-
1
-
-
84878572794
-
Biogenesis and function of rice small RNAs from non-coding RNA precursors
-
doi:10.1016/j.pbi.2013.01.006
-
Arikit, S., J. Zhai, and B.C. Meyers. 2013. Biogenesis and function of rice small RNAs from non-coding RNA precursors. Curr. Opin. Plant Biol. 16:170-179. doi:10.1016/j.pbi.2013.01.006.
-
(2013)
Curr. Opin. Plant Biol
, vol.16
, pp. 170-179
-
-
Arikit, S.1
Zhai, J.2
Meyers, B.C.3
-
2
-
-
79952152627
-
Nuclear DNA amounts in angiosperms: Targets, trends and tomorrow
-
doi:10.1093/aob/mcq258
-
Bennett, M.D., and I.J. Leitch. 2011. Nuclear DNA amounts in angiosperms: Targets, trends and tomorrow. Ann. Bot. (Lond.) 107(3):467-590. doi:10.1093/aob/mcq258.
-
(2011)
Ann. Bot. (Lond.)
, vol.107
, Issue.3
, pp. 467-590
-
-
Bennett, M.D.1
Leitch, I.J.2
-
3
-
-
0033976643
-
Transposable element contributions to plant gene and genome evolution
-
doi:10.1023/A:1006344508454
-
Bennetzen, J.L. 2000. Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol. 42(1):251-269. doi:10.1023/A:1006344508454.
-
(2000)
Plant Mol. Biol
, vol.42
, Issue.1
, pp. 251-269
-
-
Bennetzen, J.L.1
-
4
-
-
6044226955
-
Consistent over-estimation of gene number in complex plant genomes
-
doi:10.1016/j.pbi.2004.09.003
-
Bennetzen, J.L., C. Coleman, R. Liu, J. Ma, and W. Ramakrishna. 2004. Consistent over-estimation of gene number in complex plant genomes. Curr. Opin. Plant Biol. 7:732-736. doi:10.1016/j.pbi.2004.09.003.
-
(2004)
Curr. Opin. Plant Biol
, vol.7
, pp. 732-736
-
-
Bennetzen, J.L.1
Coleman, C.2
Liu, R.3
Ma, J.4
Ramakrishna, W.5
-
5
-
-
67649292737
-
modENCODE Consortium. Unlocking the secrets of the genome
-
doi:10.1038/459927a
-
Celniker, S.E., L.A. Dillon, M.B. Gerstein, K.C. Gunsalus, S. Henikoff, G.H. Karpen, M. Kellis, E.C. Lai, J.D. Lieb, D.M. MacAlpine, G. Micklem, F. Piano, M. Snyder, L. Stein, K.P. White, and R.H. Waterston. 2009. modENCODE Consortium. Unlocking the secrets of the genome. Nature 459(7249):927-930. doi:10.1038/459927a.
-
(2009)
Nature
, vol.459
, Issue.7249
, pp. 927-930
-
-
Celniker, S.E.1
Dillon, L.A.2
Gerstein, M.B.3
Gunsalus, K.C.4
Henikoff, S.5
Karpen, G.H.6
Kellis, M.7
Lai, E.C.8
Lieb, J.D.9
Macalpine, D.M.10
Micklem, G.11
Piano, F.12
Snyder, M.13
Stein, L.14
White, K.P.15
Waterst, R.H.16
On17
-
6
-
-
84864696893
-
-
doi:10.1038/nature11241
-
D'Hont, A., F. Denoeud, J.M. Aury, F.C. Baurens, F. Carreel, O. Garsmeur, B. Noel, S. Bocs, G. Droc, M. Rouard, C. Da Silva, K. Jabbari, C. Cardi, J. Poulain, M. Souquet, K. Labadie, C. Jourda, J. Lengellé, M. Rodier-Goud, A. Alberti, M. Bernard, M. Correa, S. Ayyampalayam, M.R. McKain, J. Leebens-Mack, D. Burgess, M. Freeling, D. Mbéguié-A-Mbéguié, M. Chabannes, T. Wicker, O. Panaud, J. Barbosa, E. Hribova, P. Heslop-Harrison, R. Habas, R. Rivallan, P. Francois, C. Poiron, A. Kilian, D. Burthia, C. Jenny, F. Bakry, S. Brown, V. Guignon, G. Kema, M. Dita, C. Waalwijk, S. Joseph, A. Dievart, O. Jaillon, J. Leclercq, X. Argout, E. Lyons, A. Almeida, M. Jeridi, J. Dolezel, N. Roux, A.M. Risterucci, J. Weissenbach, M. Ruiz, J.C. Glaszmann, F. Quétier, N. Yahiaoui, and P. Wincker. 2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, doi:10.1038/nature11241.
-
(2012)
The Banana (Musa Acuminata) Genome and The Evolution of Monocotyledonous Plants. Nature
-
-
D'Hont, A.1
Denoeud, F.2
Aury, J.M.3
Baurens, F.C.4
Carreel, F.5
Garsmeur, O.6
Noel, B.7
Bocs, S.8
Droc, G.9
Rouard, M.10
da Silva, C.11
Jabbari, K.12
Cardi, C.13
Poulain, J.14
Souquet, M.15
Labadie, K.16
Jourda, C.17
Lengellé, J.18
Rodier-Goud, M.19
Alberti, A.20
Bernard, M.21
Correa, M.22
Ayyampalayam, S.23
McKain, M.R.24
Leebens-Mack, J.25
Burgess26
Freeling, M.27
Mbéguié-A-Mbéguié, D.28
Chabannes, M.29
Wicker, T.30
Panaud, O.31
Barbosa32
Hribova, E.33
Heslop-Harrison, P.34
Habas, R.35
Rivallan, R.36
Francois, P.37
Poiron, C.38
Kilian, A.39
Burthia, D.40
Jenny, C.41
Bakry, F.42
Brown, S.43
Guignon, V.44
Kema, G.45
Dita, M.46
Waalwijk, C.47
Joseph, S.48
Dievart, A.49
Jaillon, O.50
Leclercq, J.51
Argout, X.52
Lyons, E.53
Almeida, A.54
Jeridi, M.55
Dolezel, J.56
Roux, N.57
Risterucci, A.M.58
Weissenbach, J.59
Ruiz, M.60
Glaszmann, J.C.61
Quétier, F.62
Yahiaoui, N.63
Wincker, P.64
more..
-
7
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
doi:10.1038/35103511
-
Eddy, S.R. 2001. Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2:919-929. doi:10.1038/35103511
-
(2001)
Nat Rev. Genet
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
8
-
-
84883766888
-
Variation in DNA methylation patterns is more common among maize inbreds than among tissues
-
doi:10.3835/plantgenome2012.06.0009
-
Eichten, S.R., M.W. Vaughn, P.J. Hermanson, and N.M. Springer. 2013. Variation in DNA methylation patterns is more common among maize inbreds than among tissues. Plant Gen. 6, doi:10.3835/plantgenome2012.06.0009.
-
(2013)
Plant Gen
, pp. 6
-
-
Eichten, S.R.1
Vaughn, M.W.2
Hermanson, P.J.3
Springer, N.M.4
-
9
-
-
84883760607
-
Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution
-
doi:10.1093/gbe/evt025
-
El Baidouri, M., and O. Panaud. 2013. Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution. Genome Biol. Evol. 5(5):954-965. doi:10.1093/gbe/evt025
-
(2013)
Genome Biol Evol
, vol.5
, Issue.5
, pp. 954-965
-
-
El Baidouri, M.1
Panaud, O.2
-
10
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium, doi:10.1038/nature11247
-
ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74. doi:10.1038/nature11247.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 57-74
-
-
-
11
-
-
84870265846
-
A physical, genetic and functional sequence assembly of the barley genome
-
International Barley Genome Sequencing Consortium, 10.1038/nature11543
-
International Barley Genome Sequencing Consortium, K.F. Mayer, R. Waugh, J.W. Brown, A. Schulman, P. Langridge, M. Platzer, G.B. Fincher, G.J. Muehlbauer, K. Sato, T.J. Close, R.P. Wise, and N. Stein. 2012. A physical, genetic and functional sequence assembly of the barley genome. Nature 491(7426):711-716. 10.1038/nature11543.
-
(2012)
Nature
, vol.491
, Issue.7426
, pp. 711-716
-
-
Mayer, K.F.1
Waugh, R.2
Brown, J.W.3
Schulman, A.4
Langridge, P.5
Platzer, M.6
Fincher, G.B.7
Muehlbauer, G.J.8
Sato, K.9
Close, T.J.10
Wise, R.P.11
Stein, N.12
-
12
-
-
77954270761
-
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
-
doi:10.1186/1471-2164-11-420
-
Kovach, A., J.L. Wegrzyn, G. Parra, C. Holt, G.E. Bruening, C.A. Loopstra, J. Hartigan, M. Yandell, C.H. Langley, I. Korf, and D.B. Neale. 2010. The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. BMC Genet. 11:420. doi:10.1186/1471-2164-11-420.
-
(2010)
BMC Genet
, vol.11
, pp. 420
-
-
Kovach, A.1
Wegrzyn, J.L.2
Parra, G.3
Holt, C.4
Bruening, G.E.5
Loopstra, C.A.6
Hartigan, J.7
Yandell, M.8
Langley, C.H.9
Korf, I.10
Neale, D.B.11
-
13
-
-
33749392949
-
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
doi:10.1101/gr.5290206
-
Piegu, B., R. Guyot, N. Picault, A. Roulin, A. Sanyal, H. Kim, K. Collura, D.S. Brar, S.A. Jackson, R.A. Wing, and O. Panaud. 2006. Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genet. Res. 16:1262-1269. doi:10.1101/gr.5290206.
-
(2006)
Genet. Res
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Sanyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.A.9
Wing, R.A.10
Panaud, O.11
-
14
-
-
84883746158
-
Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform
-
doi:10.3835/plantgenome2013.05.0017
-
Roorkiwal, M., S.L. Sawargaonkar, A. Chitikineni, M. Thudi, R.K. Saxena, H.D. Upadhyaya, M.I. Vales, O. Riera-Lizarazu, and R.K. Varshney. 2013. Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform. Plant Gen. 6, doi:10.3835/plantgenome2013.05.0017.
-
(2013)
Plant Gen
, pp. 6
-
-
Roorkiwal, M.1
Sawargaonkar, S.L.2
Chitikineni, A.3
Thudi, M.4
Saxena, R.K.5
Upadhyaya, H.D.6
Vales, M.I.7
Riera-Lizarazu, O.8
Varshney, R.K.9
-
15
-
-
84883753331
-
Inside arbuscular mycorrhizal roots- Molecular probes to understand the symbiosis
-
doi:10.3835/plantgenome2012.06.0007
-
Ruzicka, D., S. Chamala, F.H. Barrios-Masias, F. Martin, S. Smith, L.E. Jackson, W.B. Barbazuk, and D.P. Schachtman. 2013. Inside arbuscular mycorrhizal roots- Molecular probes to understand the symbiosis. Plant Gen. 6, doi:10.3835/plantgenome2012.06.0007.
-
(2013)
Plant Gen
, pp. 6
-
-
Ruzicka, D.1
Chamala, S.2
Barrios-Masias, F.H.3
Martin, F.4
Smith, S.5
Jackson, L.E.6
Barbazuk, W.B.7
Schachtman, D.P.8
-
16
-
-
84860342753
-
Current challenges in de novo plant genome sequencing and assembly
-
Schatz, M.C., J. Witkowski, and W.R. McCombie. 2012. Current challenges in de novo plant genome sequencing and assembly. Genome Biol. 13(4):243.
-
(2012)
Genome Biol
, vol.13
, Issue.4
, pp. 243
-
-
Schatz, M.C.1
Witkowski, J.2
McCombie, W.R.3
-
17
-
-
84879686532
-
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
-
doi:10.1038/ng.2669
-
Slotte, T., K.M. Hazzouri, J.A. Agren, D. Koenig, F. Maumus, Y.L. Guo, K. Steige, A.E. Platts, J.S. Escobar, L.K. Newman, W. Wang, T. Mandáková, E. Vello, L.M. Smith, S.R. Henz, J. Steffen, S. Takuno, Y. Brandvain, G. Coop, P. Andolfatto, T.T. Hu, M. Blanchette, R.M. Clark, H. Quesneville, M. Nordborg, B.S. Gaut, M.A. Lysak, J. Jenkins, J. Grimwood, J. Chapman, S. Prochnik, S. Shu, D. Rokhsar, J. Schmutz, D. Weigel, and S.I. Wright. 2013. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat. Genet. 45(7):831-835. doi:10.1038/ng.2669.
-
(2013)
Nat Genet
, vol.45
, Issue.7
, pp. 831-835
-
-
Slotte, T.1
Hazzouri, K.M.2
Agren, J.A.3
Koenig, D.4
Maumus, F.5
Guo, Y.L.6
Steige, K.7
Platts, A.E.8
Escobar, J.S.9
Newman, L.K.10
Wang, W.11
Mandáková, T.12
Vello, E.13
Smith, L.M.14
Henz, S.R.15
Steffen, J.16
Takuno, S.17
Brandvain, Y.18
Coop, G.19
Andolfatto, P.20
Hu, T.T.21
Blanchette, M.22
Clark, R.M.23
Quesneville, H.24
Nordborg, M.25
Gaut, B.S.26
Lysak, M.A.27
Jenkins, J.28
Grimwood, J.29
Chapman, J.30
Prochnik, S.31
Shu, S.32
Rokhsar, D.33
Schmutz, J.34
Weigel, D.35
Wright, S.I.36
more..
-
18
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
Tomato Genome Consortium, doi:10.1038/nature11119
-
Tomato Genome Consortium. 2012. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485(7400):635-641. doi:10.1038/nature11119.
-
(2012)
Nature
, vol.485
, Issue.7400
, pp. 635-641
-
-
-
19
-
-
84862956715
-
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
-
doi:10.1038/nbt.2022
-
Varshney, R.K., W. Chen, Y. Li, A.K. Bharti, R.K. Saxena, J.A. Schlueter, M.T.A. Donoghue, S. Azam, G. Fan, A.M. Whaley, A. Farmer, R. Tuetja, R.V. Penmetsa, W. Wu, H. Upadhyaya, S.-P. Yang, T. Shah, K.B. Saxena, E. Ward, T. Michael, W. R. McCombie, B. Yang, J.D.G. Jones, C. Spillane, D.R. Cook, G.D. May, X. Xu, and S.A. Jackson. 2012. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotech. doi:10.1038/nbt.2022
-
(2012)
Nature Biotech
-
-
Varshney, R.K.1
Chen, W.2
Li, Y.3
Bharti, A.K.4
Saxena, R.K.5
Schlueter, J.A.6
Donoghue, M.T.A.7
Azam, S.8
Fan, G.9
Whaley, A.M.10
Farmer, A.11
Tuetja, R.12
Penmetsa, R.V.13
Wu, W.14
Upadhyaya, H.15
Yang, S.-P.16
Shah, T.17
Saxena, K.B.18
Ward, E.19
Michael, T.20
McCombie, W.R.21
Yang, B.22
Jones, J.D.G.23
Spillane, C.24
Cook, D.R.25
May, G.D.26
Xu, X.27
Jackson, S.A.28
more..
-
20
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
doi:10.1038/nrg2165
-
Wicker, T., F. Sabot, A. Hua-Van, J.L. Bennetzen, P. Capy, B. Chalhoub, A. Flavell, P. Leroy, M. Morgante, O. Panaud, E. Paux, P. SanMiguel, and A.H. Schulman. 2007. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8(12):973-982. doi:10.1038/nrg2165.
-
(2007)
Nat Rev. Genet
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
Paux, E.11
Sanmiguel, P.12
Schulman, A.H.13
-
21
-
-
84873386377
-
The genome of the pear (Pyrus bretschneideri Rehd.)
-
doi:10.1101/gr.144311.112
-
Wu, J., Z. Wang, Z. Shi, S. Zhang, R. Ming, S. Zhu, M.A. Khan, S. Tao, S.S. Korban, H. Wang, N.J. Chen, T. Nishio, X. Xu, L. Cong, K. Qi, X. Huang, Y. Wang, X. Zhao, J. Wu, C. Deng, C. Gou, W. Zhou, H. Yin, G. Qin, Y. Sha, Y. Tao, H. Chen, Y. Yang, Y. Song, D. Zhan, J. Wang, L. Li, M. Dai, C. Gu, Y. Wang, D. Shi, X. Wang, H. Zhang, L. Zeng, D. Zheng, C. Wang, M. Chen, G. Wang, L. Xie, V. Sovero, S. Sha, W. Huang, S. Zhang, M. Zhang, J. Sun, L. Xu, Y. Li, X. Liu, Q. Li, J. Shen, J. Wang, R.E. Paull, J.L. Bennetzen, J. Wang, and S. Zhang. 2013. The genome of the pear (Pyrus bretschneideri Rehd.). Genet. Res. 23(2):396-408. doi:10.1101/gr.144311.112.
-
(2013)
Genet. Res
, vol.23
, Issue.2
, pp. 396-408
-
-
Wu, J.1
Wang, Z.2
Shi, Z.3
Zhang, S.4
Ming, R.5
Zhu, S.6
Khan, M.A.7
Tao, S.8
Korban, S.S.9
Wang, H.10
Chen, N.J.11
Nishio, T.12
Xu, X.13
Cong, L.14
Qi, K.15
Huang, X.16
Wang, Y.17
Zhao, X.18
Wu, J.19
Deng, C.20
Gou, C.21
Zhou, W.22
Yin, H.23
Qin, G.24
Sha, Y.25
Tao, Y.26
Chen, H.27
Yang, Y.28
Song, Y.29
Zhan, D.30
Wang, J.31
Li, L.32
Dai, M.33
Gu, C.34
Wang, Y.35
Shi, D.36
Wang, X.37
Zhang, H.38
Zeng, L.39
Zheng, D.40
Wang, C.41
Chen, M.42
Wang, G.43
Xie, L.44
Sovero, V.45
Sha, S.46
Huang, W.47
Zhang, S.48
Zhang, M.49
Sun, J.50
Xu, L.51
Li, Y.52
Liu, X.53
Li, Q.54
Shen, J.55
Wang, J.56
Paull, R.E.57
Bennetzen, J.L.58
Wang, J.59
Zhang, S.60
more..
-
22
-
-
84883811165
-
Ionomic screening of field-grown soybean identifies mutants with altered seed elemental composition
-
doi:10.3835/plantgenome2012.07.0012
-
Ziegler, G., A. Terauchi, A. Becker, P. Armstrong, K. Hudson, and I. Baxter. 2013. Ionomic screening of field-grown soybean identifies mutants with altered seed elemental composition. Plant Gen. 6, doi:10.3835/plantgenome2012.07.0012.
-
(2013)
Plant Gen
, pp. 6
-
-
Ziegler, G.1
Terauchi, A.2
Becker, A.3
Armstrong, P.4
Hudson, K.5
Baxter, I.6
-
23
-
-
84873587727
-
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
-
doi:10.1038/nbt.2462
-
Zhong, S., Z. Fei, Y.R. Chen, Y. Zheng, M. Huang, J. Vrebalov, R. McQuinn, N. Gapper, B. Liu, J. Xiang, Y. Shao, and J.J. Giovannoni. 2013. Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nat. Biotechnol. 31(2):154-159. doi:10.1038/nbt.2462
-
(2013)
Nat Biotechnol
, vol.31
, Issue.2
, pp. 154-159
-
-
Zhong, S.1
Fei, Z.2
Chen, Y.R.3
Zheng, Y.4
Huang, M.5
Vrebalov, J.6
McQuinn, R.7
Gapper, N.8
Liu, B.9
Xiang, J.10
Shao, Y.11
Giovannoni, J.J.12
|