메뉴 건너뛰기




Volumn 436, Issue 2, 2013, Pages 111-114

Long noncoding RNAs: New regulators in plant development

Author keywords

LncRNA; LncRNA mediator; Plant development; Reproductive development; Stress response

Indexed keywords

PLANT LONG NONCODING RNA; PLANT RNA; UNCLASSIFIED DRUG;

EID: 84879606358     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2013.05.086     Document Type: Short Survey
Times cited : (138)

References (33)
  • 1
    • 84855566591 scopus 로고    scopus 로고
    • Long noncoding RNA: unveiling hidden layer of gene regulatory networks
    • Kim E.D., Sung S. Long noncoding RNA: unveiling hidden layer of gene regulatory networks. Trends Plant Sci. 2012, 17:16-21.
    • (2012) Trends Plant Sci. , vol.17 , pp. 16-21
    • Kim, E.D.1    Sung, S.2
  • 2
    • 84869489307 scopus 로고    scopus 로고
    • The role of long non-coding RNA in transcriptional gene silencing
    • Wierzbicki A.T. The role of long non-coding RNA in transcriptional gene silencing. Curr. Opin. Plant Biol. 2012, 15:517-522.
    • (2012) Curr. Opin. Plant Biol. , vol.15 , pp. 517-522
    • Wierzbicki, A.T.1
  • 3
    • 78650966670 scopus 로고    scopus 로고
    • Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
    • Heo J.B., Sung S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 2011, 331:76-79.
    • (2011) Science , vol.331 , pp. 76-79
    • Heo, J.B.1    Sung, S.2
  • 4
    • 84871910383 scopus 로고    scopus 로고
    • Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis
    • Liu J., Jung C., Xu J., Wang H., Deng S., Bernad L., Arenas-Huertero C., Chua N.H. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. Plant Cell 2012, 24:4333-4345.
    • (2012) Plant Cell , vol.24 , pp. 4333-4345
    • Liu, J.1    Jung, C.2    Xu, J.3    Wang, H.4    Deng, S.5    Bernad, L.6    Arenas-Huertero, C.7    Chua, N.H.8
  • 5
    • 79953723492 scopus 로고    scopus 로고
    • Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing
    • Xin M., Wang Y., Yao Y., Song N., Hu Z., Qin D., Xie C., Peng H., Ni Z., Sun Q. Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing. BMC Plant Biol. 2011, 11:61.
    • (2011) BMC Plant Biol. , vol.11 , pp. 61
    • Xin, M.1    Wang, Y.2    Yao, Y.3    Song, N.4    Hu, Z.5    Qin, D.6    Xie, C.7    Peng, H.8    Ni, Z.9    Sun, Q.10
  • 6
    • 84875750847 scopus 로고    scopus 로고
    • Widespread long noncoding RNAs as endogenous target mimics for MicroRNAs in plants
    • Wu H.J., Wang Z.M., Wang M., Wang X.J. Widespread long noncoding RNAs as endogenous target mimics for MicroRNAs in plants. Plant Physiol. 2013, 161:1875-1884.
    • (2013) Plant Physiol. , vol.161 , pp. 1875-1884
    • Wu, H.J.1    Wang, Z.M.2    Wang, M.3    Wang, X.J.4
  • 8
    • 84865079670 scopus 로고    scopus 로고
    • Computational identification and functional predictions of long noncoding RNA in Zea mays
    • Boerner S., McGinnis K.M. Computational identification and functional predictions of long noncoding RNA in Zea mays. PLoS One 2012, 7:e43047.
    • (2012) PLoS One , vol.7
    • Boerner, S.1    McGinnis, K.M.2
  • 9
    • 0031106086 scopus 로고    scopus 로고
    • Differential expression of TPS11, a phosphate starvation-induced gene in tomato
    • Liu C., Muchhal U.S., Raghothama K.G. Differential expression of TPS11, a phosphate starvation-induced gene in tomato. Plant Mol. Biol. 1997, 33:867-874.
    • (1997) Plant Mol. Biol. , vol.33 , pp. 867-874
    • Liu, C.1    Muchhal, U.S.2    Raghothama, K.G.3
  • 12
    • 0032842049 scopus 로고    scopus 로고
    • The down-regulation of Mt4-like genes by phosphate fertilization occurs systemically and involves phosphate translocation to the shoots
    • Burleigh S.H., Harrison M.J. The down-regulation of Mt4-like genes by phosphate fertilization occurs systemically and involves phosphate translocation to the shoots. Plant Physiol. 1999, 119:241-248.
    • (1999) Plant Physiol. , vol.119 , pp. 241-248
    • Burleigh, S.H.1    Harrison, M.J.2
  • 13
    • 33644872219 scopus 로고    scopus 로고
    • Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation
    • Shin H., Shin H.S., Chen R., Harrison M.J. Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation. Plant J. 2006, 45:712-726.
    • (2006) Plant J. , vol.45 , pp. 712-726
    • Shin, H.1    Shin, H.S.2    Chen, R.3    Harrison, M.J.4
  • 14
    • 72049133207 scopus 로고    scopus 로고
    • Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
    • Swiezewski S., Liu F., Magusin A., Dean C. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 2009, 462:799-802.
    • (2009) Nature , vol.462 , pp. 799-802
    • Swiezewski, S.1    Liu, F.2    Magusin, A.3    Dean, C.4
  • 15
    • 79959330166 scopus 로고    scopus 로고
    • Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts
    • Helliwell C.A., Robertson M., Finnegan E.J., Buzas D.M., Dennis E.S. Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts. PLoS One 2011, 6:e21513.
    • (2011) PLoS One , vol.6
    • Helliwell, C.A.1    Robertson, M.2    Finnegan, E.J.3    Buzas, D.M.4    Dennis, E.S.5
  • 17
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • Rinn J.L., Chang H.Y. Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 2012, 81:145-166.
    • (2012) Annu. Rev. Biochem. , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 20
    • 84870575059 scopus 로고    scopus 로고
    • RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice
    • Ding J., Shen J., Mao H., Xie W., Li X., Zhang Q. RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice. Mol. Plant 2012, 5:1210-1216.
    • (2012) Mol. Plant , vol.5 , pp. 1210-1216
    • Ding, J.1    Shen, J.2    Mao, H.3    Xie, W.4    Li, X.5    Zhang, Q.6
  • 21
    • 33644781949 scopus 로고    scopus 로고
    • Cucumis sativusL.cv. Winter Long
    • Cho J., Koo D.H., Nam Y.W., Han C.T., Lim H.T., Wook J., Hur B.Y.K. Isolation and characterization of cDNA clones expressed under male sex expression conditions in a monoecious cucumber plant. Euphytica 2005, 146:271-281.
    • (2005) Euphytica , vol.146 , pp. 271-281
    • Cho, J.1    Koo, D.H.2    Nam, Y.W.3    Han, C.T.4    Lim, H.T.5    Wook, J.6    Hur, B.Y.K.7
  • 22
    • 51849154682 scopus 로고    scopus 로고
    • Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize
    • Ma J., Yan B., Qu Y., Qin F., Yang Y., Hao X., Yu J., Zhao Q., Zhu D., Ao G. Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize. J. Cell. Biochem. 2008, 105:136-146.
    • (2008) J. Cell. Biochem. , vol.105 , pp. 136-146
    • Ma, J.1    Yan, B.2    Qu, Y.3    Qin, F.4    Yang, Y.5    Hao, X.6    Yu, J.7    Zhao, Q.8    Zhu, D.9    Ao, G.10
  • 23
    • 84860723671 scopus 로고    scopus 로고
    • A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis
    • Wu J., Okada T., Fukushima T., Tsudzuki T., Sugiura M., Yukawa Y. A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis. RNA Biol. 2012, 9:302-313.
    • (2012) RNA Biol. , vol.9 , pp. 302-313
    • Wu, J.1    Okada, T.2    Fukushima, T.3    Tsudzuki, T.4    Sugiura, M.5    Yukawa, Y.6
  • 25
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki A.T., Haag J.R., Pikaard C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 26
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera Y., Haag J.R., Ream T., Costa Nunes P., Pontes O., Pikaard C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005, 120:613-622.
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Costa Nunes, P.4    Pontes, O.5    Pikaard, C.S.6
  • 27
    • 85104531590 scopus 로고    scopus 로고
    • RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats
    • Lee T.F., Gurazada S.G., Zhai J., Li S., Simon S.A., Matzke M.A., Chen X., Meyers B.C. RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. RNA Biol. 2012, 9:1031.
    • (2012) RNA Biol. , vol.9 , pp. 1031
    • Lee, T.F.1    Gurazada, S.G.2    Zhai, J.3    Li, S.4    Simon, S.A.5    Matzke, M.A.6    Chen, X.7    Meyers, B.C.8
  • 28
    • 0025286261 scopus 로고
    • A novel mediator between activator proteins and the RNA polymerase II transcription apparatus
    • Kelleher R.J., Flanagan P.M., Kornberg R.D. A novel mediator between activator proteins and the RNA polymerase II transcription apparatus. Cell 1990, 61:1209-1215.
    • (1990) Cell , vol.61 , pp. 1209-1215
    • Kelleher, R.J.1    Flanagan, P.M.2    Kornberg, R.D.3
  • 29
    • 34249826038 scopus 로고    scopus 로고
    • Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit
    • Backstrom S., Elfving N., Nilsson R., Wingsle G., Bjorklund S. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Mol. Cell 2007, 26:717-729.
    • (2007) Mol. Cell , vol.26 , pp. 717-729
    • Backstrom, S.1    Elfving, N.2    Nilsson, R.3    Wingsle, G.4    Bjorklund, S.5
  • 30
    • 66449127955 scopus 로고    scopus 로고
    • HISTONE MONOUBIQUITINATION1 interacts with a subunit of the mediator complex and regulates defense against necrotrophic fungal pathogens in Arabidopsis
    • Dhawan R., Luo H., Foerster A.M., Abuqamar S., Du H.N., Briggs S.D., Mittelsten Scheid O., Mengiste T. HISTONE MONOUBIQUITINATION1 interacts with a subunit of the mediator complex and regulates defense against necrotrophic fungal pathogens in Arabidopsis. Plant Cell 2009, 21:1000-1019.
    • (2009) Plant Cell , vol.21 , pp. 1000-1019
    • Dhawan, R.1    Luo, H.2    Foerster, A.M.3    Abuqamar, S.4    Du, H.N.5    Briggs, S.D.6    Mittelsten Scheid, O.7    Mengiste, T.8
  • 31
    • 70349682858 scopus 로고    scopus 로고
    • The mediator complex subunit PFT1 is a key regulator of jasmonate-dependent defense in Arabidopsis
    • Kidd B.N., Edgar C.I., Kumar K.K., Aitken E.A., Schenk P.M., Manners J.M., Kazan K. The mediator complex subunit PFT1 is a key regulator of jasmonate-dependent defense in Arabidopsis. Plant Cell 2009, 21:2237-2252.
    • (2009) Plant Cell , vol.21 , pp. 2237-2252
    • Kidd, B.N.1    Edgar, C.I.2    Kumar, K.K.3    Aitken, E.A.4    Schenk, P.M.5    Manners, J.M.6    Kazan, K.7
  • 32
    • 79952281254 scopus 로고    scopus 로고
    • The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana
    • Kim Y.J., Zheng B., Yu Y., Won S.Y., Mo B., Chen X. The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana. EMBO J. 2011, 30:814-822.
    • (2011) EMBO J. , vol.30 , pp. 814-822
    • Kim, Y.J.1    Zheng, B.2    Yu, Y.3    Won, S.Y.4    Mo, B.5    Chen, X.6
  • 33
    • 84877354511 scopus 로고    scopus 로고
    • R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus
    • Sun Q., Csorba T., Skourti-Stathaki K., Proudfoot N.J., Dean C. R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus. Science 2013, 340:619-621.
    • (2013) Science , vol.340 , pp. 619-621
    • Sun, Q.1    Csorba, T.2    Skourti-Stathaki, K.3    Proudfoot, N.J.4    Dean, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.