메뉴 건너뛰기




Volumn 63, Issue 12, 1997, Pages 4645-4650

Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOBACTERIA; ARTICLE; CHIMERA; DNA SEQUENCE; GENE AMPLIFICATION; GENE EXPRESSION; GENOME; POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA SEQUENCE; SPECIES DIFFERENTIATION;

EID: 0030844080     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.12.4645-4650.1997     Document Type: Article
Times cited : (244)

References (30)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R., W. Ludwig, and K. H. Scheifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.1    Ludwig, W.2    Scheifer, K.H.3
  • 2
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91:1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 3
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 4
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., T. J. Dull, D. D. Sleeter, and H. F. Noller. 1981. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148:107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 6
    • 0026808684 scopus 로고
    • Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction
    • Bruce, K. D., W. D. Hiorns, J. L. Hobman, A. M. Osborn, P. Strike, and D. A. Ritchie. 1992. Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Appl. Environ. Microbiol. 58:3413-3416.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3413-3416
    • Bruce, K.D.1    Hiorns, W.D.2    Hobman, J.L.3    Osborn, A.M.4    Strike, P.5    Ritchie, D.A.6
  • 7
    • 0026616309 scopus 로고
    • Biodiversity as a source of innovation in biotechnology
    • Bull, A. T., M. Goodfellow, and J. H. Slater. 1992. Biodiversity as a source of innovation in biotechnology. Annu. Rev. Microbiol. 46:219-251.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 219-251
    • Bull, A.T.1    Goodfellow, M.2    Slater, J.H.3
  • 8
    • 0031149569 scopus 로고    scopus 로고
    • Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone library
    • Chandler, D. P., J. K. Fredrickson, and F. J. Brockman. 1997. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone library. Mol. Ecol. 6:475-482.
    • (1997) Mol. Ecol. , vol.6 , pp. 475-482
    • Chandler, D.P.1    Fredrickson, J.K.2    Brockman, F.J.3
  • 9
    • 0028354883 scopus 로고
    • Diversity of cultivable and uncultivable oral Spirochetes from a patient with severe destructive periodontitis
    • Choi, B. K., B. J. Paster, F. E. Dewhirst, and U. B. Gobel. 1994. Diversity of cultivable and uncultivable oral Spirochetes from a patient with severe destructive periodontitis. Infect. Immun. 62:1889-1895.
    • (1994) Infect. Immun. , vol.62 , pp. 1889-1895
    • Choi, B.K.1    Paster, B.J.2    Dewhirst, F.E.3    Gobel, U.B.4
  • 10
    • 0029027263 scopus 로고
    • Intraspecific variation in small-subunit rRNA sequences in GenBank: Why single sequences may not adequately represent prokaryotic taxa
    • Clayton, R. A., G. Sutton, P. S. Hinkle, Jr., C. Bult, and C. Fields. 1995. Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int. J. Syst. Bacteriol. 45:595-599.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 595-599
    • Clayton, R.A.1    Sutton, G.2    Hinkle P.S., Jr.3    Bult, C.4    Fields, C.5
  • 11
    • 0027219282 scopus 로고
    • General method for amplifying regions of very high G + C content
    • Dutton, C. M., C. Paynton, and S. Sommer. 1993. General method for amplifying regions of very high G + C content. Nucleic Acids Res. 21:2953-2954.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 2953-2954
    • Dutton, C.M.1    Paynton, C.2    Sommer, S.3
  • 14
    • 0027520142 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA gene cluster from Streptomyces griseus subsp. griseus
    • Kim, E., H. Kim, S.-P. Hong, K. H. Kang, Y. H. Kho, and Y.-H. Park. 1993. Gene organization and primary structure of a ribosomal RNA gene cluster from Streptomyces griseus subsp. griseus. Gene 132:21-31.
    • (1993) Gene , vol.132 , pp. 21-31
    • Kim, E.1    Kim, H.2    Hong, S.-P.3    Kang, K.H.4    Kho, Y.H.5    Park, Y.-H.6
  • 15
    • 0030921309 scopus 로고    scopus 로고
    • A new computational method for detection of chimeric 16S rRNA artifacts generated by PCR amplification from mixed bacterial populations
    • Komatsoulis, G. A., and M. S. Waterman. 1997. A new computational method for detection of chimeric 16S rRNA artifacts generated by PCR amplification from mixed bacterial populations. Appl. Environ. Microbiol. 63:2338-2346.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2338-2346
    • Komatsoulis, G.A.1    Waterman, M.S.2
  • 16
    • 0028082207 scopus 로고
    • Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
    • Kopczynski, E. D., M. M. Bateson, and D. M. Ward. 1994. Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ. Microbiol. 60:746-748.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 746-748
    • Kopczynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 18
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
    • Liesack, W., H. Weyland, and E. Stackebrandt. 1991. Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microb. Ecol. 21:191-198.
    • (1991) Microb. Ecol. , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 20
    • 0027996969 scopus 로고
    • The impact of PCR plateau on the quantitative PCR
    • Morrison, C., and F. Gannon. 1994. The impact of PCR plateau on the quantitative PCR. Biochim. Biophys. Acta 1219:493-498.
    • (1994) Biochim. Biophys. Acta , vol.1219 , pp. 493-498
    • Morrison, C.1    Gannon, F.2
  • 21
    • 0025230558 scopus 로고
    • DNA damage promotes jumping between templates during enzymatic amplification
    • Paabo, S., D. M. Irwin, and A. C. Wilson. 1992. DNA damage promotes jumping between templates during enzymatic amplification. J. Biol. Chem. 265:4718-4721.
    • (1992) J. Biol. Chem. , vol.265 , pp. 4718-4721
    • Paabo, S.1    Irwin, D.M.2    Wilson, A.C.3
  • 23
    • 0028915470 scopus 로고
    • Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences
    • Robison-Cox, J. F., M. M. Bateson, and D. M. Ward. 1995. Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences. Appl. Environ. Microbiol. 61:1240-1245.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1240-1245
    • Robison-Cox, J.F.1    Bateson, M.M.2    Ward, D.M.3
  • 25
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 26
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
    • Wang, G. C.-Y., and Y. Wang. 1996. The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species. Microbiology 142:1107-1117.
    • (1996) Microbiology , vol.142 , pp. 1107-1117
    • Wang, G.C.-Y.1    Wang, Y.2
  • 27
    • 0029799201 scopus 로고    scopus 로고
    • A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus Thermobispora gen. nov., as Thermobispora bispora comb. nov
    • Wang, Y., Z. S. Zhang, and J. S. Ruan. 1996. A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus Thermobispora gen. nov., as Thermobispora bispora comb. nov. Int. J. Syst. Bacteriol. 46:933-938.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 933-938
    • Wang, Y.1    Zhang, Z.S.2    Ruan, J.S.3
  • 28
    • 0030977047 scopus 로고    scopus 로고
    • The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
    • Wang, Y., Z. S. Zhang, and R. Narendrakumar. 1997. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J. Bacteriol. 179:3270-3276.
    • (1997) J. Bacteriol. , vol.179 , pp. 3270-3276
    • Wang, Y.1    Zhang, Z.S.2    Narendrakumar, R.3
  • 29
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature (London) 345:63-65.
    • (1990) Nature (London) , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 30
    • 0025731189 scopus 로고
    • 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
    • Weller, R., J. W. Weller, and D. M. Ward. 1991. 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl. Environ. Microbiol. 57:1146-1151.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1146-1151
    • Weller, R.1    Weller, J.W.2    Ward, D.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.