메뉴 건너뛰기




Volumn 13, Issue 3, 2015, Pages 137-147

Long Non-coding RNAs and Their Biological Roles in Plants

Author keywords

Epigenetic; Long non coding natural antisense transcripts (lncNATs); Long non coding RNA (lncRNA); MicroRNA; Small RNA; Target mimicry

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA; TRANSFER RNA; UNTRANSLATED RNA; PLANT RNA;

EID: 84940448362     PISSN: 16720229     EISSN: 22103244     Source Type: Journal    
DOI: 10.1016/j.gpb.2015.02.003     Document Type: Review
Times cited : (217)

References (133)
  • 1
    • 61449126060 scopus 로고    scopus 로고
    • Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
    • Ben Amor B., Wirth S., Merchan F., Laporte P., d'Aubenton-Carafa Y., Hirsch J., et al. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res 2009, 19:57-69.
    • (2009) Genome Res , vol.19 , pp. 57-69
    • Ben Amor, B.1    Wirth, S.2    Merchan, F.3    Laporte, P.4    d'Aubenton-Carafa, Y.5    Hirsch, J.6
  • 2
    • 30044434769 scopus 로고    scopus 로고
    • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    • Ravasi T., Suzuki H., Pang K.C., Katayama S., Furuno M., Okunishi R., et al. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res 2006, 16:11-19.
    • (2006) Genome Res , vol.16 , pp. 11-19
    • Ravasi, T.1    Suzuki, H.2    Pang, K.C.3    Katayama, S.4    Furuno, M.5    Okunishi, R.6
  • 3
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Consortium E.P., Birney E., Stamatoyannopoulos J.A., Dutta A., Guigo R., Gingeras T.R., et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447:799-816.
    • (2007) Nature , vol.447 , pp. 799-816
    • Consortium, E.P.1    Birney, E.2    Stamatoyannopoulos, J.A.3    Dutta, A.4    Guigo, R.5    Gingeras, T.R.6
  • 4
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-227.
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5    Feldser, D.6
  • 5
    • 33847187076 scopus 로고    scopus 로고
    • Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs
    • Matera A.G., Terns R.M., Terns M.P. Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat Rev Mol Cell Biol 2007, 8:209-220.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 209-220
    • Matera, A.G.1    Terns, R.M.2    Terns, M.P.3
  • 6
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • Ponting C.P., Oliver P.L., Reik W. Evolution and functions of long noncoding RNAs. Cell 2009, 136:629-641.
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 7
    • 84871910383 scopus 로고    scopus 로고
    • Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis
    • Liu J., Jung C., Xu J., Wang H., Deng S., Bernad L., et al. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. Plant Cell 2012, 24:4333-4345.
    • (2012) Plant Cell , vol.24 , pp. 4333-4345
    • Liu, J.1    Jung, C.2    Xu, J.3    Wang, H.4    Deng, S.5    Bernad, L.6
  • 9
    • 84863337856 scopus 로고    scopus 로고
    • Molecular functions of long non-coding RNAs in plants
    • Zhu Q.H., Wang M.B. Molecular functions of long non-coding RNAs in plants. Genes (Basel) 2012, 3:176-190.
    • (2012) Genes (Basel) , vol.3 , pp. 176-190
    • Zhu, Q.H.1    Wang, M.B.2
  • 10
    • 24744440117 scopus 로고    scopus 로고
    • Non-coding RNAs: new players in eukaryotic biology
    • Costa F.F. Non-coding RNAs: new players in eukaryotic biology. Gene 2005, 357:83-94.
    • (2005) Gene , vol.357 , pp. 83-94
    • Costa, F.F.1
  • 11
    • 84881170401 scopus 로고    scopus 로고
    • Non-coding RNAs: multi-tasking molecules in the cell
    • Gomes A.Q., Nolasco S., Soares H. Non-coding RNAs: multi-tasking molecules in the cell. Int J Mol Sci 2013, 14:16010-16039.
    • (2013) Int J Mol Sci , vol.14 , pp. 16010-16039
    • Gomes, A.Q.1    Nolasco, S.2    Soares, H.3
  • 12
    • 84894532371 scopus 로고    scopus 로고
    • On the classification of long non-coding RNAs
    • Ma L., Bajic V.B., Zhang Z. On the classification of long non-coding RNAs. RNA Biol 2013, 10:925-933.
    • (2013) RNA Biol , vol.10 , pp. 925-933
    • Ma, L.1    Bajic, V.B.2    Zhang, Z.3
  • 13
    • 84878332300 scopus 로고    scopus 로고
    • A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa
    • Liu T.T., Zhu D., Chen W., Deng W., He H., He G., et al. A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. Mol Plant 2013, 6:830-846.
    • (2013) Mol Plant , vol.6 , pp. 830-846
    • Liu, T.T.1    Zhu, D.2    Chen, W.3    Deng, W.4    He, H.5    He, G.6
  • 14
    • 24644446398 scopus 로고    scopus 로고
    • Ribo-gnome: the big world of small RNAs
    • Zamore P.D., Haley B. Ribo-gnome: the big world of small RNAs. Science 2005, 309:1519-1524.
    • (2005) Science , vol.309 , pp. 1519-1524
    • Zamore, P.D.1    Haley, B.2
  • 16
    • 84880963657 scopus 로고    scopus 로고
    • Long noncoding RNAs in development and disease of the central nervous system
    • Ng S.Y., Lin L., Soh B.S., Stanton L.W. Long noncoding RNAs in development and disease of the central nervous system. Trends Genet 2013, 29:461-468.
    • (2013) Trends Genet , vol.29 , pp. 461-468
    • Ng, S.Y.1    Lin, L.2    Soh, B.S.3    Stanton, L.W.4
  • 18
    • 57149107578 scopus 로고    scopus 로고
    • Differentiating protein-coding and noncoding RNA: challenges and ambiguities
    • Dinger M.E., Pang K.C., Mercer T.R., Mattick J.S. Differentiating protein-coding and noncoding RNA: challenges and ambiguities. PLoS Comput Biol 2008, 4:e1000176.
    • (2008) PLoS Comput Biol , vol.4
    • Dinger, M.E.1    Pang, K.C.2    Mercer, T.R.3    Mattick, J.S.4
  • 19
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki A.T., Haag J.R., Pikaard C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 20
    • 84855566591 scopus 로고    scopus 로고
    • Long noncoding RNA: unveiling hidden layer of gene regulatory networks
    • Kim E.D., Sung S. Long noncoding RNA: unveiling hidden layer of gene regulatory networks. Trends Plant Sci 2012, 17:16-21.
    • (2012) Trends Plant Sci , vol.17 , pp. 16-21
    • Kim, E.D.1    Sung, S.2
  • 21
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn J.L., Kertesz M., Wang J.K., Squazzo S.L., Xu X., Brugmann S.A., et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129:1311-1323.
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3    Squazzo, S.L.4    Xu, X.5    Brugmann, S.A.6
  • 22
    • 78650966670 scopus 로고    scopus 로고
    • Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
    • Heo J.B., Sung S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 2011, 331:76-79.
    • (2011) Science , vol.331 , pp. 76-79
    • Heo, J.B.1    Sung, S.2
  • 23
    • 72049133207 scopus 로고    scopus 로고
    • Cold-induced silencing by long antisense transcripts of an Arabidopsis polycomb target
    • Swiezewski S., Liu F., Magusin A., Dean C. Cold-induced silencing by long antisense transcripts of an Arabidopsis polycomb target. Nature 2009, 462:799-802.
    • (2009) Nature , vol.462 , pp. 799-802
    • Swiezewski, S.1    Liu, F.2    Magusin, A.3    Dean, C.4
  • 24
    • 84879606358 scopus 로고    scopus 로고
    • Long noncoding RNAs: new regulators in plant development
    • Zhang Y.C., Chen Y.Q. Long noncoding RNAs: new regulators in plant development. Biochem Biophys Res Commun 2013, 436:111-114.
    • (2013) Biochem Biophys Res Commun , vol.436 , pp. 111-114
    • Zhang, Y.C.1    Chen, Y.Q.2
  • 25
    • 84940452815 scopus 로고    scopus 로고
    • RNA regulatory networks in animals and plants: a long noncoding RNA perspective
    • Bai Y., Dai X., Harrison A.P., Chen M. RNA regulatory networks in animals and plants: a long noncoding RNA perspective. Brief Funct Genomics 2015, 14:91-101.
    • (2015) Brief Funct Genomics , vol.14 , pp. 91-101
    • Bai, Y.1    Dai, X.2    Harrison, A.P.3    Chen, M.4
  • 26
    • 0036899930 scopus 로고    scopus 로고
    • RNomics: identification and function of small, non-messenger RNAs
    • Huttenhofer A., Brosius J., Bachellerie J.P. RNomics: identification and function of small, non-messenger RNAs. Curr Opin Chem Biol 2002, 6:835-843.
    • (2002) Curr Opin Chem Biol , vol.6 , pp. 835-843
    • Huttenhofer, A.1    Brosius, J.2    Bachellerie, J.P.3
  • 27
    • 84899045771 scopus 로고    scopus 로고
    • Genome-wide discovery and characterization of maize long non-coding RNAs
    • Li L., Eichten S.R., Shimizu R., Petsch K., Yeh C.T., Wu W., et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol 2014, 15:R40.
    • (2014) Genome Biol , vol.15 , pp. R40
    • Li, L.1    Eichten, S.R.2    Shimizu, R.3    Petsch, K.4    Yeh, C.T.5    Wu, W.6
  • 28
    • 84893620730 scopus 로고    scopus 로고
    • Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis
    • Wang H., Chung P.J., Liu J., Jang I.C., Kean M.J., Xu J., et al. Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis. Genome Res 2014, 24:444-453.
    • (2014) Genome Res , vol.24 , pp. 444-453
    • Wang, H.1    Chung, P.J.2    Liu, J.3    Jang, I.C.4    Kean, M.J.5    Xu, J.6
  • 29
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    • Okazaki Y., Furuno M., Kasukawa T., Adachi J., Bono H., Kondo S., et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 2002, 420:563-573.
    • (2002) Nature , vol.420 , pp. 563-573
    • Okazaki, Y.1    Furuno, M.2    Kasukawa, T.3    Adachi, J.4    Bono, H.5    Kondo, S.6
  • 30
    • 0038688072 scopus 로고    scopus 로고
    • Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection
    • Numata K., Kanai A., Saito R., Kondo S., Adachi J., Wilming L.G., et al. Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection. Genome Res 2003, 13:1301-1306.
    • (2003) Genome Res , vol.13 , pp. 1301-1306
    • Numata, K.1    Kanai, A.2    Saito, R.3    Kondo, S.4    Adachi, J.5    Wilming, L.G.6
  • 31
    • 9144252038 scopus 로고    scopus 로고
    • Complete sequencing and characterization of 21,243 full-length human cDNAs
    • Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., et al. Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet 2004, 36:40-45.
    • (2004) Nat Genet , vol.36 , pp. 40-45
    • Ota, T.1    Suzuki, Y.2    Nishikawa, T.3    Otsuki, T.4    Sugiyama, T.5    Irie, R.6
  • 33
    • 37349038984 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
    • Chekanova J.A., Gregory B.D., Reverdatto S.V., Chen H., Kumar R., Hooker T., et al. Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell 2007, 131:1340-1353.
    • (2007) Cell , vol.131 , pp. 1340-1353
    • Chekanova, J.A.1    Gregory, B.D.2    Reverdatto, S.V.3    Chen, H.4    Kumar, R.5    Hooker, T.6
  • 34
    • 70849098812 scopus 로고    scopus 로고
    • Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast
    • Bumgarner S.L., Dowell R.D., Grisafi P., Gifford D.K., Fink G.R. Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proc Natl Acad Sci U S A 2009, 106:18321-18326.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 18321-18326
    • Bumgarner, S.L.1    Dowell, R.D.2    Grisafi, P.3    Gifford, D.K.4    Fink, G.R.5
  • 35
    • 67650921949 scopus 로고    scopus 로고
    • Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    • Khalil A.M., Guttman M., Huarte M., Garber M., Raj A., Rivea Morales D., et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009, 106:11667-11672.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 11667-11672
    • Khalil, A.M.1    Guttman, M.2    Huarte, M.3    Garber, M.4    Raj, A.5    Rivea Morales, D.6
  • 36
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky I., Shkumatava A., Jan C.H., Sive H., Bartel D.P. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 2011, 147:1537-1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 37
    • 84862833549 scopus 로고    scopus 로고
    • Long noncoding RNAs in mammalian cells: what, where, and why?
    • Chen L.L., Carmichael G.G. Long noncoding RNAs in mammalian cells: what, where, and why?. Wiley Interdiscip Rev RNA 2010, 1:2-21.
    • (2010) Wiley Interdiscip Rev RNA , vol.1 , pp. 2-21
    • Chen, L.L.1    Carmichael, G.G.2
  • 38
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011, 25:1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6
  • 39
  • 40
    • 84890805945 scopus 로고    scopus 로고
    • Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana
    • Zhu Q.H., Stephen S., Taylor J., Helliwell C.A., Wang M.B. Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana. New Phytol 2014, 201:574-584.
    • (2014) New Phytol , vol.201 , pp. 574-584
    • Zhu, Q.H.1    Stephen, S.2    Taylor, J.3    Helliwell, C.A.4    Wang, M.B.5
  • 42
    • 84922557838 scopus 로고    scopus 로고
    • Characterization of stress-responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features
    • Di C., Yuan J., Wu Y., Li J., Lin H., Hu L., et al. Characterization of stress-responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features. Plant J 2014, 80:848-861.
    • (2014) Plant J , vol.80 , pp. 848-861
    • Di, C.1    Yuan, J.2    Wu, Y.3    Li, J.4    Lin, H.5    Hu, L.6
  • 43
    • 79953723492 scopus 로고    scopus 로고
    • Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing
    • Xin M., Wang Y., Yao Y., Song N., Hu Z., Qin D., et al. Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing. BMC Plant Biol 2011, 11:61.
    • (2011) BMC Plant Biol , vol.11 , pp. 61
    • Xin, M.1    Wang, Y.2    Yao, Y.3    Song, N.4    Hu, Z.5    Qin, D.6
  • 44
    • 84965187842 scopus 로고    scopus 로고
    • Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
    • Zhang Y.C., Liao J.Y., Li Z.Y., Yu Y., Zhang J.P., Li Q.F., et al. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice. Genome Biol 2014, 15:512.
    • (2014) Genome Biol , vol.15 , pp. 512
    • Zhang, Y.C.1    Liao, J.Y.2    Li, Z.Y.3    Yu, Y.4    Zhang, J.P.5    Li, Q.F.6
  • 45
    • 84871390926 scopus 로고    scopus 로고
    • Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice
    • Lu T., Zhu C., Lu G., Guo Y., Zhou Y., Zhang Z., et al. Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice. BMC Genomics 2012, 13:721.
    • (2012) BMC Genomics , vol.13 , pp. 721
    • Lu, T.1    Zhu, C.2    Lu, G.3    Guo, Y.4    Zhou, Y.5    Zhang, Z.6
  • 46
    • 84884901660 scopus 로고    scopus 로고
    • Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing
    • Qi X., Xie S., Liu Y., Yi F., Yu J. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. Plant Mol Biol 2013, 83:459-473.
    • (2013) Plant Mol Biol , vol.83 , pp. 459-473
    • Qi, X.1    Xie, S.2    Liu, Y.3    Yi, F.4    Yu, J.5
  • 47
    • 84922016247 scopus 로고    scopus 로고
    • Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean
    • Ye C.Y., Xu H., Shen E., Liu Y., Wang Y., Shen Y., et al. Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean. Front Plant Sci 2014, 5:743.
    • (2014) Front Plant Sci , vol.5 , pp. 743
    • Ye, C.Y.1    Xu, H.2    Shen, E.3    Liu, Y.4    Wang, Y.5    Shen, Y.6
  • 48
    • 84884909700 scopus 로고    scopus 로고
    • Deep RNA-Seq uncovers the peach transcriptome landscape
    • Wang L., Zhao S., Gu C., Zhou Y., Zhou H., Ma J., et al. Deep RNA-Seq uncovers the peach transcriptome landscape. Plant Mol Biol 2013, 83:365-377.
    • (2013) Plant Mol Biol , vol.83 , pp. 365-377
    • Wang, L.1    Zhao, S.2    Gu, C.3    Zhou, Y.4    Zhou, H.5    Ma, J.6
  • 49
    • 84925843139 scopus 로고    scopus 로고
    • Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq
    • Chen J., Quan M., Zhang D. Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq. Planta 2015, 241:125-143.
    • (2015) Planta , vol.241 , pp. 125-143
    • Chen, J.1    Quan, M.2    Zhang, D.3
  • 50
    • 84907388006 scopus 로고    scopus 로고
    • Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa
    • Shuai P., Liang D., Tang S., Zhang Z., Ye C.Y., Su Y., et al. Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa. J Exp Bot 2014, 65:4975-4983.
    • (2014) J Exp Bot , vol.65 , pp. 4975-4983
    • Shuai, P.1    Liang, D.2    Tang, S.3    Zhang, Z.4    Ye, C.Y.5    Su, Y.6
  • 51
    • 84889818255 scopus 로고    scopus 로고
    • Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa
    • Yu X., Yang J., Li X.R., Liu X.X., Sun C.B., Wu F.J., et al. Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa. BMC Plant Biol 2013, 13:208.
    • (2013) BMC Plant Biol , vol.13 , pp. 208
    • Yu, X.1    Yang, J.2    Li, X.R.3    Liu, X.X.4    Sun, C.B.5    Wu, F.J.6
  • 52
    • 67650091251 scopus 로고    scopus 로고
    • Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
    • Zhang X., Bernatavichute Y.V., Cokus S., Pellegrini M., Jacobsen S.E. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol 2009, 10:R62.
    • (2009) Genome Biol , vol.10 , pp. R62
    • Zhang, X.1    Bernatavichute, Y.V.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.E.5
  • 53
    • 79956066320 scopus 로고    scopus 로고
    • Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
    • Roudier F., Ahmed I., Berard C., Sarazin A., Mary-Huard T., Cortijo S., et al. Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J 2011, 30:1928-1938.
    • (2011) EMBO J , vol.30 , pp. 1928-1938
    • Roudier, F.1    Ahmed, I.2    Berard, C.3    Sarazin, A.4    Mary-Huard, T.5    Cortijo, S.6
  • 54
    • 33745442032 scopus 로고    scopus 로고
    • Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts
    • Hirsch J., Lefort V., Vankersschaver M., Boualem A., Lucas A., Thermes C., et al. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts. Plant Physiol 2006, 140:1192-1204.
    • (2006) Plant Physiol , vol.140 , pp. 1192-1204
    • Hirsch, J.1    Lefort, V.2    Vankersschaver, M.3    Boualem, A.4    Lucas, A.5    Thermes, C.6
  • 55
    • 8144225486 scopus 로고    scopus 로고
    • MicroRNA genes are transcribed by RNA polymerase II
    • Lee Y., Kim M., Han J., Yeom K.H., Lee S., Baek S.H., et al. MicroRNA genes are transcribed by RNA polymerase II. EMBO J 2004, 23:4051-4060.
    • (2004) EMBO J , vol.23 , pp. 4051-4060
    • Lee, Y.1    Kim, M.2    Han, J.3    Yeom, K.H.4    Lee, S.5    Baek, S.H.6
  • 56
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development
    • Chen X.M. Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 2009, 25:21-44.
    • (2009) Annu Rev Cell Dev Biol , vol.25 , pp. 21-44
    • Chen, X.M.1
  • 57
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • Rajagopalan R., Vaucheret H., Trejo J., Bartel D.P. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006, 20:3407-3425.
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 58
    • 84901411737 scopus 로고    scopus 로고
    • Long non-coding RNAs: a novel endogenous source for the generation of Dicer-like 1-dependent small RNAs in Arabidopsis thaliana
    • Ma X., Shao C., Jin Y., Wang H., Meng Y. Long non-coding RNAs: a novel endogenous source for the generation of Dicer-like 1-dependent small RNAs in Arabidopsis thaliana. RNA Biol 2014, 11:373-390.
    • (2014) RNA Biol , vol.11 , pp. 373-390
    • Ma, X.1    Shao, C.2    Jin, Y.3    Wang, H.4    Meng, Y.5
  • 59
    • 84926308974 scopus 로고    scopus 로고
    • Plant biology: Coding in non-coding RNAs
    • Waterhouse P.M., Hellens R.P. Plant biology: Coding in non-coding RNAs. Nature 2015, 520:41-42.
    • (2015) Nature , vol.520 , pp. 41-42
    • Waterhouse, P.M.1    Hellens, R.P.2
  • 62
    • 84875750847 scopus 로고    scopus 로고
    • Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants
    • Wu H.J., Wang Z.M., Wang M., Wang X.J. Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants. Plant Physiol 2013, 161:1875-1884.
    • (2013) Plant Physiol , vol.161 , pp. 1875-1884
    • Wu, H.J.1    Wang, Z.M.2    Wang, M.3    Wang, X.J.4
  • 63
    • 79955705363 scopus 로고    scopus 로고
    • MicroRNA networks and developmental plasticity in plants
    • Rubio-Somoza I., Weigel D. MicroRNA networks and developmental plasticity in plants. Trends Plant Sci 2011, 16:258-264.
    • (2011) Trends Plant Sci , vol.16 , pp. 258-264
    • Rubio-Somoza, I.1    Weigel, D.2
  • 64
    • 79961170994 scopus 로고    scopus 로고
    • A ceRNA hypothesis: the Rosetta stone of a hidden RNA language?
    • Salmena L., Poliseno L., Tay Y., Kats L., Pandolfi P.P. A ceRNA hypothesis: the Rosetta stone of a hidden RNA language?. Cell 2011, 146:353-358.
    • (2011) Cell , vol.146 , pp. 353-358
    • Salmena, L.1    Poliseno, L.2    Tay, Y.3    Kats, L.4    Pandolfi, P.P.5
  • 67
    • 84861216292 scopus 로고    scopus 로고
    • Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants
    • Meng Y., Shao C., Wang H., Jin Y. Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants. BMC Genomics 2012, 13:197.
    • (2012) BMC Genomics , vol.13 , pp. 197
    • Meng, Y.1    Shao, C.2    Wang, H.3    Jin, Y.4
  • 68
    • 77957328824 scopus 로고    scopus 로고
    • A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana
    • Todesco M., Rubio-Somoza I., Paz-Ares J., Weigel D. A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genet 2010, 6:e1001031.
    • (2010) PLoS Genet , vol.6 , pp. e1001031
    • Todesco, M.1    Rubio-Somoza, I.2    Paz-Ares, J.3    Weigel, D.4
  • 69
    • 79956224325 scopus 로고    scopus 로고
    • Alternate approaches to repress endogenous microRNA activity in Arabidopsis thaliana
    • Eamens A.L., Wang M.B. Alternate approaches to repress endogenous microRNA activity in Arabidopsis thaliana. Plant Signal Behav 2011, 6:349-359.
    • (2011) Plant Signal Behav , vol.6 , pp. 349-359
    • Eamens, A.L.1    Wang, M.B.2
  • 70
    • 84859067739 scopus 로고    scopus 로고
    • Effective small RNA destruction by the expression of a short tandem target mimic in Arabidopsis
    • Yan J., Gu Y., Jia X., Kang W., Pan S., Tang X., et al. Effective small RNA destruction by the expression of a short tandem target mimic in Arabidopsis. Plant Cell 2012, 24:415-427.
    • (2012) Plant Cell , vol.24 , pp. 415-427
    • Yan, J.1    Gu, Y.2    Jia, X.3    Kang, W.4    Pan, S.5    Tang, X.6
  • 71
    • 84884815512 scopus 로고    scopus 로고
    • Flowering time regulation: photoperiod- and temperature-sensing in leaves
    • Song Y.H., Ito S., Imaizumi T. Flowering time regulation: photoperiod- and temperature-sensing in leaves. Trends Plant Sci 2013, 18:575-583.
    • (2013) Trends Plant Sci , vol.18 , pp. 575-583
    • Song, Y.H.1    Ito, S.2    Imaizumi, T.3
  • 72
    • 84868514154 scopus 로고    scopus 로고
    • Vernalization-a cold-induced epigenetic switch
    • Song J., Angel A., Howard M., Dean C. Vernalization-a cold-induced epigenetic switch. J Cell Sci 2012, 125:3723-3731.
    • (2012) J Cell Sci , vol.125 , pp. 3723-3731
    • Song, J.1    Angel, A.2    Howard, M.3    Dean, C.4
  • 73
    • 17044370478 scopus 로고    scopus 로고
    • Vernalization and flowering time
    • Amasino R.M. Vernalization and flowering time. Curr Opin Biotechnol 2005, 16:154-158.
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 154-158
    • Amasino, R.M.1
  • 74
    • 84865598293 scopus 로고    scopus 로고
    • Chromatin regulation of flowering
    • He Y. Chromatin regulation of flowering. Trends Plant Sci 2012, 17:556-562.
    • (2012) Trends Plant Sci , vol.17 , pp. 556-562
    • He, Y.1
  • 75
    • 79957536771 scopus 로고    scopus 로고
    • Encoding memory of winter by noncoding RNAs
    • Heo J.B., Sung S. Encoding memory of winter by noncoding RNAs. Epigenetics 2011, 6:544-547.
    • (2011) Epigenetics , vol.6 , pp. 544-547
    • Heo, J.B.1    Sung, S.2
  • 76
    • 0033133554 scopus 로고    scopus 로고
    • FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering
    • Michaels S.D., Amasino R.M. FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell 1999, 11:949-956.
    • (1999) Plant Cell , vol.11 , pp. 949-956
    • Michaels, S.D.1    Amasino, R.M.2
  • 77
    • 84877354511 scopus 로고    scopus 로고
    • R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus
    • Sun Q.W., Csorba T., Skourti-Stathaki K., Proudfoot N.J., Dean C. R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus. Science 2013, 340:619-621.
    • (2013) Science , vol.340 , pp. 619-621
    • Sun, Q.W.1    Csorba, T.2    Skourti-Stathaki, K.3    Proudfoot, N.J.4    Dean, C.5
  • 78
    • 74849099777 scopus 로고    scopus 로고
    • Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing
    • Liu F., Marquardt S., Lister C., Swiezewski S., Dean C. Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing. Science 2010, 327:94-97.
    • (2010) Science , vol.327 , pp. 94-97
    • Liu, F.1    Marquardt, S.2    Lister, C.3    Swiezewski, S.4    Dean, C.5
  • 79
    • 84879639406 scopus 로고    scopus 로고
    • How cool is that: an interview with Caroline Dean
    • Gitschier J. How cool is that: an interview with Caroline Dean. PLoS Genet 2013, 9:e1003593.
    • (2013) PLoS Genet , vol.9
    • Gitschier, J.1
  • 80
    • 79955125389 scopus 로고    scopus 로고
    • Long non-coding RNAs and chromatin regulation
    • De Lucia F., Dean C. Long non-coding RNAs and chromatin regulation. Curr Opin Plant Biol 2011, 14:168-173.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 168-173
    • De Lucia, F.1    Dean, C.2
  • 81
    • 78751501891 scopus 로고    scopus 로고
    • Regulation of the floral repressor gene FLC: the complexity of transcription in a chromatin context
    • Crevillen P., Dean C. Regulation of the floral repressor gene FLC: the complexity of transcription in a chromatin context. Curr Opin Plant Biol 2011, 14:38-44.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 38-44
    • Crevillen, P.1    Dean, C.2
  • 82
    • 84863115947 scopus 로고    scopus 로고
    • A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
    • Ding J., Lu Q., Ouyang Y., Mao H., Zhang P., Yao J., et al. A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice. Proc Natl Acad Sci U S A 2012, 109:2654-2659.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 2654-2659
    • Ding, J.1    Lu, Q.2    Ouyang, Y.3    Mao, H.4    Zhang, P.5    Yao, J.6
  • 83
    • 84862777808 scopus 로고    scopus 로고
    • Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA
    • Zhou H., Liu Q., Li J., Jiang D., Zhou L., Wu P., et al. Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA. Cell Res 2012, 22:649-660.
    • (2012) Cell Res , vol.22 , pp. 649-660
    • Zhou, H.1    Liu, Q.2    Li, J.3    Jiang, D.4    Zhou, L.5    Wu, P.6
  • 84
    • 84870575059 scopus 로고    scopus 로고
    • RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice
    • Ding J., Shen J., Mao H., Xie W., Li X., Zhang Q. RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice. Mol Plant 2012, 5:1210-1216.
    • (2012) Mol Plant , vol.5 , pp. 1210-1216
    • Ding, J.1    Shen, J.2    Mao, H.3    Xie, W.4    Li, X.5    Zhang, Q.6
  • 85
    • 33847042609 scopus 로고    scopus 로고
    • Light-regulated transcriptional networks in higher plants
    • Jiao Y., Lau O.S., Deng X.W. Light-regulated transcriptional networks in higher plants. Nat Rev Genet 2007, 8:217-230.
    • (2007) Nat Rev Genet , vol.8 , pp. 217-230
    • Jiao, Y.1    Lau, O.S.2    Deng, X.W.3
  • 86
    • 84904310301 scopus 로고    scopus 로고
    • Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light
    • Wang Y., Fan X., Lin F., He G., Terzaghi W., Zhu D., et al. Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light. Proc Natl Acad Sci U S A 2014, 111:10359-10364.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 10359-10364
    • Wang, Y.1    Fan, X.2    Lin, F.3    He, G.4    Terzaghi, W.5    Zhu, D.6
  • 87
    • 84901406283 scopus 로고    scopus 로고
    • SPX4 negatively regulates phosphate signaling and homeostasis through its interaction with PHR2 in rice
    • Lv Q.D., Zhong Y.J., Wang Y.G., Zhang L., Shi J., Wu Z.C., et al. SPX4 negatively regulates phosphate signaling and homeostasis through its interaction with PHR2 in rice. Plant Cell 2014, 26:1586-1597.
    • (2014) Plant Cell , vol.26 , pp. 1586-1597
    • Lv, Q.D.1    Zhong, Y.J.2    Wang, Y.G.3    Zhang, L.4    Shi, J.5    Wu, Z.C.6
  • 88
    • 84891512127 scopus 로고    scopus 로고
    • Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery
    • Secco D., Jabnoune M., Walker H., Shou H., Wu P., Poirier Y., et al. Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell 2013, 25:4285-4304.
    • (2013) Plant Cell , vol.25 , pp. 4285-4304
    • Secco, D.1    Jabnoune, M.2    Walker, H.3    Shou, H.4    Wu, P.5    Poirier, Y.6
  • 89
    • 84888406718 scopus 로고    scopus 로고
    • A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness
    • Jabnoune M., Secco D., Lecampion C., Robaglia C., Shu Q.Y., Poirier Y. A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness. Plant Cell 2013, 25:4166-4182.
    • (2013) Plant Cell , vol.25 , pp. 4166-4182
    • Jabnoune, M.1    Secco, D.2    Lecampion, C.3    Robaglia, C.4    Shu, Q.Y.5    Poirier, Y.6
  • 90
    • 84888397809 scopus 로고    scopus 로고
    • Nitrogen limitation adaptation, a target of microRNA827, mediates degradation of plasma membrane-localized phosphate transporters to maintain phosphate homeostasis in Arabidopsis
    • Lin W.Y., Huang T.K., Chiou T.J. Nitrogen limitation adaptation, a target of microRNA827, mediates degradation of plasma membrane-localized phosphate transporters to maintain phosphate homeostasis in Arabidopsis. Plant Cell 2013, 25:4061-4074.
    • (2013) Plant Cell , vol.25 , pp. 4061-4074
    • Lin, W.Y.1    Huang, T.K.2    Chiou, T.J.3
  • 91
    • 33745270651 scopus 로고    scopus 로고
    • Regulation of phosphate homeostasis by microRNA in Arabidopsis
    • Chiou T.J., Aung K., Lin S.I., Wu C.C., Chiang S.F., Su C.L. Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 2006, 18:412-421.
    • (2006) Plant Cell , vol.18 , pp. 412-421
    • Chiou, T.J.1    Aung, K.2    Lin, S.I.3    Wu, C.C.4    Chiang, S.F.5    Su, C.L.6
  • 92
    • 33745960196 scopus 로고    scopus 로고
    • Datt Pant B, Stitt M, Scheible WR. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
    • Bari R. Datt Pant B, Stitt M, Scheible WR. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 2006, 141:988-999.
    • (2006) Plant Physiol , vol.141 , pp. 988-999
    • Bari, R.1
  • 93
    • 0035999376 scopus 로고    scopus 로고
    • MacDonald-Comber Petetot J, Somerville C, Poirier Y. Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylem
    • Hamburger D., Rezzonico E. MacDonald-Comber Petetot J, Somerville C, Poirier Y. Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylem. Plant Cell 2002, 14:889-902.
    • (2002) Plant Cell , vol.14 , pp. 889-902
    • Hamburger, D.1    Rezzonico, E.2
  • 94
    • 77949537126 scopus 로고    scopus 로고
    • Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons
    • Secco D., Baumann A., Poirier Y. Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons. Plant Physiol 2010, 152:1693-1704.
    • (2010) Plant Physiol , vol.152 , pp. 1693-1704
    • Secco, D.1    Baumann, A.2    Poirier, Y.3
  • 95
    • 0038405165 scopus 로고    scopus 로고
    • Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status
    • Wasaki J., Yonetani R., Shinano T., Kai M., Osaki M. Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status. New Phytol 2003, 158:239-248.
    • (2003) New Phytol , vol.158 , pp. 239-248
    • Wasaki, J.1    Yonetani, R.2    Shinano, T.3    Kai, M.4    Osaki, M.5
  • 96
    • 0031106086 scopus 로고    scopus 로고
    • Differential expression of TPS11, a phosphate starvation-induced gene in tomato
    • Liu C., Muchhal U.S., Raghothama K.G. Differential expression of TPS11, a phosphate starvation-induced gene in tomato. Plant Mol Biol 1997, 33:867-874.
    • (1997) Plant Mol Biol , vol.33 , pp. 867-874
    • Liu, C.1    Muchhal, U.S.2    Raghothama, K.G.3
  • 97
    • 84904556580 scopus 로고    scopus 로고
    • Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA
    • Wunderlich M., Gross-Hardt R., Schoffl F. Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA. Plant Mol Biol 2014, 85:541-550.
    • (2014) Plant Mol Biol , vol.85 , pp. 541-550
    • Wunderlich, M.1    Gross-Hardt, R.2    Schoffl, F.3
  • 98
    • 58149503664 scopus 로고    scopus 로고
    • Small-interfering RNAs from natural antisense transcripts derived from a cellulose synthase gene modulate cell wall biosynthesis in barley
    • Held M.A., Penning B., Brandt A.S., Kessans S.A., Yong W., Scofield S.R., et al. Small-interfering RNAs from natural antisense transcripts derived from a cellulose synthase gene modulate cell wall biosynthesis in barley. Proc Natl Acad Sci U S A 2008, 105:20534-20539.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 20534-20539
    • Held, M.A.1    Penning, B.2    Brandt, A.S.3    Kessans, S.A.4    Yong, W.5    Scofield, S.R.6
  • 99
    • 36849089069 scopus 로고    scopus 로고
    • A natural antisense transcript of the Petunia hybrida Sho gene suggests a role for an antisense mechanism in cytokinin regulation
    • Zubko E., Meyer P. A natural antisense transcript of the Petunia hybrida Sho gene suggests a role for an antisense mechanism in cytokinin regulation. Plant J 2007, 52:1131-1139.
    • (2007) Plant J , vol.52 , pp. 1131-1139
    • Zubko, E.1    Meyer, P.2
  • 100
    • 0028173586 scopus 로고
    • Enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth
    • Crespi M.D., Jurkevitch E., Poiret M., d'Aubenton-Carafa Y., Petrovics G., Kondorosi E., et al. Enod40, a gene expressed during nodule organogenesis, codes for a non-translatable RNA involved in plant growth. EMBO J 1994, 13:5099-5112.
    • (1994) EMBO J , vol.13 , pp. 5099-5112
    • Crespi, M.D.1    Jurkevitch, E.2    Poiret, M.3    d'Aubenton-Carafa, Y.4    Petrovics, G.5    Kondorosi, E.6
  • 101
    • 0028519306 scopus 로고
    • Comparison of soybean and pea ENOD40 cDNA clones representing genes expressed during both early and late stages of nodule development
    • Matvienko M., Van de Sande K., Yang W.C., van Kammen A., Bisseling T., Franssen H. Comparison of soybean and pea ENOD40 cDNA clones representing genes expressed during both early and late stages of nodule development. Plant Mol Biol 1994, 26:487-493.
    • (1994) Plant Mol Biol , vol.26 , pp. 487-493
    • Matvienko, M.1    Van de Sande, K.2    Yang, W.C.3    van Kammen, A.4    Bisseling, T.5    Franssen, H.6
  • 102
    • 0027584631 scopus 로고
    • Characterization of GmENOD40, a gene showing novel patterns of cell-specific expression during soybean nodule development
    • Yang W.C., Katinakis P., Hendriks P., Smolders A., de Vries F., Spee J., et al. Characterization of GmENOD40, a gene showing novel patterns of cell-specific expression during soybean nodule development. Plant J 1993, 3:573-585.
    • (1993) Plant J , vol.3 , pp. 573-585
    • Yang, W.C.1    Katinakis, P.2    Hendriks, P.3    Smolders, A.4    de Vries, F.5    Spee, J.6
  • 103
    • 0033747759 scopus 로고    scopus 로고
    • Analysis of ENOD40 expression in alb1, a symbiotic mutant of Lotus japonicus that forms empty nodules with incompletely developed nodule vascular bundles
    • Imaizumi-Anraku H., Kouchi H., Syono K., Akao S., Kawaguchi M. Analysis of ENOD40 expression in alb1, a symbiotic mutant of Lotus japonicus that forms empty nodules with incompletely developed nodule vascular bundles. Mol Gen Genet 2000, 264:402-410.
    • (2000) Mol Gen Genet , vol.264 , pp. 402-410
    • Imaizumi-Anraku, H.1    Kouchi, H.2    Syono, K.3    Akao, S.4    Kawaguchi, M.5
  • 104
    • 0033118515 scopus 로고    scopus 로고
    • Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules
    • Kouchi H., Takane K., So R.B., Ladha J.K., Reddy P.M. Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules. Plant J 1999, 18:121-129.
    • (1999) Plant J , vol.18 , pp. 121-129
    • Kouchi, H.1    Takane, K.2    So, R.B.3    Ladha, J.K.4    Reddy, P.M.5
  • 105
    • 0033846667 scopus 로고    scopus 로고
    • Lotus japonicus contains two distinct ENOD40 genes that are expressed in symbiotic, nonsymbiotic, and embryonic tissues
    • Flemetakis E., Kavroulakis N., Quaedvlieg N.E., Spaink H.P., Dimou M., Roussis A., et al. Lotus japonicus contains two distinct ENOD40 genes that are expressed in symbiotic, nonsymbiotic, and embryonic tissues. Mol Plant Microbe Interact 2000, 13:987-994.
    • (2000) Mol Plant Microbe Interact , vol.13 , pp. 987-994
    • Flemetakis, E.1    Kavroulakis, N.2    Quaedvlieg, N.E.3    Spaink, H.P.4    Dimou, M.5    Roussis, A.6
  • 106
    • 0035054410 scopus 로고    scopus 로고
    • ENOD40 expression in the pericycle precedes cortical cell division in Rhizobium-legume interaction and the highly conserved internal region of the gene does not encode a peptide
    • Compaan B., Yang W.C., Bisseling T., Franssen H. ENOD40 expression in the pericycle precedes cortical cell division in Rhizobium-legume interaction and the highly conserved internal region of the gene does not encode a peptide. Plant Soil 2001, 230:1-8.
    • (2001) Plant Soil , vol.230 , pp. 1-8
    • Compaan, B.1    Yang, W.C.2    Bisseling, T.3    Franssen, H.4
  • 107
    • 0034751157 scopus 로고    scopus 로고
    • Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex
    • Sousa C., Johansson C., Charon C., Manyani H., Sautter C., Kondorosi A., et al. Translational and structural requirements of the early nodulin gene enod40, a short-open reading frame-containing RNA, for elicitation of a cell-specific growth response in the alfalfa root cortex. Mol Cell Biol 2001, 21:354-366.
    • (2001) Mol Cell Biol , vol.21 , pp. 354-366
    • Sousa, C.1    Johansson, C.2    Charon, C.3    Manyani, H.4    Sautter, C.5    Kondorosi, A.6
  • 109
    • 34250679403 scopus 로고    scopus 로고
    • Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants
    • Gultyaev A.P., Roussis A. Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants. Nucleic Acids Res 2007, 35:3144-3152.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3144-3152
    • Gultyaev, A.P.1    Roussis, A.2
  • 110
    • 1842712418 scopus 로고    scopus 로고
    • Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula
    • Campalans A., Kondorosi A., Crespi M. Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula. Plant Cell 2004, 16:1047-1059.
    • (2004) Plant Cell , vol.16 , pp. 1047-1059
    • Campalans, A.1    Kondorosi, A.2    Crespi, M.3
  • 112
    • 84904915689 scopus 로고    scopus 로고
    • A long noncoding way to alternative splicing in plant development
    • Kornblihtt A.R. A long noncoding way to alternative splicing in plant development. Dev Cell 2014, 30:117-119.
    • (2014) Dev Cell , vol.30 , pp. 117-119
    • Kornblihtt, A.R.1
  • 113
    • 84875200698 scopus 로고    scopus 로고
    • Functional implications of genome topology
    • Cavalli G., Misteli T. Functional implications of genome topology. Nat Struct Mol Biol 2013, 20:290-299.
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 290-299
    • Cavalli, G.1    Misteli, T.2
  • 114
    • 84905591635 scopus 로고    scopus 로고
    • Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop
    • Ariel F., Jegu T., Latrasse D., Romero-Barrios N., Christ A., Benhamed M., et al. Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop. Mol Cell 2014, 55:383-396.
    • (2014) Mol Cell , vol.55 , pp. 383-396
    • Ariel, F.1    Jegu, T.2    Latrasse, D.3    Romero-Barrios, N.4    Christ, A.5    Benhamed, M.6
  • 115
    • 84875605101 scopus 로고    scopus 로고
    • CLASP-mediated cortical microtubule organization guides PIN polarization axis
    • Kakar K., Zhang H., Scheres B., Dhonukshe P. CLASP-mediated cortical microtubule organization guides PIN polarization axis. Nature 2013, 495:529-533.
    • (2013) Nature , vol.495 , pp. 529-533
    • Kakar, K.1    Zhang, H.2    Scheres, B.3    Dhonukshe, P.4
  • 118
    • 84941100252 scopus 로고    scopus 로고
    • LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs
    • Ma L., Li A., Zou D., Xu X., Xia L., Yu J., et al. LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res 2015, 43:D187-D192.
    • (2015) Nucleic Acids Res , vol.43 , pp. D187-D192
    • Ma, L.1    Li, A.2    Zou, D.3    Xu, X.4    Xia, L.5    Yu, J.6
  • 119
    • 79959949911 scopus 로고    scopus 로고
    • NcFANs: a web server for functional annotation of long non-coding RNAs
    • Liao Q., Xiao H., Bu D., Xie C., Miao R., Luo H., et al. NcFANs: a web server for functional annotation of long non-coding RNAs. Nucleic Acids Res 2011, 39:W118-W124.
    • (2011) Nucleic Acids Res , vol.39 , pp. W118-W124
    • Liao, Q.1    Xiao, H.2    Bu, D.3    Xie, C.4    Miao, R.5    Luo, H.6
  • 120
    • 77957317651 scopus 로고    scopus 로고
    • NcRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs
    • Zhang Y., Guan D.G., Yang J.H., Shao P., Zhou H., Qu L.H. NcRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. RNA 2010, 16:1889-1901.
    • (2010) RNA , vol.16 , pp. 1889-1901
    • Zhang, Y.1    Guan, D.G.2    Yang, J.H.3    Shao, P.4    Zhou, H.5    Qu, L.H.6
  • 122
    • 84862209063 scopus 로고    scopus 로고
    • PlantNATsDB: a comprehensive database of plant natural antisense transcripts
    • Chen D., Yuan C., Zhang J., Zhang Z., Bai L., Meng Y., et al. PlantNATsDB: a comprehensive database of plant natural antisense transcripts. Nucleic Acids Res 2012, 40:D1187-D1193.
    • (2012) Nucleic Acids Res , vol.40 , pp. D1187-D1193
    • Chen, D.1    Yuan, C.2    Zhang, J.3    Zhang, Z.4    Bai, L.5    Meng, Y.6
  • 125
    • 84860742355 scopus 로고    scopus 로고
    • NONCODE v3.0: integrative annotation of long noncoding RNAs
    • Bu D., Yu K., Sun S., Xie C., Skogerbo G., Miao R., et al. NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res 2012, 40:D210-D215.
    • (2012) Nucleic Acids Res , vol.40 , pp. D210-D215
    • Bu, D.1    Yu, K.2    Sun, S.3    Xie, C.4    Skogerbo, G.5    Miao, R.6
  • 126
    • 84891798006 scopus 로고    scopus 로고
    • NONCODEv4: exploring the world of long non-coding RNA genes
    • Xie C., Yuan J., Li H., Li M., Zhao G., Bu D., et al. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res 2014, 42:D98-D103.
    • (2014) Nucleic Acids Res , vol.42 , pp. D98-D103
    • Xie, C.1    Yuan, J.2    Li, H.3    Li, M.4    Zhao, G.5    Bu, D.6
  • 128
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z., Gerstein M., Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 129
    • 84926287259 scopus 로고    scopus 로고
    • Long noncoding RNA transcriptome of plants
    • Liu J., Wang H., Chua N.H. Long noncoding RNA transcriptome of plants. Plant Biotechnol J 2015, 13:319-328.
    • (2015) Plant Biotechnol J , vol.13 , pp. 319-328
    • Liu, J.1    Wang, H.2    Chua, N.H.3
  • 131
    • 84883757684 scopus 로고    scopus 로고
    • The First 50 Plant Genomes
    • Plant Genome 2013;6:10.3835/plantgenome2013.03.0001in.
    • Michael TP, Jackson S. The First 50 Plant Genomes. Plant Genome 2013;6:10.3835/plantgenome2013.03.0001in.
    • Michael, T.P.1    Jackson, S.2
  • 133
    • 84922910242 scopus 로고    scopus 로고
    • Genome editing in rice and wheat using the CRISPR/Cas system
    • Shan Q.W., Wang Y.P., Li J., Gao C.X. Genome editing in rice and wheat using the CRISPR/Cas system. Nat Protoc 2014, 9:2395-2410.
    • (2014) Nat Protoc , vol.9 , pp. 2395-2410
    • Shan, Q.W.1    Wang, Y.P.2    Li, J.3    Gao, C.X.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.