Regulation of gene expression in plants through miRNA inactivation

PLoS ONE

Volumn 6, Issue 6, 2011, Pages

  Ivashuta, Sergey ^a   Banks, Isaac R ^a   Wiggins, B Elizabeth ^a   Zhang, Yuanji ^a   Ziegler, Todd E ^a   Roberts, James K ^a   Heck, Gregory R ^a  

^a MONSANTO COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; PLANT RNA; TRANSCRIPTOME;

3' UNTRANSLATED REGION; ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; CROP IMPROVEMENT; GENE CASSETTE; GENE EXPRESSION REGULATION; GENE INACTIVATION; GENE REGULATORY NETWORK; GENE TARGETING; GENETIC CODE; GENETIC TRAIT; NONHUMAN; PHENOTYPIC VARIATION; PHYTOCHEMISTRY; PLANT DEVELOPMENT; PLANT GENETICS; RNA SEQUENCE; RNA SPLICING; TRANSGENICS; BIOLOGY; DNA BASE COMPOSITION; GENE SILENCING; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; TRANSGENIC PLANT;

ARABIDOPSIS; EUKARYOTA; INVERTEBRATA;

ARABIDOPSIS; BASE COMPOSITION; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; MICRORNAS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; RNA, PLANT;

EID: 79959570681     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021330     Document Type: Article

References (29)

1. Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
2. Jones-Rhoades MW, Bartel DP, Bartel B, (2006) MicroRNAS and their regulatory roles in plants. Annu Rev Plant Biol 57: 19-53.
3. Shukla LI, Chinnusamy V, Sunkar R, (2008) The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim Biophys Acta 1779: 743-748.
4. Alves L Jr, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T, (2009) Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Res 37: 4010-4021.
5. Llave C, Xie Z, Kasschau KD, Carrington JC, (2002) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
6. Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, et al. (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320: 1185-1190.
7. Axtell MJ, Jan C, Rajagopalan R, Bartel DP, (2006) A two-hit trigger for siRNA biogenesis in plants. Cell 127: 565-577.
8. Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, et al. (2007) Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 39: 1033-1037.
9. Ebert MS, Neilson JR, Sharp PA, (2007) MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells. Nat Methods 4: 721-726.
10. Ebert MS, Sharp PA, (2010) MicroRNA sponges: progress and possibilities. RNA 16: 2043-2050.
11. Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D, (2010) A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genet 6: e1001031-.
12. Gu S, Jin L, Zhang F, Sarnow P, Kay MA, (2009) Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs. Nat Struct Mol Biol 16: 144-150.
13. Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, (2002) MicroRNAs in plants. Genes Dev 16: 1616-1626.
14. Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, et al. (2002) Prediction of plant microRNA targets. Cell 110: 513-520.
15. Mullen JL, Weinig C, Hangarter RP, (2006) Shade avoidance and the regulation of leaf inclination in Arabidopsis. Plant Cell Environ 29: 1099-1106.
16. Vandenbussche F, Vriezen WH, Smalle J, Laarhoven LJ, Harren FJ, et al. (2003) Ethylene and auxin control the Arabidopsis response to decreased light intensity. Plant Physiol 133: 517-527.
17. Griffiths-Jones S, Saini HK, van DS, Enright AJ, (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res 36: D154-D158.
18. James C, (2003) Global review of commercialized transgenic crops. Curr Sci 84: 300-309.
19. Sire C, Moreno AB, Garcia-Chapa M, Lopez-Moya JJ, San SB, (2009) Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. FEBS Lett 583: 1039-1044.
20. Clough SJ, Bent AF, (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
21. Murashige T, Skoog F, (1962) A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures. Physiol Plant 15: 473-497.
22. Sambrook J, Russell DW, (2001) Molecular Cloning.
23. Conlon HE, Salter MG, (2007) Plant protein extraction. Methods Mol Biol 362: 379-383.
24. Towbin H, Staehelin T, Gordon J, (1992) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. 1979. Biotechnology 24: 145-149.
25. Jefferson RA, Kavanagh TA, Bevan MW, (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907.
26. Dunnett CW, (1955) A Multiple Comparisons Procedure for Comparing Several Treatments with a Control. Journal of the American Statistical Association 50: 1096-1121.
27. Hinkelmann K, Kempthorne O, (1994) Design and Analysis of Experiments (Volume I): Introduction to Experimental Design.
28. Allen E, Xie Z, Gustafson AM, Carrington JC, (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
29. Pearson WR, (2000) Flexible sequence similarity searching with the FASTA3 program package. Methods Mol Biol 132: 185-219.