-
1
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
Argaman, L., Hershberg, R., Vogel, J., Bejerano, G., Wagner, E.G., Margalit, H., and Altuvia, S. 2001. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr. Biol. 11: 941-950.
-
(2001)
Curr. Biol.
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
Altuvia, S.7
-
2
-
-
0038011596
-
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays
-
(this issue)
-
Bono, H., Yagi, K., Kasukawa, T., Nikaido, I., Tominaga, N., Miki, R., Mizuno, Y., Tomaru, Y., Goto, H., Nitanda, H., et al. 2003. Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays. Genome Res. (this issue).
-
(2003)
Genome Res.
-
-
Bono, H.1
Yagi, K.2
Kasukawa, T.3
Nikaido, I.4
Tominaga, N.5
Miki, R.6
Mizuno, Y.7
Tomaru, Y.8
Goto, H.9
Nitanda, H.10
-
3
-
-
0031922811
-
Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding
-
Bortolin, M.L. and Kiss. T. 1998. Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding. RNA 4: 445-454.
-
(1998)
RNA
, vol.4
, pp. 445-454
-
-
Bortolin, M.L.1
Kiss, T.2
-
4
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge, C. and Karlin, S. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268: 78-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
5
-
-
85047696885
-
Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes
-
Chan, A.S., Thorner, P.S., Squire, J.A., and Zielenska, M. 2002. Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes. Oncogene 21: 3029-3037.
-
(2002)
Oncogene
, vol.21
, pp. 3029-3037
-
-
Chan, A.S.1
Thorner, P.S.2
Squire, J.A.3
Zielenska, M.4
-
6
-
-
0037133945
-
Computational genomics of noncoding RNA genes
-
Eddy, S.R. 2002. Computational genomics of noncoding RNA genes. Cell 109: 137-140.
-
(2002)
Cell
, vol.109
, pp. 137-140
-
-
Eddy, S.R.1
-
7
-
-
0033954323
-
Non-coding, mRNA-like RNAs database Y2K
-
Erdmann, V.A., Szymanski, M., Hochberg, A., Groot, N., and Barciszewski, J. 2000. Non-coding, mRNA-like RNAs database Y2K. Nucleic Acids Res. 28: 197-200.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 197-200
-
-
Erdmann, V.A.1
Szymanski, M.2
Hochberg, A.3
Groot, N.4
Barciszewski, J.5
-
8
-
-
0034958516
-
Regulatory RNAs
-
Erdmann, V.A., Barciszewska, M.Z., Hochberg, A., de Groot, N., and Barciszewski, J. 2001. Regulatory RNAs. Cell. Mol. Life Sci. 58: 960-977.
-
(2001)
Cell. Mol. Life Sci.
, vol.58
, pp. 960-977
-
-
Erdmann, V.A.1
Barciszewska, M.Z.2
Hochberg, A.3
de Groot, N.4
Barciszewski, J.5
-
9
-
-
0035842579
-
Ntab, a novel non-coding RNA abundantly expressed in rat brain
-
French, P.J., Bliss, T.V., and O'Connor, V. 2001. Ntab, a novel non-coding RNA abundantly expressed in rat brain. Neuroscience 108: 207-215.
-
(2001)
Neuroscience
, vol.108
, pp. 207-215
-
-
French, P.J.1
Bliss, T.V.2
O'Connor, V.3
-
10
-
-
0023216891
-
CpG islands in vertebrate genomes
-
Gardiner-Garden, M. and Frommer, M. 1987. CpG islands in vertebrate genomes. J. Mol. Biol. 196: 261-282.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 261-282
-
-
Gardiner-Garden, M.1
Frommer, M.2
-
11
-
-
0038349576
-
The mouse secretome: Functional classification of the proteins secreted into the extracellular environment
-
(this issue)
-
Grimmond, S.M., Miranda, K.C., Yuan, Z., Davis, M.J., Hume, D.A., Yagi, K., Tominaga, N., Bono, H., Hayashizaki, Y., Okazaki, Y., et al. 2003. The mouse secretome: Functional classification of the proteins secreted into the extracellular environment. Genome Res. (this issue).
-
(2003)
Genome Res.
-
-
Grimmond, S.M.1
Miranda, K.C.2
Yuan, Z.3
Davis, M.J.4
Hume, D.A.5
Yagi, K.6
Tominaga, N.7
Bono, H.8
Hayashizaki, Y.9
Okazaki, Y.10
-
12
-
-
0037033801
-
Micro-RNAs: Small is plentiful
-
Grosshans, H. and Slack, F.J. 2002. Micro-RNAs: Small is plentiful. J. Cell. Biol. 156: 17-21.
-
(2002)
J. Cell. Biol.
, vol.156
, pp. 17-21
-
-
Grosshans, H.1
Slack, F.J.2
-
13
-
-
0034866588
-
Identification of a new imprinted gene, Rian, on mouse chromosome 12 by fluorescent differential display screening
-
Hatada, I., Morita, S., Obata, Y., Sotomaru, Y., Shimoda, M., and Kono, T. 2001. Identification of a new imprinted gene, Rian, on mouse chromosome 12 by fluorescent differential display screening. J. Biochem. (Tokyo) 130: 187-190.
-
(2001)
J. Biochem. (Tokyo)
, vol.130
, pp. 187-190
-
-
Hatada, I.1
Morita, S.2
Obata, Y.3
Sotomaru, Y.4
Shimoda, M.5
Kono, T.6
-
14
-
-
0038011488
-
A comprehensive transcript map of the mouse Gnas imprinted complex
-
RIKEN GER Group and GSL Members, and (this issue)
-
Holmes, R., Williamson, C., Peters, J., Denny, P., RIKEN GER Group and GSL Members, and Wells, C. 2003. A comprehensive transcript map of the mouse Gnas imprinted complex. Genome Res. 13: (this issue).
-
(2003)
Genome Res.
, vol.13
-
-
Holmes, R.1
Williamson, C.2
Peters, J.3
Denny, P.4
Wells, C.5
-
15
-
-
0033535935
-
A new structure for the murine Xist gene and its relationship to chromosome choice/counting during X-chromosome inactivation
-
Hong, Y.K., Ontiveros, S.D., Chen, C., and Strauss, W.M. 1999. A new structure for the murine Xist gene and its relationship to chromosome choice/counting during X-chromosome inactivation. Proc. Natl. Acad. Sci. 96: 6829-6834.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 6829-6834
-
-
Hong, Y.K.1
Ontiveros, S.D.2
Chen, C.3
Strauss, W.M.4
-
16
-
-
0033118192
-
Molecular evolutionary evidence that H19 mRNA is functional
-
Hurst, L.D. and Smith, N.G. 1999. Molecular evolutionary evidence that H19 mRNA is functional. Trends Genet. 15: 134-135.
-
(1999)
Trends Genet.
, vol.15
, pp. 134-135
-
-
Hurst, L.D.1
Smith, N.G.2
-
17
-
-
0036482846
-
Identification of a novel osteoblastic gene, inducible by C-type natriuretic peptide, whose transcript might function in mineralization as a noncoding RNA
-
Inoue, A., Kobayashi, Y., Ishizuka, M., Hirose, S., and Hagiwara, H. 2002. Identification of a novel osteoblastic gene, inducible by C-type natriuretic peptide, whose transcript might function in mineralization as a noncoding RNA. Calcif. Tissue Int. 70: 111-116.
-
(2002)
Calcif. Tissue Int.
, vol.70
, pp. 111-116
-
-
Inoue, A.1
Kobayashi, Y.2
Ishizuka, M.3
Hirose, S.4
Hagiwara, H.5
-
18
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
RIKEN GER Group and GSL Members, and (this issue)
-
Kiyosawa, H., Yamanaka, I., Osato, N., RIKEN GER Group and GSL Members, and Hayashizaki, Y. 2003. Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res. 13: (this issue).
-
(2003)
Genome Res.
, vol.13
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Hayashizaki, Y.4
-
19
-
-
0033577909
-
Identification and characterization of G90, a novel mouse RNA that lacks an extensive open reading frame
-
Krause, R., Hemberger, M., Himmelbauer, H., Kalscheuer, V., and Fundele, R.H. 1999. Identification and characterization of G90, a novel mouse RNA that lacks an extensive open reading frame. Gene 232: 35-42.
-
(1999)
Gene
, vol.232
, pp. 35-42
-
-
Krause, R.1
Hemberger, M.2
Himmelbauer, H.3
Kalscheuer, V.4
Fundele, R.H.5
-
20
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau, N.C., Lim, L.P., Weinstein, E.G., and Bartel, D.P. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
21
-
-
0031568254
-
The human NTT gene: Identification of a novel 17-kb noncoding nuclear RNA expressed in activated CD4+ T cells
-
Liu, A.Y., Torchia, B.S., Migeon, B.R., and Siliciano, R.F. 1997. The human NTT gene: Identification of a novel 17-kb noncoding nuclear RNA expressed in activated CD4+ T cells. Genomics 39: 171-184.
-
(1997)
Genomics
, vol.39
, pp. 171-184
-
-
Liu, A.Y.1
Torchia, B.S.2
Migeon, B.R.3
Siliciano, R.F.4
-
22
-
-
0035198739
-
Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs
-
Maclntosh, G.C., Wilkerson, C., and Green, P.J. 2001. Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs. Plant Physiol. 127: 765-776.
-
(2001)
Plant Physiol.
, vol.127
, pp. 765-776
-
-
Maclntosh, G.C.1
Wilkerson, C.2
Green, P.J.3
-
23
-
-
18644380021
-
Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles
-
Muddashetty, R., Khanam, T., Kondrashov, A., Bundman, M., Iacoangeli, A., Kremerskothen, J., Duning, K., Barnekow, A., Huttenhofer, A., Tiedge, H., et al. 2002. Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J. Mol. Biol. 321: 433-445.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 433-445
-
-
Muddashetty, R.1
Khanam, T.2
Kondrashov, A.3
Bundman, M.4
Iacoangeli, A.5
Kremerskothen, J.6
Duning, K.7
Barnekow, A.8
Huttenhofer, A.9
Tiedge, H.10
-
24
-
-
17744388101
-
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence
-
Nesterova, T.B., Slobodyanyuk, S.Y., Elisaphenko, E.A., Shevchenko, A.I., Johnston, C., Pavlova, M.E., Rogozin, I.B., Kolesnikov, N.N., Brockdorff, N., and Zakian, S.M. 2001. Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Genome Res. 11: 833-849.
-
(2001)
Genome Res.
, vol.11
, pp. 833-849
-
-
Nesterova, T.B.1
Slobodyanyuk, S.Y.2
Elisaphenko, E.A.3
Shevchenko, A.I.4
Johnston, C.5
Pavlova, M.E.6
Rogozin, I.B.7
Kolesnikov, N.N.8
Brockdorff, N.9
Zakian, S.M.10
-
25
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
Okazaki, Y., Furuno M., Kasukawa T., Adachi J., Bono H., Kondo S., Nikaido I., Osato N., Saito R., Suzuki, H., et al. 2002. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420: 563-573.
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
Adachi, J.4
Bono, H.5
Kondo, S.6
Nikaido, I.7
Osato, N.8
Saito, R.9
Suzuki, H.10
-
26
-
-
0025950944
-
Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
-
Pearson, W.R. 1991. Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics 11: 635-650.
-
(1991)
Genomics
, vol.11
, pp. 635-650
-
-
Pearson, W.R.1
-
27
-
-
0031878107
-
The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5′-terminal oligopyrimidine gene family
-
Pelczar, P. and Filipowicz, W. 1998. The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5′-terminal oligopyrimidine gene family. Mol. Cell. Biol. 18: 4509-4518.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 4509-4518
-
-
Pelczar, P.1
Filipowicz, W.2
-
28
-
-
0035806973
-
Computational identification of noncoding RNAs in E. coli by comparative genomics
-
Rivas, E., Klein, R.J., Jones, T.A., and Eddy, S.R. 2001. Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr. Biol. 11: 1369-1373.
-
(2001)
Curr. Biol.
, vol.11
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.J.2
Jones, T.A.3
Eddy, S.R.4
-
29
-
-
0035281741
-
RNA interference: 2001
-
Sharp, P.A. 2001. RNA interference: 2001. Genes & Dev. 15: 485-490.
-
(2001)
Genes & Dev.
, vol.15
, pp. 485-490
-
-
Sharp, P.A.1
-
30
-
-
0037075032
-
The non-coding Air RNA is required for silencing autosomal imprinted genes
-
Sleutels, F., Zwart, R., and Barlow, D.P. 2002. The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415: 810-813.
-
(2002)
Nature
, vol.415
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
31
-
-
0033529207
-
A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome
-
Smilinich, N.J., Day, C.D., Fitzpatrick, G.V., Caldwell, G.M., Lossie, A.C., Cooper, P.R., Smallwood, A.C., Joyce, J.A., Schofield, P.N., Reik, W., et al. 1999. A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome. Proc. Natl. Acad. Sci. 96: 8064-8069.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 8064-8069
-
-
Smilinich, N.J.1
Day, C.D.2
Fitzpatrick, G.V.3
Caldwell, G.M.4
Lossie, A.C.5
Cooper, P.R.6
Smallwood, A.C.7
Joyce, J.A.8
Schofield, P.N.9
Reik, W.10
-
32
-
-
0031756336
-
Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5′-terminal oligopyrimidine gene family reveals common features of snoRNA host genes
-
Smith, C.M. and Steitz, J.A. 1998. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5′-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. Mol. Cell. Biol. 18: 6897-6909.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6897-6909
-
-
Smith, C.M.1
Steitz, J.A.2
-
33
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz, G. 2002. An expanding universe of noncoding RNAs. Science 296: 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
34
-
-
0029975533
-
Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome
-
Sutherland, H.F., Wadey, R., McKie, J.M., Taylor, C., Atif, U., Johnstone, K.A., Halford, S., Kim, U.J., Goodship, J., Baldini, A., et al. 1996. Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome. Am. J. Hum. Genet. 59: 23-31.
-
(1996)
Am. J. Hum. Genet.
, vol.59
, pp. 23-31
-
-
Sutherland, H.F.1
Wadey, R.2
McKie, J.M.3
Taylor, C.4
Atif, U.5
Johnstone, K.A.6
Halford, S.7
Kim, U.J.8
Goodship, J.9
Baldini, A.10
-
35
-
-
0037133565
-
Comprehensive analysis of CpG islands in human chromosomes 21 and 22
-
Takai, D. and Jones, P.A. 2002. Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc. Natl. Acad. Sci. 99: 3740-3745.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 3740-3745
-
-
Takai, D.1
Jones, P.A.2
-
36
-
-
0035934228
-
Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA
-
Tam, W. 2001. Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA. Gene 274: 157-167.
-
(2001)
Gene
, vol.274
, pp. 157-167
-
-
Tam, W.1
-
37
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
Tang, T.H., Bachellerie, J.P., Rozhdestvensky, T., Bortolin, M.L., Huber, H., Drungowski, M., Elge, T., Brosius, J., and Huttenhofer, A. 2002. Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc. Natl. Acad. Sci. 99: 7536-7541.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 7536-7541
-
-
Tang, T.H.1
Bachellerie, J.P.2
Rozhdestvensky, T.3
Bortolin, M.L.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Huttenhofer, A.9
-
38
-
-
0030033546
-
A mammalian gene with introns instead of exons generating stable RNA products
-
Tycowski, K.T., Shu, M.D., and Steitz, J.A. 1996. A mammalian gene with introns instead of exons generating stable RNA products. Nature 379: 464-466.
-
(1996)
Nature
, vol.379
, pp. 464-466
-
-
Tycowski, K.T.1
Shu, M.D.2
Steitz, J.A.3
-
39
-
-
0028104848
-
A novel synapse-associated noncoding RNA
-
Velleca, M.A., Wallace, M.C., and Merlie, J.P. 1994. A novel synapse-associated noncoding RNA. Mol. Cell. Biol. 14: 7095-7104.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 7095-7104
-
-
Velleca, M.A.1
Wallace, M.C.2
Merlie, J.P.3
-
40
-
-
0030586773
-
adapt33, a novel oxidant-inducible RNA from hamster HA-1 cells
-
Wang, Y., Crawford, D.R., and Davies, K.J. 1996. adapt33, a novel oxidant-inducible RNA from hamster HA-1 cells. Arch Biochem. Biophys. 332: 255-260.
-
(1996)
Arch. Biochem. Biophys.
, vol.332
, pp. 255-260
-
-
Wang, Y.1
Crawford, D.R.2
Davies, K.J.3
-
41
-
-
0037133946
-
Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
-
Wassarman, K.M. 2002. Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes. Cell 109: 141-144.
-
(2002)
Cell
, vol.109
, pp. 141-144
-
-
Wassarman, K.M.1
-
42
-
-
0037133946
-
Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
-
Wassarman, K.M., Repoila, F., Rosenow, C., Storz, G., and Gottesman, S. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes & Dev. 15: 1637-1651.
-
(2002)
Cell
, vol.109
, pp. 141-144
-
-
Wassarman, K.M.1
-
43
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
Wassarman, K.M., Repoila, F., Rosenow, C., Storz, G., and Gottesman, S. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes & Dev. 15: 1637-1651.
-
(2001)
Genes & Dev.
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
44
-
-
0031040496
-
An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene
-
Wevrick, R. and Francke, U. 1997. An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene. Hum. Mol. Genet. 6: 325-332.
-
(1997)
Hum. Mol. Genet.
, vol.6
, pp. 325-332
-
-
Wevrick, R.1
Francke, U.2
|