-
1
-
-
61349185031
-
Two rice phosphate transporters, OsPht1; 2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
-
Ai, P., Sun, S., Zhao, J., Fan, X., Xin, W., Guo, Q., Yu, L., Shen, Q., Wu, P., Miller, A.J., and Xu, G. (2009). Two rice phosphate transporters, OsPht1; 2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation. Plant J. 57: 798-809.
-
(2009)
Plant J.
, vol.57
, pp. 798-809
-
-
Ai, P.1
Sun, S.2
Zhao, J.3
Fan, X.4
Xin, W.5
Guo, Q.6
Yu, L.7
Shen, Q.8
Wu, P.9
Miller, A.J.10
Xu, G.11
-
2
-
-
0343879238
-
Assay of inorganic phosphate, total phosphate and phosphatases
-
Ames, B. (1966). Assay of inorganic phosphate, total phosphate and phosphatases. Methods Enzymol. 8: 115-118.
-
(1966)
Methods Enzymol.
, vol.8
, pp. 115-118
-
-
Ames, B.1
-
3
-
-
84864450616
-
Functional expression of PHO1 to the Golgi and trans-Golgi network and its role in export of inorganic phosphate
-
Arpat, A.B., Magliano, P., Wege, S., Rouached, H., Stefanovic, A., and Poirier, Y. (2012). Functional expression of PHO1 to the Golgi and trans-Golgi network and its role in export of inorganic phosphate. Plant J. 71: 479-491.
-
(2012)
Plant J.
, vol.71
, pp. 479-491
-
-
Arpat, A.B.1
Magliano, P.2
Wege, S.3
Rouached, H.4
Stefanovic, A.5
Poirier, Y.6
-
4
-
-
33745963372
-
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene
-
Aung, K., Lin, S.I., Wu, C.C., Huang, Y.T., Su, C.L., and Chiou, T.J. (2006). pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol. 141: 1000-1011.
-
(2006)
Plant Physiol.
, vol.141
, pp. 1000-1011
-
-
Aung, K.1
Lin, S.I.2
Wu, C.C.3
Huang, Y.T.4
Su, C.L.5
Chiou, T.J.6
-
5
-
-
33745960196
-
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
-
Bari, R., Datt Pant, B., Stitt, M., and Scheible, W.R. (2006). PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141: 988-999.
-
(2006)
Plant Physiol.
, vol.141
, pp. 988-999
-
-
Bari, R.1
Datt Pant, B.2
Stitt, M.3
Scheible, W.R.4
-
6
-
-
84881256237
-
Arabidopsis ferritin 1 (AtFer1) gene regulation by the phosphate starvation response 1 (AtPHR1) transcription factor reveals a direct molecular link between iron and phosphate homeostasis
-
Bournier, M., Tissot, N., Mari, S., Boucherez, J., Lacombe, E., Briat, J.F., and Gaymard, F. (2013). Arabidopsis ferritin 1 (AtFer1) gene regulation by the phosphate starvation response 1 (AtPHR1) transcription factor reveals a direct molecular link between iron and phosphate homeostasis. J. Biol. Chem. 288: 22670-22680.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 22670-22680
-
-
Bournier, M.1
Tissot, N.2
Mari, S.3
Boucherez, J.4
Lacombe, E.5
Briat, J.F.6
Gaymard, F.7
-
7
-
-
78049446272
-
A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis
-
Bustos, R., Castrillo, G., Linhares, F., Puga, M.I., Rubio, V., Pérez-Pérez, J., Solano, R., Leyva, A., and Paz-Ares, J. (2010). A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis. PLoS Genet. 6: e1001102.
-
(2010)
PLoS Genet.
, vol.6
-
-
Bustos, R.1
Castrillo, G.2
Linhares, F.3
Puga, M.I.4
Rubio, V.5
Pérez-Pérez, J.6
Solano, R.7
Leyva, A.8
Paz-Ares, J.9
-
8
-
-
79957605879
-
Characterization of the Arabidopsis glycerophosphodiester phosphodiesterase (GDPD) family reveals a role of the plastid-localized AtGDPD1 in maintaining cellular phosphate homeostasis under phosphate starvation
-
Cheng, Y., Zhou, W., El Sheery, N.I., Peters, C., Li, M., Wang, X., and Huang, J. (2011). Characterization of the Arabidopsis glycerophosphodiester phosphodiesterase (GDPD) family reveals a role of the plastid-localized AtGDPD1 in maintaining cellular phosphate homeostasis under phosphate starvation. Plant J. 66: 781-795.
-
(2011)
Plant J.
, vol.66
, pp. 781-795
-
-
Cheng, Y.1
Zhou, W.2
El Sheery, N.I.3
Peters, C.4
Li, M.5
Wang, X.6
Huang, J.7
-
9
-
-
33846574715
-
The role of microRNAs in sensing nutrient stress
-
Chiou, T.J. (2007). The role of microRNAs in sensing nutrient stress. Plant Cell Environ. 30: 323-332.
-
(2007)
Plant Cell Environ.
, vol.30
, pp. 323-332
-
-
Chiou, T.J.1
-
10
-
-
33745270651
-
Regulation of phosphate homeostasis by microRNA in Arabidopsis
-
Chiou, T.J., Aung, K., Lin, S.I., Wu, C.C., Chiang, S.F., and Su, C.L. (2006). Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 18: 412-421.
-
(2006)
Plant Cell
, vol.18
, pp. 412-421
-
-
Chiou, T.J.1
Aung, K.2
Lin, S.I.3
Wu, C.C.4
Chiang, S.F.5
Su, C.L.6
-
11
-
-
79955612432
-
Signaling network in sensing phosphate availability in plants
-
Chiou, T.J., and Lin, S.I. (2011). Signaling network in sensing phosphate availability in plants. Annu. Rev. Plant Biol. 62: 185-206.
-
(2011)
Annu. Rev. Plant Biol.
, vol.62
, pp. 185-206
-
-
Chiou, T.J.1
Lin, S.I.2
-
12
-
-
0037002169
-
Phytochelatins and metallothioneins: Roles in heavy metal detoxification and homeostasis
-
Cobbett, C., and Goldsbrough, P. (2002). Phytochelatins and metallothioneins: Roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 53: 159-182.
-
(2002)
Annu. Rev. Plant Biol.
, vol.53
, pp. 159-182
-
-
Cobbett, C.1
Goldsbrough, P.2
-
13
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla, J.M., Valli, A., Todesco, M., Mateos, I., Puga, M.I., Rubio-Somoza, I., Leyva, A., Weigel, D., García, J.A., and Paz-Ares, J. (2007). Target mimicry provides a new mechanism for regulation of microRNA activity. Nat. Genet. 39: 1033-1037.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
Leyva, A.7
Weigel, D.8
García, J.A.9
Paz-Ares, J.10
-
14
-
-
27844526222
-
A miRNA involved in phosphate-starvation response in Arabidopsis
-
Fujii, H., Chiou, T.J., Lin, S.I., Aung, K., and Zhu, J.K. (2005). A miRNA involved in phosphate-starvation response in Arabidopsis. Curr. Biol. 15: 2038-2043.
-
(2005)
Curr. Biol.
, vol.15
, pp. 2038-2043
-
-
Fujii, H.1
Chiou, T.J.2
Lin, S.I.3
Aung, K.4
Zhu, J.K.5
-
15
-
-
67849114241
-
miRanalyzer: A microRNA detection and analysis tool for next-generation sequencing experiments
-
Hackenberg, M., Sturm, M., Langenberger, D., Falcón-Pérez, J.M., and Aransay, A.M. (2009). miRanalyzer: A microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 37 (Web Server issue): W68-76.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcón-Pérez, J.M.4
Aransay, A.M.5
-
16
-
-
33751257493
-
Phosphate deficiency promotes modification of iron distribution in Arabidopsis plants
-
Hirsch, J., Marin, E., Floriani, M., Chiarenza, S., Richaud, P., Nussaume, L., and Thibaud, M.C. (2006). Phosphate deficiency promotes modification of iron distribution in Arabidopsis plants. Biochimie 88: 1767-1771.
-
(2006)
Biochimie
, vol.88
, pp. 1767-1771
-
-
Hirsch, J.1
Marin, E.2
Floriani, M.3
Chiarenza, S.4
Richaud, P.5
Nussaume, L.6
Thibaud, M.C.7
-
17
-
-
14744278503
-
Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones
-
Hou, X.L., Wu, P., Jiao, F.C., Jia, Q.J., Chen, H.M., Yu, J., Song, X.W., and Yi, K.K. (2005). Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones. Plant Cell Environ. 28: 353-364.
-
(2005)
Plant Cell Environ.
, vol.28
, pp. 353-364
-
-
Hou, X.L.1
Wu, P.2
Jiao, F.C.3
Jia, Q.J.4
Chen, H.M.5
Yu, J.6
Song, X.W.7
Yi, K.K.8
-
18
-
-
71049136041
-
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
-
Hsieh, L.C., Lin, S.I., Shih, A.C., Chen, J.W., Lin, W.Y., Tseng, C.Y., Li, W.H., and Chiou, T.J. (2009). Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol. 151: 2120-2132.
-
(2009)
Plant Physiol.
, vol.151
, pp. 2120-2132
-
-
Hsieh, L.C.1
Lin, S.I.2
Shih, A.C.3
Chen, J.W.4
Lin, W.Y.5
Tseng, C.Y.6
Li, W.H.7
Chiou, T.J.8
-
19
-
-
79959988694
-
LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice
-
Hu, B., Zhu, C., Li, F., Tang, J., Wang, Y., Lin, A., Liu, L., Che, R., and Chu, C. (2011). LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice. Plant Physiol. 156: 1101-1115.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1101-1115
-
-
Hu, B.1
Zhu, C.2
Li, F.3
Tang, J.4
Wang, Y.5
Lin, A.6
Liu, L.7
Che, R.8
Chu, C.9
-
20
-
-
84888406718
-
A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness
-
Jabnoune, M., Secco, D., Lecampion, C., Robaglia, C., Shu, Q., and Poirier, Y. (2013). A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness. Plant Cell 25: 4166-4182.
-
(2013)
Plant Cell
, vol.25
, pp. 4166-4182
-
-
Jabnoune, M.1
Secco, D.2
Lecampion, C.3
Robaglia, C.4
Shu, Q.5
Poirier, Y.6
-
21
-
-
84866429390
-
Transcriptional regulation of phosphate acquisition by higher plants
-
Jain, A., Nagarajan, V.K., and Raghothama, K.G. (2012). Transcriptional regulation of phosphate acquisition by higher plants. Cell. Mol. Life Sci. 69: 3207-3224.
-
(2012)
Cell. Mol. Life Sci.
, vol.69
, pp. 3207-3224
-
-
Jain, A.1
Nagarajan, V.K.2
Raghothama, K.G.3
-
22
-
-
84863012576
-
Massive analysis of rice small RNAs: Mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
-
Jeong, D.H., Park, S., Zhai, J., Gurazada, S.G., De Paoli, E., Meyers, B.C., and Green, P.J. (2011). Massive analysis of rice small RNAs: Mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 23: 4185-4207.
-
(2011)
Plant Cell
, vol.23
, pp. 4185-4207
-
-
Jeong, D.H.1
Park, S.2
Zhai, J.3
Gurazada, S.G.4
De Paoli, E.5
Meyers, B.C.6
Green, P.J.7
-
23
-
-
79959992008
-
The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice
-
Jia, H., Ren, H., Gu, M., Zhao, J., Sun, S., Zhang, X., Chen, J., Wu, P., and Xu, G. (2011). The phosphate transporter gene OsPht1;8 is involved in phosphate homeostasis in rice. Plant Physiol. 156: 1164-1175.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1164-1175
-
-
Jia, H.1
Ren, H.2
Gu, M.3
Zhao, J.4
Sun, S.5
Zhang, X.6
Chen, J.7
Wu, P.8
Xu, G.9
-
24
-
-
37249083962
-
Phosphate starvation root architecture and anthocyanin accumulation responses are modulated by the gibberellin-DELLA signaling pathway in Arabidopsis
-
Jiang, C.F., Gao, X.H., Liao, L., Harberd, N.P., and Fu, X.D. (2007). Phosphate starvation root architecture and anthocyanin accumulation responses are modulated by the gibberellin-DELLA signaling pathway in Arabidopsis. Plant Physiol. 145: 1460-1470.
-
(2007)
Plant Physiol.
, vol.145
, pp. 1460-1470
-
-
Jiang, C.F.1
Gao, X.H.2
Liao, L.3
Harberd, N.P.4
Fu, X.D.5
-
25
-
-
79953731376
-
Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in Arabidopsis
-
Kant, S., Peng, M., and Rothstein, S.J. (2011). Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in Arabidopsis. PLoS Genet. 7: e1002021.
-
(2011)
PLoS Genet.
, vol.7
-
-
Kant, S.1
Peng, M.2
Rothstein, S.J.3
-
26
-
-
84875134412
-
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
-
Kawahara, Y., et al. (2013). Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 6: 4.
-
(2013)
Rice
, vol.6
, pp. 4
-
-
Kawahara, Y.1
-
27
-
-
58349098168
-
Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation
-
Kobayashi, K., Awai, K., Nakamura, M., Nagatani, A., Masuda, T., and Ohta, H. (2009). Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation. Plant J. 57: 322-331.
-
(2009)
Plant J.
, vol.57
, pp. 322-331
-
-
Kobayashi, K.1
Awai, K.2
Nakamura, M.3
Nagatani, A.4
Masuda, T.5
Ohta, H.6
-
28
-
-
79959950238
-
The role of microRNAs in phosphorus deficiency signaling
-
Kuo, H.F., and Chiou, T.J. (2011). The role of microRNAs in phosphorus deficiency signaling. Plant Physiol. 156: 1016-1024.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1016-1024
-
-
Kuo, H.F.1
Chiou, T.J.2
-
29
-
-
58049216575
-
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
-
Lacombe, S., et al. (2008). Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice. BMC Plant Biol. 8: 123.
-
(2008)
BMC Plant Biol.
, vol.8
, pp. 123
-
-
Lacombe, S.1
-
30
-
-
79959921519
-
Genetic and genomic evidence that sucrose is a global regulator of plant responses to phosphate starvation in Arabidopsis
-
Lei, M.G., Liu, Y.D., Zhang, B.C., Zhao, Y.T., Wang, X.J., Zhou, Y.H., Raghothama, K.G., and Liu, D. (2011). Genetic and genomic evidence that sucrose is a global regulator of plant responses to phosphate starvation in Arabidopsis. Plant Physiol. 156: 1116-1130.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1116-1130
-
-
Lei, M.G.1
Liu, Y.D.2
Zhang, B.C.3
Zhao, Y.T.4
Wang, X.J.5
Zhou, Y.H.6
Raghothama, K.G.7
Liu, D.8
-
31
-
-
38549121882
-
Gramene: A growing plant comparative genomics resource
-
Liang, C.Z., et al. (2008). Gramene: A growing plant comparative genomics resource. Nucleic Acids Res. 36 (Database issue): D947-D953.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Liang, C.Z.1
-
32
-
-
78651338757
-
Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation
-
Lin, S.I., et al. (2010). Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation. Plant Cell Physiol. 51: 2119-2131.
-
(2010)
Plant Cell Physiol.
, vol.51
, pp. 2119-2131
-
-
Lin, S.I.1
-
33
-
-
84877049199
-
Novel miRNAs in the control of arsenite levels in rice
-
Liu, Q.P. (2012). Novel miRNAs in the control of arsenite levels in rice. Funct. Integr. Genomics 12: 649-658.
-
(2012)
Funct. Integr. Genomics
, vol.12
, pp. 649-658
-
-
Liu, Q.P.1
-
34
-
-
84863103592
-
PHO2-dependent degradation of PHO1 modulates phosphate homeostasis in Arabidopsis
-
Liu, T.Y., Huang, T.K., Tseng, C.Y., Lai, Y.S., Lin, S.I., Lin, W.Y., Chen, J.W., and Chiou, T.J. (2012). PHO2-dependent degradation of PHO1 modulates phosphate homeostasis in Arabidopsis. Plant Cell 24: 2168-2183.
-
(2012)
Plant Cell
, vol.24
, pp. 2168-2183
-
-
Liu, T.Y.1
Huang, T.K.2
Tseng, C.Y.3
Lai, Y.S.4
Lin, S.I.5
Lin, W.Y.6
Chen, J.W.7
Chiou, T.J.8
-
35
-
-
23844510188
-
A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation
-
Misson, J., et al. (2005). A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proc. Natl. Acad. Sci. USA 102: 11934-11939.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11934-11939
-
-
Misson, J.1
-
36
-
-
21144455484
-
The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses
-
Miura, K., Rus, A., Sharkhuu, A., Yokoi, S., Karthikeyan, A.S., Raghothama, K.G., Baek, D., Koo, Y.D., Jin, J.B., Bressan, R.A., Yun, D.J., and Hasegawa, P.M. (2005). The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses. Proc. Natl. Acad. Sci. USA 102: 7760-7765.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7760-7765
-
-
Miura, K.1
Rus, A.2
Sharkhuu, A.3
Yokoi, S.4
Karthikeyan, A.S.5
Raghothama, K.G.6
Baek, D.7
Koo, Y.D.8
Jin, J.B.9
Bressan, R.A.10
Yun, D.J.11
Hasegawa, P.M.12
-
37
-
-
33845547967
-
Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus
-
Morcuende, R., Bari, R., Gibon, Y., Zheng, W., Pant, B.D., Bläsing, O., Usadel, B., Czechowski, T., Udvardi, M.K., Stitt, M., and Scheible, W.R. (2007). Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ. 30: 85-112.
-
(2007)
Plant Cell Environ.
, vol.30
, pp. 85-112
-
-
Morcuende, R.1
Bari, R.2
Gibon, Y.3
Zheng, W.4
Pant, B.D.5
Bläsing, O.6
Usadel, B.7
Czechowski, T.8
Udvardi, M.K.9
Stitt, M.10
Scheible, W.R.11
-
38
-
-
33846401178
-
Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism
-
Müller, R., Morant, M., Jarmer, H., Nilsson, L., and Nielsen, T.H. (2007). Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. Plant Physiol. 143: 156-171.
-
(2007)
Plant Physiol.
, vol.143
, pp. 156-171
-
-
Müller, R.1
Morant, M.2
Jarmer, H.3
Nilsson, L.4
Nielsen, T.H.5
-
39
-
-
84890312553
-
Rice DB: An Oryza Information Portal linking annotation, sub-cellular location, function, expression, regulation and evolutionary information for rice and Arabidopsis
-
October 21
-
Narsai, R., Devenish, J., Castleden, I., Narsai, K., Xu, L., Shou, H., and Whelan, J. (October 21, 2013). Rice DB: An Oryza Information Portal linking annotation, sub-cellular location, function, expression, regulation and evolutionary information for rice and Arabidopsis. Plant J. http://dx.doi.org/10.1111/tpj.12357.
-
(2013)
Plant J.
-
-
Narsai, R.1
Devenish, J.2
Castleden, I.3
Narsai, K.4
Xu, L.5
Shou, H.6
Whelan, J.7
-
40
-
-
77950388585
-
Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets
-
Narsai, R., Ivanova, A., Ng, S., and Whelan, J. (2010). Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol. 10: 56.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 56
-
-
Narsai, R.1
Ivanova, A.2
Ng, S.3
Whelan, J.4
-
41
-
-
77953983819
-
Dissecting the plant transcriptome and the regulatory responses to phosphate deprivation
-
Nilsson, L., Müller, R., and Nielsen, T.H. (2010). Dissecting the plant transcriptome and the regulatory responses to phosphate deprivation. Physiol. Plant. 139: 129-143.
-
(2010)
Physiol. Plant.
, vol.139
, pp. 129-143
-
-
Nilsson, L.1
Müller, R.2
Nielsen, T.H.3
-
42
-
-
75549086594
-
InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
-
Ostlund, G., Schmitt, T., Forslund, K., Köstler, T., Messina, D.N., Roopra, S., Frings, O., and Sonnhammer, E.L.L. (2010). InParanoid 7: New algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38 (Database issue): D196-D203.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ostlund, G.1
Schmitt, T.2
Forslund, K.3
Köstler, T.4
Messina, D.N.5
Roopra, S.6
Frings, O.7
Sonnhammer, E.L.L.8
-
43
-
-
67650156804
-
Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
-
Pant, B.D., Musialak-Lange, M., Nuc, P., May, P., Buhtz, A., Kehr, J., Walther, D., and Scheible, W.R. (2009). Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol. 150: 1541-1555.
-
(2009)
Plant Physiol.
, vol.150
, pp. 1541-1555
-
-
Pant, B.D.1
Musialak-Lange, M.2
Nuc, P.3
May, P.4
Buhtz, A.5
Kehr, J.6
Walther, D.7
Scheible, W.R.8
-
44
-
-
79961020658
-
Root developmental adaptation to phosphate starvation: Better safe than sorry
-
Péret, B., Clément, M., Nussaume, L., and Desnos, T. (2011). Root developmental adaptation to phosphate starvation: Better safe than sorry. Trends Plant Sci. 16: 442-450.
-
(2011)
Trends Plant Sci.
, vol.16
, pp. 442-450
-
-
Péret, B.1
Clément, M.2
Nussaume, L.3
Desnos, T.4
-
45
-
-
79959983840
-
Metabolic adaptations of phosphate-starved plants
-
Plaxton, W.C., and Tran, H.T. (2011). Metabolic adaptations of phosphate-starved plants. Plant Physiol. 156: 1006-1015.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1006-1015
-
-
Plaxton, W.C.1
Tran, H.T.2
-
46
-
-
0347861780
-
Phosphate transport and homeostasis in Arabidopsis
-
doi/ 10.1199/tab.0024
-
Poirier, Y., and Bucher, M. (2002). Phosphate transport and homeostasis in Arabidopsis. The Arabidopsis Book 1: e0024, doi/ 10.1199/tab.0024.
-
(2002)
The Arabidopsis Book
, vol.1
-
-
Poirier, Y.1
Bucher, M.2
-
47
-
-
33645079140
-
Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana
-
Reymond, M., Svistoonoff, S., Loudet, O., Nussaume, L., and Desnos, T. (2006). Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana. Plant Cell Environ. 29: 115-125.
-
(2006)
Plant Cell Environ.
, vol.29
, pp. 115-125
-
-
Reymond, M.1
Svistoonoff, S.2
Loudet, O.3
Nussaume, L.4
Desnos, T.5
-
48
-
-
77950273261
-
Regulation of phosphate starvation responses in plants: Signaling players and cross-talks
-
Rouached, H., Arpat, A.B., and Poirier, Y. (2010). Regulation of phosphate starvation responses in plants: Signaling players and cross-talks. Mol. Plant 3: 288-299.
-
(2010)
Mol. Plant
, vol.3
, pp. 288-299
-
-
Rouached, H.1
Arpat, A.B.2
Poirier, Y.3
-
49
-
-
79551622383
-
Uncoupling phosphate deficiency from its major effects on growth and transcriptome via PHO1 expression in Arabidopsis
-
Rouached, H., Stefanovic, A., Secco, D., Bulak Arpat, A., Gout, E., Bligny, R., and Poirier, Y. (2011). Uncoupling phosphate deficiency from its major effects on growth and transcriptome via PHO1 expression in Arabidopsis. Plant J. 65: 557-570.
-
(2011)
Plant J.
, vol.65
, pp. 557-570
-
-
Rouached, H.1
Stefanovic, A.2
Secco, D.3
Bulak Arpat, A.4
Gout, E.5
Bligny, R.6
Poirier, Y.7
-
50
-
-
0035881704
-
A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae
-
Rubio, V., Linhares, F., Solano, R., Martín, A.C., Iglesias, J., Leyva, A., and Paz-Ares, J. (2001). A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes Dev. 15: 2122-2133.
-
(2001)
Genes Dev.
, vol.15
, pp. 2122-2133
-
-
Rubio, V.1
Linhares, F.2
Solano, R.3
Martín, A.C.4
Iglesias, J.5
Leyva, A.6
Paz-Ares, J.7
-
51
-
-
84874236029
-
Rice Annotation Project Database (RAP-DB): An integrative and interactive database for rice genomics
-
Sakai, H., et al. (2013). Rice Annotation Project Database (RAP-DB): An integrative and interactive database for rice genomics. Plant Cell Physiol. 54: e6.
-
(2013)
Plant Cell Physiol.
, vol.54
-
-
Sakai, H.1
-
52
-
-
77949537126
-
Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons
-
Secco, D., Baumann, A., and Poirier, Y. (2010). Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons. Plant Physiol. 152: 1693-1704.
-
(2010)
Plant Physiol.
, vol.152
, pp. 1693-1704
-
-
Secco, D.1
Baumann, A.2
Poirier, Y.3
-
53
-
-
84856548914
-
The emerging importance of the SPX domain-containing proteins in phosphate homeostasis
-
Secco, D., Wang, C., Arpat, B.A., Wang, Z., Poirier, Y., Tyerman, S. D., Wu, P., Shou, H., and Whelan, J. (2012). The emerging importance of the SPX domain-containing proteins in phosphate homeostasis. New Phytol. 193: 842-851.
-
(2012)
New Phytol.
, vol.193
, pp. 842-851
-
-
Secco, D.1
Wang, C.2
Arpat, B.A.3
Wang, Z.4
Poirier, Y.5
Tyerman, S.D.6
Wu, P.7
Shou, H.8
Whelan, J.9
-
54
-
-
84864722499
-
A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice
-
Sun, S., Gu, M., Cao, Y., Huang, X., Zhang, X., Ai, P., Zhao, J., Fan, X., and Xu, G. (2012). A constitutive expressed phosphate transporter, OsPht1;1, modulates phosphate uptake and translocation in phosphate-replete rice. Plant Physiol. 159: 1571-1581.
-
(2012)
Plant Physiol.
, vol.159
, pp. 1571-1581
-
-
Sun, S.1
Gu, M.2
Cao, Y.3
Huang, X.4
Zhang, X.5
Ai, P.6
Zhao, J.7
Fan, X.8
Xu, G.9
-
55
-
-
78649546603
-
Dissection of local and systemic transcriptional responses to phosphate starvation in Arabidopsis
-
Thibaud, M.C., Arrighi, J.F., Bayle, V., Chiarenza, S., Creff, A., Bustos, R., Paz-Ares, J., Poirier, Y., and Nussaume, L. (2010). Dissection of local and systemic transcriptional responses to phosphate starvation in Arabidopsis. Plant J. 64: 775-789.
-
(2010)
Plant J.
, vol.64
, pp. 775-789
-
-
Thibaud, M.C.1
Arrighi, J.F.2
Bayle, V.3
Chiarenza, S.4
Creff, A.5
Bustos, R.6
Paz-Ares, J.7
Poirier, Y.8
Nussaume, L.9
-
56
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D.R., Pimentel, H., Salzberg, S.L., Rinn, J.L., and Pachter, L. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7: 562-578.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
57
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., Williams, B.A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M.J., Salzberg, S.L., Wold, B.J., and Pachter, L. (2010). Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28: 511-515.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
58
-
-
33846584605
-
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
-
Usadel, B., Nagel, A., Steinhauser, D., Gibon, Y., Bläsing, O.E., Redestig, H., Sreenivasulu, N., Krall, L., Hannah, M.A., Poree, F., Fernie, A.R., and Stitt, M. (2006). PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7: 535.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 535
-
-
Usadel, B.1
Nagel, A.2
Steinhauser, D.3
Gibon, Y.4
Bläsing, O.E.5
Redestig, H.6
Sreenivasulu, N.7
Krall, L.8
Hannah, M.A.9
Poree, F.10
Fernie, A.R.11
Stitt, M.12
-
59
-
-
84862529365
-
Opportunities for improving phosphorus-use efficiency in crop plants
-
Veneklaas, E.J., Lambers, H., Bragg, J., Finnegan, P.M., Lovelock, C.E., Plaxton, W.C., Price, C.A., Scheible, W.R., Shane, M.W., White, P.J., and Raven, J.A. (2012). Opportunities for improving phosphorus-use efficiency in crop plants. New Phytol. 195: 306-320.
-
(2012)
New Phytol.
, vol.195
, pp. 306-320
-
-
Veneklaas, E.J.1
Lambers, H.2
Bragg, J.3
Finnegan, P.M.4
Lovelock, C.E.5
Plaxton, W.C.6
Price, C.A.7
Scheible, W.R.8
Shane, M.W.9
White, P.J.10
Raven, J.A.11
-
60
-
-
84865569878
-
Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves
-
Wang, C., Huang, W., Ying, Y., Li, S., Secco, D., Tyerman, S., Whelan, J., and Shou, H. (2012). Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves. New Phytol. 196: 139-148.
-
(2012)
New Phytol.
, vol.196
, pp. 139-148
-
-
Wang, C.1
Huang, W.2
Ying, Y.3
Li, S.4
Secco, D.5
Tyerman, S.6
Whelan, J.7
Shou, H.8
-
61
-
-
61349097169
-
Involvement of OsSPX1 in phosphate homeostasis in rice
-
Wang, C., Ying, S., Huang, H., Li, K., Wu, P., and Shou, H. (2009a). Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J. 57: 895-904.
-
(2009)
Plant J.
, vol.57
, pp. 895-904
-
-
Wang, C.1
Ying, S.2
Huang, H.3
Li, K.4
Wu, P.5
Shou, H.6
-
62
-
-
67649887322
-
Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice
-
Wang, Z., Hu, H., Huang, H., Duan, K., Wu, Z., and Wu, P. (2009b). Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice. J. Integr. Plant Biol. 51: 663-674.
-
(2009)
J. Integr. Plant Biol.
, vol.51
, pp. 663-674
-
-
Wang, Z.1
Hu, H.2
Huang, H.3
Duan, K.4
Wu, Z.5
Wu, P.6
-
63
-
-
33745593966
-
Transcriptomic analysis indicates putative metabolic changes caused by manipulation of phosphorus availability in rice leaves
-
Wasaki, J., et al. (2006). Transcriptomic analysis indicates putative metabolic changes caused by manipulation of phosphorus availability in rice leaves. J. Exp. Bot. 57: 2049-2059.
-
(2006)
J. Exp. Bot.
, vol.57
, pp. 2049-2059
-
-
Wasaki, J.1
-
64
-
-
0141796610
-
Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots
-
Wasaki, J., et al. (2003). Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots. Plant Cell Environ. 26: 1515-1523.
-
(2003)
Plant Cell Environ.
, vol.26
, pp. 1515-1523
-
-
Wasaki, J.1
-
65
-
-
84860387015
-
The response and recovery of the Arabidopsis thaliana transcriptome to phosphate starvation
-
Woo, J., MacPherson, C.R., Liu, J., Wang, H., Kiba, T., Hannah, M.A., Wang, X.J., Bajic, V.B., and Chua, N.H. (2012). The response and recovery of the Arabidopsis thaliana transcriptome to phosphate starvation. BMC Plant Biol. 12: 62.
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 62
-
-
Woo, J.1
McPherson, C.R.2
Liu, J.3
Wang, H.4
Kiba, T.5
Hannah, M.A.6
Wang, X.J.7
Bajic, V.B.8
Chua, N.H.9
-
66
-
-
84878620082
-
Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis
-
Wu, P., Shou, H., Xu, G., and Lian, X. (2013). Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis. Curr. Opin. Plant Biol. 16: 205-212.
-
(2013)
Curr. Opin. Plant Biol.
, vol.16
, pp. 205-212
-
-
Wu, P.1
Shou, H.2
Xu, G.3
Lian, X.4
-
67
-
-
80052418740
-
Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice
-
Wu, Z.C., Ren, H.Y., McGrath, S.P., Wu, P., and Zhao, F.J. (2011). Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice. Plant Physiol. 157: 498-508.
-
(2011)
Plant Physiol.
, vol.157
, pp. 498-508
-
-
Wu, Z.C.1
Ren, H.Y.2
McGrath, S.P.3
Wu, P.4
Zhao, F.J.5
-
68
-
-
0003966778
-
-
3rd ed, (Manila, The Philippines: The International Rice Research Institute)
-
Yoshida, S., Forno, D., Cock, J., and Gomez, K. (1976). Laboratory Manual for Physiological Studies of Rice, 3rd ed. (Manila, The Philippines: The International Rice Research Institute).
-
(1976)
Laboratory Manual for Physiological Studies of Rice
-
-
Yoshida, S.1
Forno, D.2
Cock, J.3
Gomez, K.4
-
69
-
-
79955782917
-
Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis
-
Zhao, M., Ding, H., Zhu, J.K., Zhang, F.S., and Li, W.X. (2011). Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New Phytol. 190: 906-915.
-
(2011)
New Phytol.
, vol.190
, pp. 906-915
-
-
Zhao, M.1
Ding, H.2
Zhu, J.K.3
Zhang, F.S.4
Li, W.X.5
-
70
-
-
70349213941
-
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings
-
Zheng, L., Huang, F., Narsai, R., Wu, J., Giraud, E., He, F., Cheng, L., Wang, F., Wu, P., Whelan, J., and Shou, H. (2009). Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. Plant Physiol. 151: 262-274.
-
(2009)
Plant Physiol.
, vol.151
, pp. 262-274
-
-
Zheng, L.1
Huang, F.2
Narsai, R.3
Wu, J.4
Giraud, E.5
He, F.6
Cheng, L.7
Wang, F.8
Wu, P.9
Whelan, J.10
Shou, H.11
-
71
-
-
48249107702
-
OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants
-
Zhou, J., Jiao, F., Wu, Z., Li, Y., Wang, X., He, X., Zhong, W., and Wu, P. (2008). OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants. Plant Physiol. 146: 1673-1686.
-
(2008)
Plant Physiol.
, vol.146
, pp. 1673-1686
-
-
Zhou, J.1
Jiao, F.2
Wu, Z.3
Li, Y.4
Wang, X.5
He, X.6
Zhong, W.7
Wu, P.8
|