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Volumn 157, Issue 5, 2015, Pages 311-320

Mutation analysis and molecular modeling for the investigation of ligand-binding modes of GPR84

Author keywords

diindolylmethane; free fatty acid receptor; G protein coupled receptor; G protein coupled receptor G fusion proteins; positive allosteric modulator

Indexed keywords

3,3' DIINDOLYLMETHANE; BETA 2 ADRENERGIC RECEPTOR; DECANOIC ACID; DECYLAMINE; G PROTEIN COUPLED RECEPTOR; G PROTEIN COUPLED RECEPTOR 84; GUANOSINE 5' O (3 THIOTRIPHOSPHATE); MEMBRANE PROTEIN; TRANSMEMBRANE HELIX III; TRANSMEMBRANE HELIX IV; TRANSMEMBRANE HELIX V; UNCLASSIFIED DRUG; CELL SURFACE RECEPTOR; GPR84 PROTEIN, HUMAN; LIGAND; PROTEIN BINDING;

EID: 84941115304     PISSN: 0021924X     EISSN: 17562651     Source Type: Journal    
DOI: 10.1093/jb/mvu075     Document Type: Article
Times cited : (31)

References (41)
  • 1
    • 69549111756 scopus 로고    scopus 로고
    • Molecular pharmacology of promiscuous seven transmembrane receptors sensing organic nutrients
    • Wellendorph, P., Johansen, L.D., and Brauner-Osborne, H. (2009) Molecular pharmacology of promiscuous seven transmembrane receptors sensing organic nutrients. Mol. Pharmacol. 76, 453-465
    • (2009) Mol. Pharmacol. , vol.76 , pp. 453-465
    • Wellendorph, P.1    Johansen, L.D.2    Brauner-Osborne, H.3
  • 2
    • 84864541097 scopus 로고    scopus 로고
    • G protein-coupled receptors for energy metabolites as new therapeutic targets
    • Blad, C.C., Tang, C., and Offermanns, S. (2012) G protein-coupled receptors for energy metabolites as new therapeutic targets. Nat. Drug Discov. 11, 603-619
    • (2012) Nat. Drug Discov. , vol.11 , pp. 603-619
    • Blad, C.C.1    Tang, C.2    Offermanns, S.3
  • 6
    • 83055184091 scopus 로고    scopus 로고
    • 5-Hydroxy-eicosapentaenoic acid is an endogenous GPR119 agonist and enhances glucose-dependent insulin secretion
    • Kogure, R., Toyama, K., Hiyamuta, S., Kojima, I., and Takeda, S. (2011) 5-Hydroxy-eicosapentaenoic acid is an endogenous GPR119 agonist and enhances glucose-dependent insulin secretion. Biochem. Biophys. Res. Commun. 416, 58-63
    • (2011) Biochem. Biophys. Res. Commun. , vol.416 , pp. 58-63
    • Kogure, R.1    Toyama, K.2    Hiyamuta, S.3    Kojima, I.4    Takeda, S.5
  • 10
    • 0037024360 scopus 로고    scopus 로고
    • Identification of G protein-coupled receptor genes from the human genome sequence
    • Takeda, S., Kadowaki, S., Haga, T., Takaesu, H., and Mitaku, S. (2002) Identification of G protein-coupled receptor genes from the human genome sequence. FEBS Lett. 520, 97-101
    • (2002) FEBS Lett. , vol.520 , pp. 97-101
    • Takeda, S.1    Kadowaki, S.2    Haga, T.3    Takaesu, H.4    Mitaku, S.5
  • 11
    • 0035970294 scopus 로고    scopus 로고
    • An expressed sequence tag (EST) data mining strategy succeeding in the discovery of new G-protein coupled receptors
    • Wittenberger, T., Schaller, H.C., and Hellebrand, S. (2001) An expressed sequence tag (EST) data mining strategy succeeding in the discovery of new G-protein coupled receptors. J. Mol. Biol. 307, 799-813
    • (2001) J. Mol. Biol. , vol.307 , pp. 799-813
    • Wittenberger, T.1    Schaller, H.C.2    Hellebrand, S.3
  • 12
    • 33845954973 scopus 로고    scopus 로고
    • Medium-chain fatty acids as ligands for orphan G protein-coupled receptor GPR84
    • Wang, J., Wu, X., Simonavicius, N., Tian, H., and Ling, L. (2006) Medium-chain fatty acids as ligands for orphan G protein-coupled receptor GPR84. J. Biol. Chem. 281, 34457-34464
    • (2006) J. Biol. Chem. , vol.281 , pp. 34457-34464
    • Wang, J.1    Wu, X.2    Simonavicius, N.3    Tian, H.4    Ling, L.5
  • 15
    • 0026591316 scopus 로고
    • Oligomerization of indole-3-carbinol in aqueous acid
    • Grose, K.R. and Bjeldanes, L.F. (1992) Oligomerization of indole-3-carbinol in aqueous acid. Chem. Res. Toxicol. 5, 188-193
    • (1992) Chem. Res. Toxicol. , vol.5 , pp. 188-193
    • Grose, K.R.1    Bjeldanes, L.F.2
  • 16
    • 41849109535 scopus 로고    scopus 로고
    • 3,30-Diindolylmethane stimulates murine immune function in vitro and in vivo
    • Xue, L., Pestka, J.J., Li, M., Firestone, G.L., and Bjeldanes, L.F. (2008) 3,30-Diindolylmethane stimulates murine immune function in vitro and in vivo. J. Biol. Chem. 19, 336-344
    • (2008) J. Biol. Chem. , vol.19 , pp. 336-344
    • Xue, L.1    Pestka, J.J.2    Li, M.3    Firestone, G.L.4    Bjeldanes, L.F.5
  • 17
    • 84858120018 scopus 로고    scopus 로고
    • Ice breaking in GPCR structural biology
    • Zhao, Q. and Wu, B.L. (2012) Ice breaking in GPCR structural biology. Acta Pharm. Sinica 33, 324-334
    • (2012) Acta Pharm. Sinica , vol.33 , pp. 324-334
    • Zhao, Q.1    Wu, B.L.2
  • 18
    • 77957055780 scopus 로고
    • Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations
    • Academic Press, San Diego, CA
    • Ballesteros, J.A. and Weinstein, H. (1995) Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein-coupled receptors in Methods in Neurosciences (Stuart, C.S., ed.) pp. 366-428, Academic Press, San Diego, CA
    • (1995) G Protein-coupled Receptors in Methods in Neurosciences (Stuart, C,S., Ed.) , pp. 366-428
    • Ballesteros, J.A.1    Weinstein, H.2
  • 19
    • 84857912455 scopus 로고    scopus 로고
    • Molecular modeling study of cyclic pentapeptide CXCR4 antagonists: New insight into CXCR4-FC131 interactions
    • Yoshikawa, Y., Kobayashi, K., Oishi, S., Fujii, N., and Furuya, T. (2012) Molecular modeling study of cyclic pentapeptide CXCR4 antagonists: new insight into CXCR4-FC131 interactions. Bioorg. Med. Chem. Lett. 22, 2146-2150
    • (2012) Bioorg. Med. Chem. Lett. , vol.22 , pp. 2146-2150
    • Yoshikawa, Y.1    Kobayashi, K.2    Oishi, S.3    Fujii, N.4    Furuya, T.5
  • 20
    • 84879043531 scopus 로고    scopus 로고
    • Optimized method of G-protein-coupled receptor homology modeling: Its application to the discovery of novel CXCR7 ligands
    • Yoshikawa, Y., Oishi, S., Kubo, T., Tanahara, N., Fujii, N., and Furuya, T. (2013) Optimized method of G-protein-coupled receptor homology modeling: its application to the discovery of novel CXCR7 ligands. J. Med. Chem. 56, 4236-4251
    • (2013) J. Med. Chem. , vol.56 , pp. 4236-4251
    • Yoshikawa, Y.1    Oishi, S.2    Kubo, T.3    Tanahara, N.4    Fujii, N.5    Furuya, T.6
  • 21
    • 3042711567 scopus 로고    scopus 로고
    • The receptor-Galpha fusion protein as a tool for ligand screening: A model study using a nociceptin receptor-Gai2 fusion protein
    • Takeda, S., Okada, T., Okamura, M., Haga, T., Isoyama-Tanaka, J., Kuwahara, H., and Minamino, N. (2004) The receptor-Galpha fusion protein as a tool for ligand screening: a model study using a nociceptin receptor-Gai2 fusion protein. J. Biochem. (Tokyo) 135, 597-604
    • (2004) J. Biochem. (Tokyo) , vol.135 , pp. 597-604
    • Takeda, S.1    Okada, T.2    Okamura, M.3    Haga, T.4    Isoyama-Tanaka, J.5    Kuwahara, H.6    Minamino, N.7
  • 23
    • 57749112018 scopus 로고    scopus 로고
    • Conserved polar residues in transmembrane domains V, VI, and VII of free fatty acid receptor 2 and free fatty acid receptor 3 are required for the binding and function of short chain fatty acids
    • Stoddart, L.A., Smith, N.J., Jenkins, L., Brown, A.J., and Milligan, G. (2008) Conserved polar residues in transmembrane domains V, VI, and VII of free fatty acid receptor 2 and free fatty acid receptor 3 are required for the binding and function of short chain fatty acids. J. Biol. Chem. 283, 32913-32924
    • (2008) J. Biol. Chem. , vol.283 , pp. 32913-32924
    • Stoddart, L.A.1    Smith, N.J.2    Jenkins, L.3    Brown, A.J.4    Milligan, G.5
  • 25
    • 79953216793 scopus 로고    scopus 로고
    • Selective orthosteric free fatty acid receptor 2 (FFA2) agonists: Identification of the structural and chemical requirements for selective activation of FFA2 versus FFA3
    • Schmidt, J., Smith, N.J., Christiansen, E., Tikhonova, I.G., Grundmann, M., Hudson, B.D., Ward, R.J., Drewke, C., Milligan, G., Kostenis, E., and Ulven, T. (2011) Selective orthosteric free fatty acid receptor 2 (FFA2) agonists: identification of the structural and chemical requirements for selective activation of FFA2 versus FFA3. J. Biol. Chem. 286, 10628-10640
    • (2011) J. Biol. Chem. , vol.286 , pp. 10628-10640
    • Schmidt, J.1    Smith, N.J.2    Christiansen, E.3    Tikhonova, I.G.4    Grundmann, M.5    Hudson, B.D.6    Ward, R.J.7    Drewke, C.8    Milligan, G.9    Kostenis, E.10    Ulven, T.11
  • 26
    • 27544491916 scopus 로고    scopus 로고
    • Characterization of determinants of ligand binding to the nicotinic acid receptor GPR109A (HM74A/PUMA-G)
    • Tunaru, S., Lattig, J., Kero, J., Krause, G., and Offermanns, S. (2005) Characterization of determinants of ligand binding to the nicotinic acid receptor GPR109A (HM74A/PUMA-G). Mol. Pharmacol. 68, 1271-1280
    • (2005) Mol. Pharmacol. , vol.68 , pp. 1271-1280
    • Tunaru, S.1    Lattig, J.2    Kero, J.3    Krause, G.4    Offermanns, S.5
  • 28
    • 0037423211 scopus 로고    scopus 로고
    • The unique ligand-binding pocket for the human prostacyclin receptor,site-directed mutagenesis and molecular modeling
    • Stitham, J., Stojanovic, A., Merenick, B.L., O'Hara, K.A., and Hwa, J. (2003) The unique ligand-binding pocket for the human prostacyclin receptor. Site-directed mutagenesis and molecular modeling. J. Biol. Chem. 278, 4250-4257
    • (2003) J. Biol. Chem. , vol.278 , pp. 4250-4257
    • Stitham, J.1    Stojanovic, A.2    Merenick, B.L.3    O'Hara, K.A.4    Hwa, J.5
  • 29
    • 33646478846 scopus 로고    scopus 로고
    • Residues from transmembrane helices 3 and 5 participate in leukotriene B4 binding to BLT1
    • Sabirsh, A., Bywater, R.P., Bristulf, J., Owman, C., and Haeggstrom, J.Z. (2006) Residues from transmembrane helices 3 and 5 participate in leukotriene B4 binding to BLT1. Biochemistry 45, 5733-5744
    • (2006) Biochemistry , vol.45 , pp. 5733-5744
    • Sabirsh, A.1    Bywater, R.P.2    Bristulf, J.3    Owman, C.4    Haeggstrom, J.Z.5
  • 30
    • 84874395887 scopus 로고    scopus 로고
    • Short-chain free fatty acid receptors FFA2/GPR43 and FFA3/GPR41 as new potential therapeutic targets
    • Ulven, T. (2012) Short-chain free fatty acid receptors FFA2/GPR43 and FFA3/GPR41 as new potential therapeutic targets. Front. Endocrinol. 3, 111
    • (2012) Front. Endocrinol. , vol.3 , pp. 111
    • Ulven, T.1
  • 31
    • 31344456486 scopus 로고    scopus 로고
    • Recombinant human PPAR-beta/ delta ligand-binding domain is locked in an activated conformation by endogenous fatty acids
    • Fyffe, S.A., Alphey, M.S., Buetow, L., Smith, T.K., Ferguson, M.A., Sorensen, M.D., Bjorkling, F., and Hunter, W.N. (2006) Recombinant human PPAR-beta/ delta ligand-binding domain is locked in an activated conformation by endogenous fatty acids. J. Mol. Biol. 356, 1005-1013
    • (2006) J. Mol. Biol. , vol.356 , pp. 1005-1013
    • Fyffe, S.A.1    Alphey, M.S.2    Buetow, L.3    Smith, T.K.4    Ferguson, M.A.5    Sorensen, M.D.6    Bjorkling, F.7    Hunter, W.N.8
  • 32
    • 0035502971 scopus 로고    scopus 로고
    • X-ray structure of the orphan nuclear receptor RORbeta ligand-binding domain in the active conformation
    • Stehlin, C., Wurtz, J.M., Steinmetz, A., Greiner, E., Schule, R., Moras, D., and Renaud, J.P. (2001) X-ray structure of the orphan nuclear receptor RORbeta ligand-binding domain in the active conformation. EMBO J. 20, 5822-5831
    • (2001) EMBO J. , vol.20 , pp. 5822-5831
    • Stehlin, C.1    Wurtz, J.M.2    Steinmetz, A.3    Greiner, E.4    Schule, R.5    Moras, D.6    Renaud, J.P.7
  • 33
    • 0031700043 scopus 로고    scopus 로고
    • Solution structure of barley lipid transfer protein complexed with palmitate,two different binding modes of palmitate in the homologous maize and barley nonspecific lipid transfer proteins
    • Lerche,M.H. and Poulsen, F.M. (1998) Solution structure of barley lipid transfer protein complexed with palmitate. Two different binding modes of palmitate in the homologous maize and barley nonspecific lipid transfer proteins. Protein Sci. 7, 2490-2498
    • (1998) Protein Sci. , vol.7 , pp. 2490-2498
    • Lerche, M.H.1    Poulsen, F.M.2
  • 36
    • 0029643949 scopus 로고
    • High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings
    • Shin, D.H., Lee, J.Y., Hwang, K.Y., Kim, K.K., and Suh, S.W. (1995) High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings. Structure. 3, 189-199
    • (1995) Structure , vol.3 , pp. 189-199
    • Shin, D.H.1    Lee, J.Y.2    Hwang, K.Y.3    Kim, K.K.4    Suh, S.W.5
  • 38
    • 33847108842 scopus 로고    scopus 로고
    • Neoceptors: Reengineering GPCRs to recognize tailored ligands
    • Jacobson, K.A., Gao, Z.G., and Liang, B.T. (2007) Neoceptors: reengineering GPCRs to recognize tailored ligands. Trends Pharmacol. Sci. 28, 111-116
    • (2007) Trends Pharmacol. Sci. , vol.28 , pp. 111-116
    • Jacobson, K.A.1    Gao, Z.G.2    Liang, B.T.3
  • 40
    • 84876712334 scopus 로고    scopus 로고
    • The therapeutic potential of allosteric ligands for free fatty acid sensitive GPCRs
    • Hudson, B.D., Ulven, T., and Milligan, G. (2013) The therapeutic potential of allosteric ligands for free fatty acid sensitive GPCRs. Curr. Topics Med. Chem. 13, 14-25
    • (2013) Curr. Topics Med. Chem. , vol.13 , pp. 14-25
    • Hudson, B.D.1    Ulven, T.2    Milligan, G.3
  • 41
    • 79953899942 scopus 로고    scopus 로고
    • Allosteric modulation of family C G-protein-coupled receptors: From molecular insights to therapeutic perspectives
    • Urwyler, S. (2011) Allosteric modulation of family C G-protein-coupled receptors: from molecular insights to therapeutic perspectives. Pharmacol. Rev. 63, 59-126
    • (2011) Pharmacol. Rev. , vol.63 , pp. 59-126
    • Urwyler, S.1


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