1467-1471. doi:10.1016/s0002-9440(10)65461-2
-
(1999)
Am J Pathol
, vol.155
, Issue.5
, pp. 1467-1471
-
-
Williams, C.1
Ponten, F.2
Moberg, C.3
Soderkvist, P.4
Uhlen, M.5
Ponten, J.6
Sitbon, G.7
Lundeberg, J.8
-
70
-
-
0032486094
-
DNA damage caused by common cytological fixatives
-
Douglas MP, Rogers SO (1998) DNA damage caused by common cytological fixatives. Mutat Res 401(1-2):77-88
-
(1998)
Mutat Res
, vol.401
, Issue.1-2
, pp. 77-88
-
-
Douglas, M.P.1
Rogers, S.O.2
-
71
-
-
0017409165
-
Formaldehyde as a probe of DNA structure. 3. Equilibrium denaturation of DNA and synthetic polynucleotides
-
McGhee JD, von Hippel PH (1977) Formaldehyde as a probe of DNA structure. 3. Equilibrium denaturation of DNA and synthetic polynucleotides. Biochemistry 16(15): 3267-3276
-
(1977)
Biochemistry
, vol.16
, Issue.15
, pp. 3267-3276
-
-
McGhee, J.D.1
Von Hippel, P.H.2
-
72
-
-
84874533657
-
Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping
-
Beadling C, Neff TL, Heinrich MC, Rhodes K, Thornton M, Leamon J, Andersen M, Corless CL (2013) Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping. J Mol Diagn 15(2):171-176. doi:10.1016/j.jmoldx.2012.09.003
-
(2013)
J Mol Diagn
, vol.15
, Issue.2
, pp. 171-176
-
-
Beadling, C.1
Neff, T.L.2
Heinrich, M.C.3
Rhodes, K.4
Thornton, M.5
Leamon, J.6
Ersen, M.7
Corless, C.L.8
-
73
-
-
79959758185
-
Combined molecular genetic and cytogenetic analysis from single cells after isothermal whole-genome amplification
-
Kroneis T, Geigl JB, El-Heliebi A, Auer M, Ulz P, Schwarzbraun T, Dohr G, Sedlmayr P (2011) Combined molecular genetic and cytogenetic analysis from single cells after isothermal whole-genome amplification. Clin Chem 57(7):1032-1041
-
(2011)
Clin Chem
, vol.57
, Issue.7
, pp. 1032-1041
-
-
Kroneis, T.1
Geigl, J.B.2
El-Heliebi, A.3
Auer, M.4
Ulz, P.5
Schwarzbraun, T.6
Dohr, G.7
Sedlmayr, P.8
-
74
-
-
77956095528
-
Whole-community genome amplification (WCGA) leads to compositional bias in methane-oxidizing communities as assessed by pmoA-based microarray analyses and QPCR
-
Bodelier PLE, Kamst M, Meima-Franke M, Stralis-Pavese N, Bodrossy L (2009) Whole-community genome amplification (WCGA) leads to compositional bias in methane-oxidizing communities as assessed by pmoA-based microarray analyses and QPCR. Environ Microbiol Rep 1(5):434-441. doi:10.1111/j.1758-2229.2009.00066.x
-
(2009)
Environ Microbiol Rep
, vol.1
, Issue.5
, pp. 434-441
-
-
Bodelier, P.1
Kamst, M.2
Meima-Franke, M.3
Stralis-Pavese, N.4
Bodrossy, L.5
-
75
-
-
0034830935
-
Rapid amplification of plasmid and phage DNA using Phi29 polymerase and a multiply-pimed rolling circle amplification
-
Dean F, Nelson J, Giesler T, Lasken R (2001) Rapid amplification of plasmid and phage DNA using Phi29 polymerase and a multiply-pimed rolling circle amplification. Genome Res 11:1095-1099
-
(2001)
Genome Res
, vol.11
, pp. 1095-1099
-
-
Dean, F.1
Nelson, J.2
Giesler, T.3
Lasken, R.4
-
76
-
-
33646559836
-
Environmental whole-genome amplification to access microbial populations in contaminated sediments
-
Abulencia C, Wyborski D, Garcia J, Podar M, Chen W, Chang S, Chang H, Watson D, Brodie E, Hazen T, Keller M (2006) Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol 72:3291-3301
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3291-3301
-
-
Abulencia, C.1
Wyborski, D.2
Garcia, J.3
Podar, M.4
Chen, W.5
Chang, S.6
Chang, H.7
Watson, D.8
Brodie, E.9
Hazen, T.10
Keller, M.11
-
77
-
-
0003749544
-
Elements of large-sample theory
-
Springer, New York, NY
-
Lehmann EL (1999) Elements of large-sample theory, Springer texts in statistics. Springer, New York, NY
-
(1999)
Springer Texts in Statistics
-
-
Lehmann, E.L.1
-
78
-
-
0029020740
-
PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonal-ity studies
-
Mutter GL, Boynton KA (1995) PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonal-ity studies. Nucleic Acids Res 23(8): 1411-1418
-
(1995)
Nucleic Acids Res
, vol.23
, Issue.8
, pp. 1411-1418
-
-
Mutter, G.L.1
Boynton, K.A.2
-
79
-
-
0026865024
-
Preferential PCR amplification of alleles: Mechanisms and solutions
-
Walsh PS, Erlich HA, Higuchi R (1992) Preferential PCR amplification of alleles: mechanisms and solutions. PCR Methods Appl 1(4):241-250
-
(1992)
PCR Methods Appl
, vol.1
, Issue.4
, pp. 241-250
-
-
Walsh, P.S.1
Erlich, H.A.2
Higuchi, R.3
-
80
-
-
0031558558
-
Theoretical description of the polymerase chain reaction
-
Schnell S, Mendoza C (1997) Theoretical description of the polymerase chain reaction. J Theor Biol 188(3):313-318. doi:10.1006/jtbi.1997.0473
-
(1997)
J Theor Biol
, vol.188
, Issue.3
, pp. 313-318
-
-
Schnell, S.1
Mendoza, C.2
-
81
-
-
0031581804
-
Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction (QC-PCR)
-
Schnell S, Mendoza C (1997) Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction (QC-PCR). J Theor Biol 184(4): 433-440
-
(1997)
J Theor Biol
, vol.184
, Issue.4
, pp. 433-440
-
-
Schnell, S.1
Mendoza, C.2
-
82
-
-
44449099134
-
A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR
-
Rutledge R, Stewart D (2008) A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR. BMC Biotechnol 8(1):47
-
(2008)
BMC Biotechnol
, vol.8
, Issue.1
, pp. 47
-
-
Rutledge, R.1
Stewart, D.2
-
83
-
-
0142092731
-
Random variation and concentration effects in PCR
-
Jagers P, Klebaner F (2003) Random variation and concentration effects in PCR. J Theor Biol 224(3):299-304
-
(2003)
J Theor Biol
, vol.224
, Issue.3
, pp. 299-304
-
-
Jagers, P.1
Klebaner, F.2
-
84
-
-
0029935969
-
Theoretical uncertainty of measurements using quantitative polymerase chain reaction
-
Peccoud J, Jacob C (1996) Theoretical uncertainty of measurements using quantitative polymerase chain reaction. Biophys J 71(1):101-108. doi:10.1016/S0006-3495(96)79205-6
-
(1996)
Biophys J
, vol.71
, Issue.1
, pp. 101-108
-
-
Peccoud, J.1
Jacob, C.2
-
85
-
-
0028025074
-
An invariant T cell receptor alpha chain is used by a unique subset of major histocompatibility complex class I-specific CD4+ and CD4-8- T cells in mice and humans
-
Lantz O, Bendelac A (1994) An invariant T cell receptor alpha chain is used by a unique subset of major histocompatibility complex class I-specific CD4+ and CD4-8- T cells in mice and humans. J Exp Med 180(3): 1097-1106
-
(1994)
J Exp Med
, vol.180
, Issue.3
, pp. 1097-1106
-
-
Lantz, O.1
Bendelac, A.2
-
86
-
-
0028999769
-
In situ isolation of mRNA from individual plant cells: Creation of cell-specific cDNA libraries
-
Karrer EE, Lincoln JE, Hogenhout S, Bennett AB, Bostock RM, Martineau B, Lucas WJ, Gilchrist DG, Alexander D (1995) In situ isolation of mRNA from individual plant cells: creation of cell-specific cDNA libraries. Proc Natl Acad Sci U S A 92(9):3814-3818
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, Issue.9
, pp. 3814-3818
-
-
Karrer, E.E.1
Lincoln, J.E.2
Hogenhout, S.3
Bennett, A.B.4
Bostock, R.M.5
Martineau, B.6
Lucas, W.J.7
Gilchrist, D.G.8
Alexander, D.9
-
87
-
-
59849099685
-
The low-template-DNA (Stochastic) threshold— Its determination relative to risk analysis for national DNA databases
-
Gill P, Puch-Solis R, Curran J (2009) The low-template-DNA (stochastic) threshold— Its determination relative to risk analysis for national DNA databases. Forensic Sci Int Genet 3(2):104-111, http://dx.doi.org/10.1016/j.fsigen.2008.11.009
-
(2009)
Forensic Sci Int Genet
, vol.3
, Issue.2
, pp. 104-111
-
-
Gill, P.1
Puch-Solis, R.2
Curran, J.3
-
88
-
-
0030769705
-
Development of guidelines to designate alleles using an STR multiplex system
-
Gill P, Sparkes R, Kimpton C (1997) Development of guidelines to designate alleles using an STR multiplex system. Forensic Sci Int 89(3):185-197
-
(1997)
Forensic Sci Int
, vol.89
, Issue.3
, pp. 185-197
-
-
Gill, P.1
Sparkes, R.2
Kimpton, C.3
-
89
-
-
0035582255
-
A comparison of the characteristics of profilesproduced with the AMPFlSTR SGM Plus multiplex system for both standard and low copy number (LCN) STR DNA analysis
-
Whitaker JP, Cotton EA, Gill P (2001) A comparison of the characteristics of profilesproduced with the AMPFlSTR SGM Plus multiplex system for both standard and low copy number (LCN) STR DNA analysis. Forensic Sci Int 123(2-3):215-223
-
(2001)
Forensic Sci Int
, vol.123
, Issue.2-3
, pp. 215-223
-
-
Whitaker, J.P.1
Cotton, E.A.2
Gill, P.3
-
90
-
-
0031149569
-
Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
-
Chandler DP, Fredrickson JK, Brockman FJ (1997) Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol Ecol 6(5):475-482. doi:10.1046/j.1365-294X.1997.00205.x
-
(1997)
Mol Ecol
, vol.6
, Issue.5
, pp. 475-482
-
-
Chandler, D.P.1
Fredrickson, J.K.2
Brockman, F.J.3
-
91
-
-
0038148733
-
Detailed investigation of factors influencing amplification efficiency and allele drop-out in single cell PCR: Implications for preimplantation genetic diagnosis
-
Piyamongkol W, Bermüdez MG, Harper JC, Wells D (2003) Detailed investigation of factors influencing amplification efficiency and allele drop-out in single cell PCR: implications for preimplantation genetic diagnosis. Mol Hum Reprod 9(7):411-420. doi:10.1093/molehr/gag051
-
(2003)
Mol Hum Reprod
, vol.9
, Issue.7
, pp. 411-420
-
-
Piyamongkol, W.1
Bermüdez, M.G.2
Harper, J.C.3
Wells, D.4
-
92
-
-
0033557235
-
Detailed chromosomal and molecular genetic analysis of single cells by whole genome amplification and comparative genomic hybridisation
-
Wells D, Sherlock J, Handyside A, Delhanty J (1999) Detailed chromosomal and molecular genetic analysis of single cells by whole genome amplification and comparative genomic hybridisation. Nucleic Acids Res 27:1214-1218
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1214-1218
-
-
Wells, D.1
Sherlock, J.2
Handyside, A.3
Delhanty, J.4
-
93
-
-
0029781585
-
Preimplantation diagnosis by whole-genome amplification, PCR amplification, and solid-phase minisequencing of blastomere DNA
-
Paunio T, Reima I, Syvanen A (1996) Preimplantation diagnosis by whole-genome amplification, PCR amplification, and solid-phase minisequencing of blastomere DNA. Clin Chem 42:1382-1390
-
(1996)
Clin Chem
, vol.42
, pp. 1382-1390
-
-
Paunio, T.1
Reima, I.2
Syvanen, A.3
-
94
-
-
28444460708
-
Evaluation of 3 methods of whole-genome amplification for subsequent metaphase comparative genomic hybridization
-
Ng G, Roberts I, Coleman N (2005) Evaluation of 3 methods of whole-genome amplification for subsequent metaphase comparative genomic hybridization. Diagn Mol Pathol 14(4):203-212
-
(2005)
Diagn Mol Pathol
, vol.14
, Issue.4
, pp. 203-212
-
-
Ng, G.1
Roberts, I.2
Coleman, N.3
-
95
-
-
45849153461
-
Genomic sequencing of single microbial cells from environmental samples
-
Ishoey T, Woyke T, Stepanauskas R, Novotny M, Lasken RS (2008) Genomic sequencing of single microbial cells from environmental samples. Curr Opin Microbiol 11(3):198-204, http://dx.doi.org/10.1016/j.mib.2008.05.006
-
(2008)
Curr Opin Microbiol
, vol.11
, Issue.3
, pp. 198-204
-
-
Ishoey, T.1
Woyke, T.2
Stepanauskas, R.3
Novotny, M.4
Lasken, R.S.5
-
96
-
-
65449134335
-
Assembling the marine metagenome, one cell at a time
-
Woyke T, Xie G, Copeland A, Gonzalez JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R (2009) Assembling the marine metagenome, one cell at a time. PLoS One 4(4):e5299. doi:10.1371/journal.pone.0005299
-
(2009)
Plos One
, vol.4
, Issue.4
-
-
Woyke, T.1
Xie, G.2
Copeland, A.3
Gonzalez, J.M.4
Han, C.5
Kiss, H.6
Saw, J.H.7
Senin, P.8
Yang, C.9
Chatterji, S.10
Cheng, J.F.11
Eisen, J.A.12
Sieracki, M.E.13
Stepanauskas, R.14
-
97
-
-
70149108769
-
Whole genome amplification and de novo assembly of single bacterial cells
-
Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW (2009) Whole genome amplification and de novo assembly of single bacterial cells. PLoS One 4(9): e6864. doi:10.1371/journal.pone.0006864
-
(2009)
Plos One
, vol.4
, Issue.9
-
-
Rodrigue, S.1
Malmstrom, R.R.2
Berlin, A.M.3
Birren, B.W.4
Henn, M.R.5
Chisholm, S.W.6
-
98
-
-
20444418081
-
Genomic DNA amplification from a single bacterium
-
Raghunathan A, Ferguson H, Bornarth C, Song W, Driscoll M, Lasken R (2005) Genomic DNA amplification from a single bacterium. Appl Environ Microbiol 71: 3342-3347
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3342-3347
-
-
Raghunathan, A.1
Ferguson, H.2
Bornarth, C.3
Song, W.4
Driscoll, M.5
Lasken, R.6
-
99
-
-
5044247324
-
Isothermal whole genome amplification from single and small numbers of cells: A new era for preimplantation genetic diagnosis of inherited disease
-
Handyside A, Robinson M, Simpson R, Omar M, Shaw M, Grudzinskas J, Rutherford A (2004) Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease. Mol Hum Reprod 10(10):767-772
-
(2004)
Mol Hum Reprod
, vol.10
, Issue.10
, pp. 767-772
-
-
Handyside, A.1
Robinson, M.2
Simpson, R.3
Omar, M.4
Shaw, M.5
Grudzinskas, J.6
Rutherford, A.7
-
100
-
-
14944380100
-
Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacement-based whole-genome amplification
-
Tzvetkov MV, Becker C, Kulle B, Nurnberg P, Brockmoller J, Wojnowski L (2005) Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacement-based whole-genome amplification. Electrophoresis 26(3):710-715. doi:10.1002/elps.200410121
-
(2005)
Electrophoresis
, vol.26
, Issue.3
, pp. 710-715
-
-
Tzvetkov, M.V.1
Becker, C.2
Kulle, B.3
Nurnberg, P.4
Brockmoller, J.5
Wojnowski, L.6
-
101
-
-
0027446875
-
Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization
-
Esteban JA, Salas M, Blanco L (1993) Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization. J Biol Chem 268(4): 2719-2726
-
(1993)
J Biol Chem
, vol.268
, Issue.4
, pp. 2719-2726
-
-
Esteban, J.A.1
Salas, M.2
Blanco, L.3
-
103
-
-
0024335104
-
Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication
-
Blanco L, Bernad A, Lazaro J, Martin G, Garmendia C, Salas M (1989) Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication. J Biol Chem 264(15): 8935-8940
-
(1989)
J Biol Chem
, vol.264
, Issue.15
, pp. 8935-8940
-
-
Blanco, L.1
Bernad, A.2
Lazaro, J.3
Martin, G.4
Garmendia, C.5
Salas, M.6
-
104
-
-
0029838624
-
PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases
-
Cline J, Braman JC, Hogrefe HH (1996) PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases. Nucleic Acids Res 24(18):3546-3551
-
(1996)
Nucleic Acids Res
, vol.24
, Issue.18
, pp. 3546-3551
-
-
Cline, J.1
Braman, J.C.2
Hogrefe, H.H.3
-
106
-
-
0028117341
-
A guide to the design and use of mismatched and degenerate primers
-
Kwok S, Chang SY, Sninsky JJ, Wang A (1994) A guide to the design and use of mismatched and degenerate primers. PCR Methods Appl 3(4):S39-S47
-
(1994)
PCR Methods Appl
, vol.3
, Issue.4
, pp. S39-S47
-
-
Kwok, S.1
Chang, S.Y.2
Sninsky, J.J.3
Wang, A.4
-
107
-
-
0027745555
-
Specificity, efficiency, and fidelity of PCR
-
Cha RS, Thilly WG (1993) Specificity, efficiency, and fidelity of PCR. PCR Methods Appl 3(3):18-29
-
(1993)
PCR Methods Appl
, vol.3
, Issue.3
, pp. 18-29
-
-
Cha, R.S.1
Thilly, W.G.2
-
108
-
-
83955165922
-
Nonspecific PCR amplification by high-fidelity polymerases: Implications for next-generation sequencing of AFLP markers
-
Brelsford A, Collin H, Perrin N, Fumagalli L (2012) Nonspecific PCR amplification by high-fidelity polymerases: implications for next-generation sequencing of AFLP markers. Mol Ecol Resour 12(1):123-127. doi:10.1111/j.1755-0998.2011.03063.x
-
(2012)
Mol Ecol Resour
, vol.12
, Issue.1
, pp. 123-127
-
-
Brelsford, A.1
Collin, H.2
Perrin, N.3
Fumagalli, L.4
-
109
-
-
29144445330
-
PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample
-
Acinas SG, Sarma-Rupavtarm R, Klepac-Ceraj V, Polz MF (2005) PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Appl Environ Microbiol 71(12):8966-8969. doi:10.1128/AEM.71.12.8966-8969.2005
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.12
, pp. 8966-8969
-
-
Acinas, S.G.1
Sarma-Rupavtarm, R.2
Klepac-Ceraj, V.3
Polz, M.F.4
-
110
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6(12), e27310. doi:10.1371/journal.pone.0027310
-
(2011)
Plos One
, vol.6
, Issue.12
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
111
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A (2011) Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 12(2):R18. doi:10.1186/gb-2011-12-2-r18
-
(2011)
Genome Biol
, vol.12
, Issue.2
, pp. R18
-
-
Aird, D.1
Ross, M.G.2
Chen, W.S.3
Danielsson, M.4
Fennell, T.5
Russ, C.6
Jaffe, D.B.7
Nusbaum, C.8
Gnirke, A.9
-
112
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. Elegans
-
Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang W, Magrini VJ, Richt RJ, Sander SN, Stewart DA, Stromberg M, Tsung EF, Wylie T, Schedl T, Wilson RK, Mardis ER (2008) Whole-genome sequencing and variant discovery in C. elegans. Nat Methods 5(2):183-188. doi:10.1038/nmeth.1179
-
(2008)
Nat Methods
, vol.5
, Issue.2
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
Dooling, D.4
Fewell, G.5
Barnett, D.6
Fox, P.7
Glasscock, J.I.8
Hickenbotham, M.9
Huang, W.10
Magrini, V.J.11
Richt, R.J.12
Sander, S.N.13
Stewart, D.A.14
Stromberg, M.15
Tsung, E.F.16
Wylie, T.17
Schedl, T.18
Wilson, R.K.19
Mardis, E.R.20
more..
-
113
-
-
34247489656
-
Mechanism of chimera formation during the multiple displacement amplification reaction
-
Lasken RS, Stockwell TB (2007) Mechanism of chimera formation during the multiple displacement amplification reaction. BMC Biotechnol 7:19. doi:10.1186/1472-6750-7-19
-
(2007)
BMC Biotechnol
, vol.7
, pp. 19
-
-
Lasken, R.S.1
Stockwell, T.B.2
-
114
-
-
33745085561
-
Sequencing genomes from single cells by polymerase cloning
-
Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM (2006) Sequencing genomes from single cells by polymerase cloning. Nat Biotech 24(6): 680-686, http://www.nature.com/nbt/journal/v24/n6/suppinfo/nbt1214_S1.html
-
(2006)
Nat Biotech
, vol.24
, Issue.6
, pp. 680-686
-
-
Zhang, K.1
Martiny, A.C.2
Reppas, N.B.3
Barry, K.W.4
Malek, J.5
Chisholm, S.W.6
Church, G.M.7
-
115
-
-
0027745825
-
Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions
-
Jensen MA, Straus N (1993) Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions. PCR Methods Appl 3(3): 186-194
-
(1993)
PCR Methods Appl
, vol.3
, Issue.3
, pp. 186-194
-
-
Jensen, M.A.1
Straus, N.2
-
116
-
-
0035145056
-
Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning
-
Qiu X, Wu L, Huang H, McDonel PE, Palumbo AV, Tiedje JM, Zhou J (2001) Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Appl Environ Microbiol 67(2):880-887. doi:10.1128/AEM.67.2.880-887.2001
-
(2001)
Appl Environ Microbiol
, vol.67
, Issue.2
, pp. 880-887
-
-
Qiu, X.1
Wu, L.2
Huang, H.3
McDonel, P.E.4
Palumbo, A.V.5
Tiedje, J.M.6
Zhou, J.7
-
117
-
-
0036566806
-
Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by 'reconditioning PCR'
-
Thompson JR, Marcelino LA, Polz MF (2002) Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res 30(9):2083-2088
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.9
, pp. 2083-2088
-
-
Thompson, J.R.1
Marcelino, L.A.2
Polz, M.F.3
-
118
-
-
0034971935
-
Characterization of a 4-methylbenzoate-degrading methanogenic consortium as determined by small-subunit rDNA sequence analysis
-
Wu J, Liu W, Tseng I, Cheng S (2001) Characterization of a 4-methylbenzoate-degrading methanogenic consortium as determined by small-subunit rDNA sequence analysis. J Biosci Bioeng 91(5):449-455
-
(2001)
J Biosci Bioeng
, vol.91
, Issue.5
, pp. 449-455
-
-
Wu, J.1
Liu, W.2
Tseng, I.3
Cheng, S.4
-
119
-
-
0025230558
-
DNA damage promotes jumping between templates during enzymatic amplification
-
Paabo S, Irwin DM, Wilson AC (1990) DNA damage promotes jumping between templates during enzymatic amplification. J Biol Chem 265(8):4718-4721
-
(1990)
J Biol Chem
, vol.265
, Issue.8
, pp. 4718-4721
-
-
Paabo, S.1
Irwin, D.M.2
Wilson, A.C.3
-
120
-
-
0024341521
-
Hybrid DNA artifact from PCR of closely related target sequences
-
Shuldiner AR, Nirula A, Roth J (1989) Hybrid DNA artifact from PCR of closely related target sequences. Nucleic Acids Res 17(11):4409
-
(1989)
Nucleic Acids Res
, vol.17
, Issue.11
, pp. 4409
-
-
Shuldiner, A.R.1
Nirula, A.2
Roth, J.3
-
121
-
-
0029059015
-
Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I
-
Odelberg SJ, Weiss RB, Hata A, White R (1995) Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I. Nucleic Acids Res 23(11):2049-2057
-
(1995)
Nucleic Acids Res
, vol.23
, Issue.11
, pp. 2049-2057
-
-
Odelberg, S.J.1
Weiss, R.B.2
Hata, A.3
White, R.4
-
122
-
-
0029991037
-
Formation of chimeric DNA primer extension products by template switching onto an annealed downstream oli-gonucleotide
-
Patel R, Lin M, Laney M, Kurn N, Rose S, Ullman EF (1996) Formation of chimeric DNA primer extension products by template switching onto an annealed downstream oli-gonucleotide. Proc Natl Acad Sci U S A 93(7):2969-2974
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, Issue.7
, pp. 2969-2974
-
-
Patel, R.1
Lin, M.2
Laney, M.3
Kurn, N.4
Rose, S.5
Ullman, E.F.6
-
123
-
-
0030844080
-
Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes
-
Wang GC, Wang Y (1997) Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes. Appl Environ Microbiol 63(12):4645-4650
-
(1997)
Appl Environ Microbiol
, vol.63
, Issue.12
, pp. 4645-4650
-
-
Wang, G.C.1
Wang, Y.2
-
124
-
-
79952351866
-
Digital MDA for enumeration of total nucleic acid contamination
-
Blainey PC, Quake SR (2011) Digital MDA for enumeration of total nucleic acid contamination. Nucleic Acids Res 39(4), e19. doi:10.1093/nar/gkq1074
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.4
-
-
Blainey, P.C.1
Quake, S.R.2
-
125
-
-
80054791084
-
Decontamination of MDA reagents for single cell whole genome amplification
-
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng JF (2011) Decontamination of MDA reagents for single cell whole genome amplification. PLoS One 6(10):e26161. doi:10.1371/journal.pone.0026161
-
(2011)
Plos One
, vol.6
, Issue.10
-
-
Woyke, T.1
Sczyrba, A.2
Lee, J.3
Rinke, C.4
Tighe, D.5
Clingenpeel, S.6
Malmstrom, R.7
Stepanauskas, R.8
Cheng, J.F.9
-
126
-
-
28444495886
-
Cell-free cloning using phi29 DNA polymerase
-
Hutchison CA 3rd, Smith HO, Pfannkoch C, Venter JC (2005) Cell-free cloning using phi29 DNA polymerase. Proc Natl Acad Sci U S A 102(48):17332-17336. doi:10.1073/pnas.0508809102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.48
, pp. 17332-17336
-
-
Hutchison, C.A.1
Smith, H.O.2
Pfannkoch, C.3
Venter, J.C.4
-
127
-
-
34848895943
-
Nanoliter reactors improve multiple displacement amplification of genomes from single cells
-
Marcy Y, Ishoey T, Lasken RS, Stockwell TB, Walenz BP, Halpern AL, Beeson KY, Goldberg SM, Quake SR (2007) Nanoliter reactors improve multiple displacement amplification of genomes from single cells. PLoS Genet 3(9):1702-1708. doi:10.1371/journal.pgen.0030155
-
(2007)
Plos Genet
, vol.3
, Issue.9
, pp. 1702-1708
-
-
Marcy, Y.1
Ishoey, T.2
Lasken, R.S.3
Stockwell, T.B.4
Walenz, B.P.5
Halpern, A.L.6
Beeson, K.Y.7
Goldberg, S.M.8
Quake, S.R.9
-
128
-
-
84864258558
-
Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm
-
Wang J, Fan HC, Behr B, Quake SR (2012) Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm. Cell 150(2):402-12. doi:10.1016/j.cell.2012.06.030
-
(2012)
Cell
, vol.150
, Issue.2
, pp. 402-412
-
-
Wang, J.1
Fan, H.C.2
Behr, B.3
Quake, S.R.4
-
129
-
-
0027984280
-
5-Nitroindole as an universal base analogue
-
Loakes D, Brown DM (1994) 5-Nitroindole as an universal base analogue. Nucleic Acids Res 22(20):4039-4043
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.20
, pp. 4039-4043
-
-
Loakes, D.1
Brown, D.M.2
-
130
-
-
0031577265
-
Stability and structure of DNA oligonucleotides containing non-specific base analogues
-
Loakes D, Hill F, Brown DM, Salisbury SA (1997) Stability and structure of DNA oligonucleotides containing non-specific base analogues. J Mol Biol 270(3):426-435. doi:10.1006/jmbi.1997.1129
-
(1997)
J Mol Biol
, vol.270
, Issue.3
, pp. 426-435
-
-
Loakes, D.1
Hill, F.2
Brown, D.M.3
Salisbury, S.A.4
-
131
-
-
33847153470
-
Whole genome amplification from single cells in preimplantation genetic diagnosis and prenatal diagnosis
-
Peng W, Takabayashi H, Ikawa K (2007) Whole genome amplification from single cells in preimplantation genetic diagnosis and prenatal diagnosis. Eur J Obstet Gynecol Reprod Biol 131(1):13-20. doi:10.1016/j.ejogrb.2006.07.027
-
(2007)
Eur J Obstet Gynecol Reprod Biol
, vol.131
, Issue.1
, pp. 13-20
-
-
Peng, W.1
Takabayashi, H.2
Ikawa, K.3
-
132
-
-
0027869724
-
Cytogenetic profiling using fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH)
-
Thompson CT, Gray JW (1993) Cytogenetic profiling using fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH). J Cell Biochem Suppl 17G:139-143
-
(1993)
J Cell Biochem Suppl
, vol.17
, pp. 139-143
-
-
Thompson, C.T.1
Gray, J.W.2
-
133
-
-
0028979699
-
Interphase cytogenetics reveals a high incidence of aneu-ploidy and intra-tumour heterogeneity in breast cancer
-
Fiegl M, Tueni C, Schenk T, Jakesz R, Gnant M, Reiner A, Rudas M, Pirc-Danoewinata H, Marosi C, Huber H et al (1995) Interphase cytogenetics reveals a high incidence of aneu-ploidy and intra-tumour heterogeneity in breast cancer. Br J Cancer 72(1):51-55
-
(1995)
Br J Cancer
, vol.72
, Issue.1
, pp. 51-55
-
-
Fiegl, M.1
Tueni, C.2
Schenk, T.3
Jakesz, R.4
Gnant, M.5
Reiner, A.6
Rudas, M.7
Pirc-Danoewinata, H.8
Marosi, C.9
Huber, H.10
-
134
-
-
0026495364
-
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors
-
Kallioniemi A, Kallioniemi O, Sudar D, Rutovitz D, Gray J, Waldman F, Pinkel D (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258(5083):818-821
-
(1992)
Science
, vol.258
, Issue.5083
, pp. 818-821
-
-
Kallioniemi, A.1
Kallioniemi, O.2
Sudar, D.3
Rutovitz, D.4
Gray, J.5
Waldman, F.6
Pinkel, D.7
-
135
-
-
1642543887
-
Single-nucleotide-polymorphism genotyp-ing for whole-genome-amplified samples using automated fluorescence correlation spectroscopy
-
Bannai M, Higuchi K, Akesaka T, Furukawa M, Yamaoka M, Sato K, Tokunaga K (2004) Single-nucleotide-polymorphism genotyp-ing for whole-genome-amplified samples using automated fluorescence correlation spectroscopy. Anal Biochem 327(2):215-221. doi:10.1016/j.ab.2004.01.012
-
(2004)
Anal Biochem
, vol.327
, Issue.2
, pp. 215-221
-
-
Bannai, M.1
Higuchi, K.2
Akesaka, T.3
Furukawa, M.4
Yamaoka, M.5
Sato, K.6
Tokunaga, K.7
-
136
-
-
0038781878
-
Unbiased whole-genome amplification directly from clinical samples
-
Hosono S, Faruqi A, Dean F, Du Y, Sun Z, Wu X, Du J, Kingsmore S, Egholm M, Lasken R (2003) Unbiased whole-genome amplification directly from clinical samples. Genome Res 13(5):954-964
-
(2003)
Genome Res
, vol.13
, Issue.5
, pp. 954-964
-
-
Hosono, S.1
Faruqi, A.2
Dean, F.3
Du, Y.4
Sun, Z.5
Wu, X.6
Du, J.7
Kingsmore, S.8
Egholm, M.9
Lasken, R.10
-
137
-
-
0642273268
-
Quantitative evaluation by minisequencing and microar-rays reveals accurate multiplexed SNP geno-typing of whole genome amplified DNA
-
Lovmar L, Fredriksson M, Liljedahl U, Sigurdsson S, Syvanen A (2003) Quantitative evaluation by minisequencing and microar-rays reveals accurate multiplexed SNP geno-typing of whole genome amplified DNA. Nucleic Acids Res 31:e129
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Lovmar, L.1
Fredriksson, M.2
Liljedahl, U.3
Sigurdsson, S.4
Syvanen, A.5
-
138
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Peramenschikov A, Williams CF, Jeffery SS, Botstein D, Brown PO (1999) Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet 23: 41-46
-
(1999)
Nat Genet
, vol.23
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Peramenschikov, A.5
Williams, C.F.6
Jeffery, S.S.7
Botstein, D.8
Brown, P.O.9
-
139
-
-
0034016185
-
Genome change sand gene expression in human solid tumors
-
Gray JW, Collins C (2000) Genome change sand gene expression in human solid tumors. Carcinogenesis 21(3):443-452
-
(2000)
Carcinogenesis
, vol.21
, Issue.3
, pp. 443-452
-
-
Gray, J.W.1
Collins, C.2
-
140
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057):376-380. doi:10.1038/nature03959
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro Kr Tomasz, A.47
Vogt, K.A.48
Volkmer, G.A.49
Wang, S.H.50
Wang, Y.51
Weiner, M.P.52
Yu, P.53
Begley, R.F.54
Rothberg, J.M.55
more..
-
141
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell hR Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, Zhang L, Alam MD, Anastasi C, Aniebo IC, Bailey DM, Bancarz IR, Banerjee S, Barbour SG, Baybayan PA, Benoit VA, Benson KF, Bevis C, Black PJ, Boodhun A, Brennan JS, Bridgham JA, Brown RC, Brown AA, Buermann DH, Bundu AA, Burrows JC, Carter NP, Castillo N, Chiara ECM, Chang S, Neil Cooley R, Crake NR, Dada OO, Diakoumakos KD, Dominguez-Fernandez B, Earnshaw DJ, Egbujor UC, Elmore DW, Etchin SS, Ewan MR, Fedurco M, Fraser LJ, Fuentes Fajardo KV, Scott Furey W, George D, Gietzen KJ, Goddard CP, Golda GS, Granieri PA, Green DE, Gustafson DL, Hansen NF, Harnish K, Haudenschild CD, Heyer NI, Hims MM, Ho JT, Horgan AM, Hoschler K, Hurwitz S, Ivanov DV, Johnson MQ, James T, Huw Jones TA, Kang GD, Kerelska TH, Kersey AD, Khrebtukova I, Kindwall AP, Kingsbury Z, Kokko-Gonzales PI, Kumar A, Laurent MA, Lawley CT, Lee SE, Lee X, Liao AK, Loch JA, Lok M, Luo S, Mammen RM, Martin JW, McCauley PG, McNitt P, Mehta P, Moon KW, Mullens JW, Newington T, Ning Z, Ling Ng B, Novo SM, O'Neill MJ, Osborne MA, Osnowski A, Ostadan O, Paraschos LL, Pickering L, Pike AC, Pike AC, Chris Pinkard D, Pliskin DP, Podhasky J, Quijano VJ, Raczy C, Rae VH, Rawlings SR, Chiva Rodriguez A, Roe PM, Rogers J, Rogert Bacigalupo MC, Romanov N, Romieu A, Roth RK, Rourke NJ, Ruediger ST, Rusman E, Sanches-Kuiper RM, Schenker MR, Seoane JM, Shaw RJ, Shiver MK, Short SW, Sizto NL, Sluis JP, Smith MA, Ernest Sohna Sohna J, Spence EJ, Stevens K, Sutton N, Szajkowski L, Tregidgo CL, Turcatti G, Vandevondele S, Verhovsky Y, Virk SM, Wakelin S, Walcott GC, Wang J, Worsley GJ, Yan J, Yau L, Zuerlein M, Rogers J, Mullikin JC, Hurles ME, McCooke NJ, West JS, Oaks FL, Lundberg PL, Klenerman D, Durbin R, Smith AJ (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456 (7218): 53-59. doi:10.1038/nature07517
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
Hall, K.P.7
Evers, D.J.8
Barnes, C.L.9
Bignell Hr Boutell, J.M.10
Bryant, J.11
Carter, R.J.12
Keira Cheetham, R.13
Cox, A.J.14
Ellis, D.J.15
Flatbush, M.R.16
Gormley, N.A.17
Humphray, S.J.18
Irving, L.J.19
Karbelashvili, M.S.20
Kirk, S.M.21
Li, H.22
Liu, X.23
Maisinger, K.S.24
Murray, L.J.25
Obradovic, B.26
Ost, T.27
Parkinson, M.L.28
Pratt, M.R.29
Rasolonjatovo, I.M.30
Reed, M.T.31
Rigatti, R.32
Rodighiero, C.33
Ross, M.T.34
Sabot, A.35
Sankar, S.V.36
Scally, A.37
Schroth, G.P.38
Smith, M.E.39
Smith, V.P.40
Spiridou, A.41
Torrance, P.E.42
Tzonev, S.S.43
Vermaas, E.H.44
Walter, K.45
Wu, X.46
Zhang, L.47
Alam, M.D.48
Anastasi, C.49
Aniebo, I.C.50
Bailey, D.M.51
Bancarz, I.R.52
Banerjee, S.53
Barbour, S.G.54
Baybayan, P.A.55
Benoit, V.A.56
Benson, K.F.57
Bevis, C.58
Black, P.J.59
Boodhun, A.60
Brennan, J.S.61
Bridgham, J.A.62
Brown, R.C.63
Brown, A.A.64
Buermann, D.H.65
Bundu, A.A.66
Burrows, J.C.67
Carter, N.P.68
Castillo, N.69
Chiara, E.70
Chang, S.71
Neil Cooley, R.72
Crake, N.R.73
Dada, O.O.74
Diakoumakos, K.D.75
Dominguez-Fernandez, B.76
Earnshaw, D.J.77
Egbujor, U.C.78
Elmore, D.W.79
Etchin, S.S.80
Ewan, M.R.81
Fedurco, M.82
Fraser, L.J.83
Fuentes Fajardo, K.V.84
Scott Furey, W.85
George, D.86
Gietzen, K.J.87
Goddard, C.P.88
Golda, G.S.89
Granieri, P.A.90
Green, D.E.91
Gustafson, D.L.92
Hansen, N.F.93
Harnish, K.94
Haudenschild, C.D.95
Heyer, N.I.96
Hims, M.M.97
Ho, J.T.98
Horgan, A.M.99
Hoschler, K.100
Hurwitz, S.101
Ivanov, D.V.102
Johnson, M.Q.103
James, T.104
Huw Jones, T.A.105
Kang, G.D.106
Kerelska, T.H.107
Kersey, A.D.108
Khrebtukova, I.109
Kindwall, A.P.110
Kingsbury, Z.111
Kokko-Gonzales, P.I.112
Kumar, A.113
Laurent, M.A.114
Lawley, C.T.115
Lee, S.E.116
Lee, X.117
Liao, A.K.118
Loch, J.A.119
Lok, M.120
Luo, S.121
Mammen, R.M.122
Martin, J.W.123
McCauley, P.G.124
McNitt, P.125
Mehta, P.126
Moon, K.W.127
Mullens, J.W.128
Newington, T.129
Ning, Z.130
Ling Ng, B.131
Novo, S.M.132
O'neill, M.J.133
Osborne, M.A.134
Osnowski, A.135
Ostadan, O.136
Paraschos, L.L.137
Pickering, L.138
Pike, A.C.139
Pike, A.C.140
Chris Pinkard, D.141
Pliskin, D.P.142
Podhasky, J.143
Quijano, V.J.144
Raczy, C.145
Rae, V.H.146
Rawlings, S.R.147
Chiva Rodriguez, A.148
Roe, P.M.149
Rogers, J.150
Rogert Bacigalupo, M.C.151
Romanov, N.152
Romieu, A.153
Roth, R.K.154
Rourke, N.J.155
Ruediger, S.T.156
Rusman, E.157
Sanches-Kuiper, R.M.158
Schenker, M.R.159
Seoane, J.M.160
Shaw, R.J.161
Shiver, M.K.162
Short, S.W.163
Sizto, N.L.164
Sluis, J.P.165
Smith, M.A.166
Ernest Sohna Sohna, J.167
Spence, E.J.168
Stevens, K.169
Sutton, N.170
Szajkowski, L.171
Tregidgo, C.L.172
Turcatti, G.173
Vandevondele, S.174
Verhovsky, Y.175
Virk, S.M.176
Wakelin, S.177
Walcott, G.C.178
Wang, J.179
Worsley, G.J.180
Yan, J.181
Yau, L.182
Zuerlein, M.183
Rogers, J.184
Mullikin, J.C.185
Hurles, M.E.186
McCooke, N.J.187
West, J.S.188
Oaks, F.L.189
Lundberg, P.L.190
Klenerman, D.191
Durbin, R.192
Smith, A.J.193
more..
-
142
-
-
46449103738
-
Johnson SMnucleosome position map of C. Elegans reveals a lack of universal sequence-dictated positioning
-
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SMnucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res 18(7):1051-1063. doi: 10.1101/gr.076463.108
-
Genome Res
, vol.18
, Issue.7
, pp. 1051-1063
-
-
Valouev, A.1
Ichikawa, J.2
Tonthat, T.3
Stuart, J.4
Ranade, S.5
Peckham, H.6
Zeng, K.7
Malek, J.A.8
Costa, G.9
McKernan, K.10
Sidow, A.11
Fire, A.12
-
143
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high- density in vitro transposition
-
Adey A, Morrison HG, Asan XX, Kitzman JO, Turner EH, Stackhouse B, MacKenzie AP, Caruccio NC, Zhang X, Shendure J (2010) Rapid, low-input, low-bias construction of shotgun fragment libraries by high- density in vitro transposition. Genome Biol 11(12): R119. doi: 10.1186/gb-2010-11-12-r119
-
(2010)
Genome Biol
, vol.11
, Issue.12
, pp. R119
-
-
Adey, A.1
Morrison, H.G.2
Asan, X.X.3
Kitzman, J.O.4
Turner, E.H.5
Stackhouse, B.6
Mackenzie, A.P.7
Caruccio, N.C.8
Zhang, X.9
Shendure, J.10
-
144
-
-
84865591846
-
A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacifi c Biosciences and Illumina MiSeq sequencers
-
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacifi c Biosciences and Illumina MiSeq sequencers. BMC Genomics 13:341. doi: 10.1186/1471-2164-13-341
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
Otto, T.D.4
Harris, S.R.5
Connor, T.R.6
Bertoni, A.7
Swerdlow, H.P.8
Gu, Y.9
-
145
-
-
84866489432
-
Accurate variant detection across nonamplifi ed and whole genome amplifi ed DNA using targeted next generation sequencing
-
ElSharawy A, Warner J, Olson J, Forster M, Schilhabel MB, Link DR, Rose-John S, Schreiber S, Rosenstiel P, Brayer J, Franke A (2012) Accurate variant detection across nonamplifi ed and whole genome amplifi ed DNA using targeted next generation sequencing. BMC Genomics 13:500. doi: 10.1186/1471-2164-13-500
-
(2012)
BMC Genomics
, vol.13
, pp. 500
-
-
Elsharawy, A.1
Warner, J.2
Olson, J.3
Forster, M.4
Schilhabel, M.B.5
Link, D.R.6
Rose-John, S.7
Schreiber, S.8
Rosenstiel, P.9
Brayer, J.10
Franke, A.11
-
146
-
-
84880024289
-
Variant discovery in targeted resequencing using whole genome amplifi ed DNA
-
Indap AR, Cole R, Runge CL, Marth GT, Olivier M (2013) Variant discovery in targeted resequencing using whole genome amplifi ed DNA. BMC Genomics 14:468. doi: 10.1186/1471-2164-14-468
-
(2013)
BMC Genomics
, vol.14
, pp. 468
-
-
Indap, A.R.1
Cole, R.2
Runge, C.L.3
Marth, G.T.4
Olivier, M.5
-
147
-
-
77955778246
-
Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fi xed paraffi nembedded specimens
-
Wood HM, Belvedere O, Conway C, Daly C, Chalkley R, Bickerdike M, McKinley C, Egan P, Ross L, Hayward B, Morgan J, Davidson L, MacLennan K, Ong TK, Papagiannopoulos K, Cook I, Adams DJ, Taylor GR, Rabbitts P (2010) Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fi xed paraffi nembedded specimens. Nucleic Acids Res 38(14):e151. doi: 10.1093/nar/gkq510
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.14
, pp. 151
-
-
Wood, H.M.1
Belvedere, O.2
Conway, C.3
Daly, C.4
Chalkley, R.5
Bickerdike, M.6
McKinley, C.7
Egan, P.8
Ross, L.9
Hayward, B.10
Morgan, J.11
Davidson, L.12
Maclennan, K.13
Ong, T.K.14
Papagiannopoulos, K.15
Cook, I.16
Adams, D.J.17
Taylor, G.R.18
Rabbitts, P.19
-
148
-
-
84867693359
-
Mate pair sequencing of whole-genome- amplifi ed DNA following laser capture microdissection of prostate cancer
-
Murphy SJ, Cheville JC, Zarei S, Johnson SH, Sikkink RA, Kosari F, Feldman AL, Eckloff BW, Karnes RJ, Vasmatzis G (2012) Mate pair sequencing of whole-genome- amplifi ed DNA following laser capture microdissection of prostate cancer. DNA Res 19(5):395-406. doi: 10.1093/dnares/dss021
-
(2012)
DNA Res
, vol.19
, Issue.5
, pp. 395-406
-
-
Murphy, S.J.1
Cheville, J.C.2
Zarei, S.3
Johnson, S.H.4
Sikkink, R.A.5
Kosari, F.6
Feldman, A.L.7
Eckloff, B.W.8
Karnes, R.J.9
Vasmatzis, G.10
-
149
-
-
84880213158
-
Singlecell paired-end genome sequencing reveals structural variation per cell cycle
-
Voet T, Kumar P, Van Loo P, Cooke SL, Marshall J, Lin ML, Zamani Esteki M, Van der Aa N, Mateiu L, McBride DJ, Bignell GR, McLaren S, Teague J, Butler A, Raine K, Stebbings LA, Quail MA, D’Hooghe T, Moreau Y, Futreal PA, Stratton MR, Vermeesch JR, Campbell PJ (2013) Singlecell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Res 41(12):6119-6138. doi: 10.1093/nar/gkt345
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.12
, pp. 6119-6138
-
-
Voet, T.1
Kumar, P.2
Van Loo, P.3
Cooke, S.L.4
Marshall, J.5
Lin, M.L.6
Zamani Esteki, M.7
Van Der Aa, N.8
Mateiu, L.9
McBride, D.J.10
Bignell, G.R.11
McLaren, S.12
Teague, J.13
Butler, A.14
Raine, K.15
Stebbings, L.A.16
Quail, M.A.17
D’Hooghe, T.18
Moreau, Y.19
Futreal, P.A.20
Stratton, M.R.21
Vermeesch, J.R.22
Campbell, P.J.23
more..
-
150
-
-
63949083912
-
Amplifi cationfree Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
-
Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ (2009) Amplifi cationfree Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods 6(4):291-295. doi: 10.1038/nmeth.1311
-
(2009)
Nat Methods
, vol.6
, Issue.4
, pp. 291-295
-
-
Kozarewa, I.1
Ning, Z.2
Quail, M.A.3
Sanders, M.J.4
Berriman, M.5
Turner, D.J.6
-
151
-
-
77449147610
-
FRT-seq: Amplifi cation-free, strand-specifi c transcriptome sequencing
-
Mamanova L, Andrews RM, James KD, Sheridan EM, Ellis PD, Langford CF, Ost TW, Collins JE, Turner DJ (2010) FRT-seq: amplifi cation-free, strand-specifi c transcriptome sequencing. Nat Methods 7(2):130-132. doi: 10.1038/nmeth.1417
-
(2010)
Nat Methods
, vol.7
, Issue.2
, pp. 130-132
-
-
Mamanova, L.1
Rews, R.M.2
James, K.D.3
Sheridan, E.M.4
Ellis, P.D.5
Langford, C.F.6
Ost, T.W.7
Collins, J.E.8
Turner, D.J.9
-
152
-
-
57049122389
-
A large genome center's improvements to the Illumina sequencing system
-
Quail MA, Kozarewa I, Smith F, Scally A, Stephens PJ, Durbin R, Swerdlow H, Turner DJ (2008) A large genome center's improvements to the Illumina sequencing system. Nat Methods 5(12):1005-1010. doi: 10.1038/nmeth.1270
-
(2008)
Nat Methods
, vol.5
, Issue.12
, pp. 1005-1010
-
-
Quail, M.A.1
Kozarewa, I.2
Smith, F.3
Scally, A.4
Stephens, P.J.5
Durbin, R.6
Swerdlow, H.7
Turner, D.J.8
-
153
-
-
78751682536
-
Overcoming bias and systematic errors in next generation sequencing data
-
Taub MA, Corrada Bravo H, Irizarry RA (2010) Overcoming bias and systematic errors in next generation sequencing data. Genome Med 2(12):87. doi: 10.1186/gm208
-
(2010)
Genome Med
, vol.2
, Issue.12
, pp. 87
-
-
Taub, M.A.1
Corrada Bravo, H.2
Irizarry, R.A.3
-
154
-
-
84876936831
-
Effects of GC bias in nextgeneration-sequencing data on de novo genome assembly
-
Chen YC, Liu T, Yu CH, Chiang TY, Hwang CC (2013) Effects of GC bias in nextgeneration-sequencing data on de novo genome assembly. PLoS One 8(4):e62856. doi: 10.1371/journal.pone.0062856
-
(2013)
Plos One
, vol.8
, Issue.4
-
-
Chen, Y.C.1
Liu, T.2
Yu, C.H.3
Chiang, T.Y.4
Hwang, C.C.5
-
155
-
-
79551632681
-
Detection and removal of biases in the analysis of nextgeneration sequencing reads
-
Schwartz S, Oren R, Ast G (2011) Detection and removal of biases in the analysis of nextgeneration sequencing reads. PLoS One 6(1):e16685. doi: 10.1371/journal.pone.0016685
-
(2011)
Plos One
, vol.6
, Issue.1
-
-
Schwartz, S.1
Oren, R.2
Ast, G.3
-
156
-
-
79960403323
-
Mathematical modeling of 16S ribosomal DNA amplifi cation reveals optimal conditions for the interr ogationof complex microbial communities with phylogenetic microarrays
-
Paliy O, Foy BD (2011) Mathematical modeling of 16S ribosomal DNA amplifi cation reveals optimal conditions for the interr ogationof complex microbial communities with phylogenetic microarrays. Bioinformatics 27(15):2134-2140. doi: 10.1093/bioinformatics/btr326
-
(2011)
Bioinformatics
, vol.27
, Issue.15
, pp. 2134-2140
-
-
Paliy, O.1
Foy, B.D.2
|