-
1
-
-
79956104516
-
Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants
-
Au PC, Zhu Q-H, Dennis ES, Wang M-B. 2011. Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants. RNA Biology 8: 404-414.
-
(2011)
RNA Biology
, vol.8
, pp. 404-414
-
-
Au, P.C.1
Zhu, Q.-H.2
Dennis, E.S.3
Wang, M.-B.4
-
2
-
-
61449126060
-
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
-
Ben Amor B, Wirth S, Merchan F, Laporte P, d'Aubenton-Carafa Y, Hirsch J, Maizel A, Mallory A, Lucas A, Deragon JM et al. 2009. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Research 19: 57-69.
-
(2009)
Genome Research
, vol.19
, pp. 57-69
-
-
Ben Amor, B.1
Wirth, S.2
Merchan, F.3
Laporte, P.4
d'Aubenton-Carafa, Y.5
Hirsch, J.6
Maizel, A.7
Mallory, A.8
Lucas, A.9
Deragon, J.M.10
-
3
-
-
69949159297
-
Pervasive transcription constitutes a new level of eukaryotic genome regulation
-
Berretta J, Morillon A. 2009. Pervasive transcription constitutes a new level of eukaryotic genome regulation. The EMBO Reports 10: 973-982.
-
(2009)
The EMBO Reports
, vol.10
, pp. 973-982
-
-
Berretta, J.1
Morillon, A.2
-
4
-
-
40849101606
-
Arabidopsis defense response against Fusarium oxysporum
-
Berrocal-Lobo M, Molina A. 2008. Arabidopsis defense response against Fusarium oxysporum. Trends in Plant Science 13: 145-150.
-
(2008)
Trends in Plant Science
, vol.13
, pp. 145-150
-
-
Berrocal-Lobo, M.1
Molina, A.2
-
5
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK. 2005. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123: 1279-1291.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
6
-
-
1842712418
-
Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula
-
Campalans A, Kondorosi A, Crespi M. 2004. Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula. The Plant Cell 16: 1047-1059.
-
(2004)
The Plant Cell
, vol.16
, pp. 1047-1059
-
-
Campalans, A.1
Kondorosi, A.2
Crespi, M.3
-
7
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ et al. 2004. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 116: 499-509.
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
Kapranov, P.4
Sekinger, E.A.5
Kampa, D.6
Piccolboni, A.7
Sementchenko, V.8
Cheng, J.9
Williams, A.J.10
-
8
-
-
37349038984
-
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
-
Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q et al. 2007. Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell 131: 1340-1353.
-
(2007)
Cell
, vol.131
, pp. 1340-1353
-
-
Chekanova, J.A.1
Gregory, B.D.2
Reverdatto, S.V.3
Chen, H.4
Kumar, R.5
Hooker, T.6
Yazaki, J.7
Li, P.8
Skiba, N.9
Peng, Q.10
-
9
-
-
84865605458
-
Small RNAs in development - insights from plants
-
Chen X. 2012. Small RNAs in development - insights from plants. Current Opinion in Genetics and Development 22: 361-367.
-
(2012)
Current Opinion in Genetics and Development
, vol.22
, pp. 361-367
-
-
Chen, X.1
-
10
-
-
77951888464
-
Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions
-
Chen WH, de Meaux J, Lercher MJ. 2010. Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions. BMC Genomics 11: 178.
-
(2010)
BMC Genomics
, vol.11
, pp. 178
-
-
Chen, W.H.1
de Meaux, J.2
Lercher, M.J.3
-
11
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF. 1998. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant Journal 16: 735-743.
-
(1998)
Plant Journal
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
13
-
-
0027552370
-
Nucleotide sequence of the tobacco (Nicotiana tabacum) anionic peroxidase gene
-
Diaz-De-Leon F, Klotz KL, Lagrimini LM. 1993. Nucleotide sequence of the tobacco (Nicotiana tabacum) anionic peroxidase gene. Plant Physiology 101: 1117-1118.
-
(1993)
Plant Physiology
, vol.101
, pp. 1117-1118
-
-
Diaz-De-Leon, F.1
Klotz, K.L.2
Lagrimini, L.M.3
-
15
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, Garcia JA, Paz-Ares J. 2007. Target mimicry provides a new mechanism for regulation of microRNA activity. Nature Genetics 39: 1033-1037.
-
(2007)
Nature Genetics
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
Mateos, I.4
Puga, M.I.5
Rubio-Somoza, I.6
Leyva, A.7
Weigel, D.8
Garcia, J.A.9
Paz-Ares, J.10
-
17
-
-
58149503664
-
Small-interfering RNAs from natural antisense transcripts derived from a cellulose synthase gene modulate cell wall biosynthesis in barley
-
20 534-20 539
-
Held MA, Penning B, Brandt AS, Kessans SA, Yong W, Scofield SR, Carpita NC. 2008. Small-interfering RNAs from natural antisense transcripts derived from a cellulose synthase gene modulate cell wall biosynthesis in barley. Proceedings of the National Academy of Sciences, USA 105: 20 534-20 539.
-
(2008)
Proceedings of the National Academy of Sciences, USA
, vol.105
-
-
Held, M.A.1
Penning, B.2
Brandt, A.S.3
Kessans, S.A.4
Yong, W.5
Scofield, S.R.6
Carpita, N.C.7
-
18
-
-
79959330166
-
Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts
-
Helliwell CA, Robertson M, Finnegan EJ, Buzas DM, Dennis ES. 2011. Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts. PLoS ONE 6: e21513.
-
(2011)
PLoS ONE
, vol.6
-
-
Helliwell, C.A.1
Robertson, M.2
Finnegan, E.J.3
Buzas, D.M.4
Dennis, E.S.5
-
20
-
-
0027661353
-
Pathogen, salicylic acid and developmental dependent expression of a beta-1,3-glucanase/GUS gene fusion in transgenic tobacco plants
-
Hennig J, Dewey RE, Cutt JR, Klessig DF. 1993. Pathogen, salicylic acid and developmental dependent expression of a beta-1, 3-glucanase/GUS gene fusion in transgenic tobacco plants. Plant Journal 4: 481-493.
-
(1993)
Plant Journal
, vol.4
, pp. 481-493
-
-
Hennig, J.1
Dewey, R.E.2
Cutt, J.R.3
Klessig, D.F.4
-
21
-
-
34447132252
-
Distinct expression patterns of natural antisense transcripts in Arabidopsis
-
Henz SR, Cumbie JS, Kasschau KD, Lohmann JU, Carrington JC, Weigel D, Schmid M. 2007. Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiology 144: 1247-1255.
-
(2007)
Plant Physiology
, vol.144
, pp. 1247-1255
-
-
Henz, S.R.1
Cumbie, J.S.2
Kasschau, K.D.3
Lohmann, J.U.4
Carrington, J.C.5
Weigel, D.6
Schmid, M.7
-
22
-
-
78650966670
-
Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
-
Heo JB, Sung S. 2011. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 331: 76-79.
-
(2011)
Science
, vol.331
, pp. 76-79
-
-
Heo, J.B.1
Sung, S.2
-
23
-
-
33745442032
-
Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts
-
Hirsch J, Lefort V, Vankersschaver M, Boualem A, Lucas A, Thermes C, d'Aubenton-Carafa Y, Crespi M. 2006. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts. Plant Physiology 140: 1192-1204.
-
(2006)
Plant Physiology
, vol.140
, pp. 1192-1204
-
-
Hirsch, J.1
Lefort, V.2
Vankersschaver, M.3
Boualem, A.4
Lucas, A.5
Thermes, C.6
d'Aubenton-Carafa, Y.7
Crespi, M.8
-
24
-
-
84869092510
-
Unexpected diversity of chloroplast noncoding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome
-
Hotto AM, Schmitz RJ, Fei Z, Ecker JR, Stern DB. 2011. Unexpected diversity of chloroplast noncoding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome. Genes Genomes Genetics 1: 559-570.
-
(2011)
Genes Genomes Genetics
, vol.1
, pp. 559-570
-
-
Hotto, A.M.1
Schmitz, R.J.2
Fei, Z.3
Ecker, J.R.4
Stern, D.B.5
-
25
-
-
24644488895
-
Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation
-
Jen CH, Michalopoulos I, Westhead DR, Meyer P. 2005. Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation. Genome Biology 6: R51.
-
(2005)
Genome Biology
, vol.6
-
-
Jen, C.H.1
Michalopoulos, I.2
Westhead, D.R.3
Meyer, P.4
-
26
-
-
12344291073
-
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
-
Johnson JM, Edwards S, Shoemaker D, Schadt EE. 2005. Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends in Genetics 21: 93-102.
-
(2005)
Trends in Genetics
, vol.21
, pp. 93-102
-
-
Johnson, J.M.1
Edwards, S.2
Shoemaker, D.3
Schadt, E.E.4
-
28
-
-
33845202133
-
A pathogen-inducible endogenous siRNA in plant immunity
-
18 002-18 007
-
Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A Jr, Zhu JK, Staskawicz BJ, Jin H. 2006. A pathogen-inducible endogenous siRNA in plant immunity. Proceedings of the National Academy of Sciences, USA 103: 18 002-18 007.
-
(2006)
Proceedings of the National Academy of Sciences, USA
, vol.103
-
-
Katiyar-Agarwal, S.1
Morgan, R.2
Dahlbeck, D.3
Borsani, O.4
Villegas Jr, A.5
Zhu, J.K.6
Staskawicz, B.J.7
Jin, H.8
-
29
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
11 667-11 672
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A et al. 2009. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences, USA 106: 11 667-11 672.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.106
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
van Oudenaarden, A.10
-
30
-
-
84856594225
-
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
-
Khraiwesh B, Zhu JK, Zhu J. 2012. Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochimica et Biophysica Acta 1819: 137-148.
-
(2012)
Biochimica et Biophysica Acta
, vol.1819
, pp. 137-148
-
-
Khraiwesh, B.1
Zhu, J.K.2
Zhu, J.3
-
31
-
-
70349682858
-
The mediator complex subunit PFT1 is a key regulator of jasmonate-dependent defense in Arabidopsis
-
Kidd BN, Edgar CI, Kumar KK, Aitken EA, Schenk PM, Manners JM, Kazan K. 2009. The mediator complex subunit PFT1 is a key regulator of jasmonate-dependent defense in Arabidopsis. The Plant Cell 21: 2237-2252.
-
(2009)
The Plant Cell
, vol.21
, pp. 2237-2252
-
-
Kidd, B.N.1
Edgar, C.I.2
Kumar, K.K.3
Aitken, E.A.4
Schenk, P.M.5
Manners, J.M.6
Kazan, K.7
-
32
-
-
79955722339
-
Auxin signaling and transport promote susceptibility to the root-infecting fungal pathogen Fusarium oxysporum in Arabidopsis
-
Kidd BN, Kadoo NY, Dombrecht B, Tekeoglu M, Gardiner DM, Thatcher LF, Aitken EA, Schenk PM, Manners JM, Kazan K. 2011. Auxin signaling and transport promote susceptibility to the root-infecting fungal pathogen Fusarium oxysporum in Arabidopsis. Molecular Plant-Microbe Interactions 24: 733-748.
-
(2011)
Molecular Plant-Microbe Interactions
, vol.24
, pp. 733-748
-
-
Kidd, B.N.1
Kadoo, N.Y.2
Dombrecht, B.3
Tekeoglu, M.4
Gardiner, D.M.5
Thatcher, L.F.6
Aitken, E.A.7
Schenk, P.M.8
Manners, J.M.9
Kazan, K.10
-
33
-
-
84871069553
-
Epigenetic regulation by long noncoding RNAs
-
Lee JT. 2012. Epigenetic regulation by long noncoding RNAs. Science 338: 1435-1439.
-
(2012)
Science
, vol.338
, pp. 1435-1439
-
-
Lee, J.T.1
-
34
-
-
84863393281
-
MicroRNA regulation of plant innate immune receptors
-
Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B. 2012. MicroRNA regulation of plant innate immune receptors. Proceedings of the National Academy of Sciences, USA 109: 1790-1795.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. 1790-1795
-
-
Li, F.1
Pignatta, D.2
Bendix, C.3
Brunkard, J.O.4
Cohn, M.M.5
Tung, J.6
Sun, H.7
Kumar, P.8
Baker, B.9
-
35
-
-
84871910383
-
Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis
-
Liu J, Jung C, Xu J, Wang H, Deng S, Bernad L, Arenas-Huertero C, Chua NH. 2012. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. The Plant Cell 24: 4333-4345.
-
(2012)
The Plant Cell
, vol.24
, pp. 4333-4345
-
-
Liu, J.1
Jung, C.2
Xu, J.3
Wang, H.4
Deng, S.5
Bernad, L.6
Arenas-Huertero, C.7
Chua, N.H.8
-
37
-
-
84871390926
-
Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice
-
Lu T, Zhu C, Lu G, Guo Y, Zhou Y, Zhang Z, Zhao Y, Li W, Lu Y, Tang W et al. 2012. Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice. BMC Genomics 13: 721.
-
(2012)
BMC Genomics
, vol.13
, pp. 721
-
-
Lu, T.1
Zhu, C.2
Lu, G.3
Guo, Y.4
Zhou, Y.5
Zhang, Z.6
Zhao, Y.7
Li, W.8
Lu, Y.9
Tang, W.10
-
38
-
-
84871967979
-
Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production
-
Luo C, Sidote DJ, Zhang Y, Kerstetter RA, Michael TP, Lam E. 2013. Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. Plant Journal 73: 77-90.
-
(2013)
Plant Journal
, vol.73
, pp. 77-90
-
-
Luo, C.1
Sidote, D.J.2
Zhang, Y.3
Kerstetter, R.A.4
Michael, T.P.5
Lam, E.6
-
39
-
-
0035198739
-
Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs
-
MacIntosh GC, Wilkerson C, Green PJ. 2001. Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs. Plant Physiology 127: 765-776.
-
(2001)
Plant Physiology
, vol.127
, pp. 765-776
-
-
MacIntosh, G.C.1
Wilkerson, C.2
Green, P.J.3
-
40
-
-
84863861287
-
Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts
-
Magistri M, Faghihi MA, St Laurent G 3rd, Wahlestedt C. 2012. Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts. Trends in Genetics 28: 389-396.
-
(2012)
Trends in Genetics
, vol.28
, pp. 389-396
-
-
Magistri, M.1
Faghihi, M.A.2
St Laurent III, G.3
Wahlestedt, C.4
-
41
-
-
0036898607
-
Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana
-
Marker C, Zemann A, Terhorst T, Kiefmann M, Kastenmayer JP, Green P, Bachellerie JP, Brosius J, Huttenhofer A. 2002. Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. Current Biology 12: 2002-2013.
-
(2002)
Current Biology
, vol.12
, pp. 2002-2013
-
-
Marker, C.1
Zemann, A.2
Terhorst, T.3
Kiefmann, M.4
Kastenmayer, J.P.5
Green, P.6
Bachellerie, J.P.7
Brosius, J.8
Huttenhofer, A.9
-
42
-
-
49449094591
-
Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array
-
Matsui A, Ishida J, Morosawa T, Mochizuki Y, Kaminuma E, Endo TA, Okamoto M, Nambara E, Nakajima M, Kawashima M et al. 2008. Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array. Plant and Cell Physiology 49: 1135-1149.
-
(2008)
Plant and Cell Physiology
, vol.49
, pp. 1135-1149
-
-
Matsui, A.1
Ishida, J.2
Morosawa, T.3
Mochizuki, Y.4
Kaminuma, E.5
Endo, T.A.6
Okamoto, M.7
Nambara, E.8
Nakajima, M.9
Kawashima, M.10
-
43
-
-
84855539848
-
Targeted RNA sequencing reveals the deep complexity of the human transcriptome
-
Mercer TR, Gerhardt DJ, Dinger ME, Crawford J, Trapnell C, Jeddeloh JA, Mattick JS, Rinn JL. 2011. Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nature Biotechnology 30: 99-104.
-
(2011)
Nature Biotechnology
, vol.30
, pp. 99-104
-
-
Mercer, T.R.1
Gerhardt, D.J.2
Dinger, M.E.3
Crawford, J.4
Trapnell, C.5
Jeddeloh, J.A.6
Mattick, J.S.7
Rinn, J.L.8
-
44
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 5: 621-628.
-
(2008)
Nature Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
45
-
-
34547701767
-
Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis
-
Nafisi M, Goregaoker S, Botanga CJ, Glawischnig E, Olsen CE, Halkier BA, Glazebrook J. 2007. Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis. The Plant Cell 19: 2039-2052.
-
(2007)
The Plant Cell
, vol.19
, pp. 2039-2052
-
-
Nafisi, M.1
Goregaoker, S.2
Botanga, C.J.3
Glawischnig, E.4
Olsen, C.E.5
Halkier, B.A.6
Glazebrook, J.7
-
46
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones JD. 2006. A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312: 436-439.
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
Estelle, M.6
Voinnet, O.7
Jones, J.D.8
-
47
-
-
77951839523
-
Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays
-
Okamoto M, Tatematsu K, Matsui A, Morosawa T, Ishida J, Tanaka M, Endo TA, Mochizuki Y, Toyoda T, Kamiya Y et al. 2010. Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays. Plant Journal 62: 39-51.
-
(2010)
Plant Journal
, vol.62
, pp. 39-51
-
-
Okamoto, M.1
Tatematsu, K.2
Matsui, A.3
Morosawa, T.4
Ishida, J.5
Tanaka, M.6
Endo, T.A.7
Mochizuki, Y.8
Toyoda, T.9
Kamiya, Y.10
-
48
-
-
0030972694
-
Rapid induction by wounding and bacterial infection of an S gene family receptor-like kinase gene in Brassica oleracea
-
Pastuglia M, Roby D, Dumas C, Cock JM. 1997. Rapid induction by wounding and bacterial infection of an S gene family receptor-like kinase gene in Brassica oleracea. The Plant Cell 9: 49-60.
-
(1997)
The Plant Cell
, vol.9
, pp. 49-60
-
-
Pastuglia, M.1
Roby, D.2
Dumas, C.3
Cock, J.M.4
-
49
-
-
77952415941
-
Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis
-
Ron M, Alandete Saez M, Eshed Williams L, Fletcher JC, McCormick S. 2010. Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis. Genes and Development 24: 1010-1021.
-
(2010)
Genes and Development
, vol.24
, pp. 1010-1021
-
-
Ron, M.1
Alandete Saez, M.2
Eshed Williams, L.3
Fletcher, J.C.4
McCormick, S.5
-
50
-
-
0029853904
-
Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes
-
Rushton PJ, Torres JT, Parniske M, Wernert P, Hahlbrock K, Somssich IE. 1996. Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes. The EMBO Journal 15: 5690-5700.
-
(1996)
The EMBO Journal
, vol.15
, pp. 5690-5700
-
-
Rushton, P.J.1
Torres, J.T.2
Parniske, M.3
Wernert, P.4
Hahlbrock, K.5
Somssich, I.E.6
-
51
-
-
84863658972
-
Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing
-
Sanchez-Leon N, Arteaga-Vazquez M, Alvarez-Mejia C, Mendiola-Soto J, Duran-Figueroa N, Rodriguez-Leal D, Rodriguez-Arevalo I, Garcia-Campayo V, Garcia-Aguilar M, Olmedo-Monfil V et al. 2012. Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing. Journal of Experimental Botany 63: 3829-3842.
-
(2012)
Journal of Experimental Botany
, vol.63
, pp. 3829-3842
-
-
Sanchez-Leon, N.1
Arteaga-Vazquez, M.2
Alvarez-Mejia, C.3
Mendiola-Soto, J.4
Duran-Figueroa, N.5
Rodriguez-Leal, D.6
Rodriguez-Arevalo, I.7
Garcia-Campayo, V.8
Garcia-Aguilar, M.9
Olmedo-Monfil, V.10
-
52
-
-
9144233601
-
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
-
15 776-15 781
-
Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T et al. 2003. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proceedings of the National Academy of Sciences, USA 100: 15 776-15 781.
-
(2003)
Proceedings of the National Academy of Sciences, USA
, vol.100
-
-
Shiraki, T.1
Kondo, S.2
Katayama, S.3
Waki, K.4
Kasukawa, T.5
Kawaji, H.6
Kodzius, R.7
Watahiki, A.8
Nakamura, M.9
Arakawa, T.10
-
53
-
-
84860126087
-
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BA, Baulcombe DC. 2012. A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. The Plant Cell 24: 859-874.
-
(2012)
The Plant Cell
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.M.2
Patel, K.3
Bond, D.M.4
Santos, B.A.5
Baulcombe, D.C.6
-
55
-
-
84862908875
-
The genomic binding sites of a noncoding RNA
-
20 497-20 502
-
Simon MD, Wang CI, Kharchenko PV, West JA, Chapman BA, Alekseyenko AA, Borowsky ML, Kuroda MI, Kingston RE. 2011. The genomic binding sites of a noncoding RNA. Proceedings of the National Academy of Sciences, USA 108: 20 497-20 502.
-
(2011)
Proceedings of the National Academy of Sciences, USA
, vol.108
-
-
Simon, M.D.1
Wang, C.I.2
Kharchenko, P.V.3
West, J.A.4
Chapman, B.A.5
Alekseyenko, A.A.6
Borowsky, M.L.7
Kuroda, M.I.8
Kingston, R.E.9
-
56
-
-
60949084179
-
Computational prediction of novel non-coding RNAs in Arabidopsis thaliana
-
Song D, Yang Y, Yu B, Zheng B, Deng Z, Lu BL, Chen X, Jiang T. 2009. Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. BMC Bioinformatics 10(Suppl 1): S36.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL 1
-
-
Song, D.1
Yang, Y.2
Yu, B.3
Zheng, B.4
Deng, Z.5
Lu, B.L.6
Chen, X.7
Jiang, T.8
-
58
-
-
80054689794
-
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J et al. 2011. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell 147: 370-381.
-
(2011)
Cell
, vol.147
, pp. 370-381
-
-
Sumazin, P.1
Yang, X.2
Chiu, H.S.3
Chung, W.J.4
Iyer, A.5
Llobet-Navas, D.6
Rajbhandari, P.7
Bansal, M.8
Guarnieri, P.9
Silva, J.10
-
60
-
-
72049133207
-
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
-
Swiezewski S, Liu F, Magusin A, Dean C. 2009. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 462: 799-802.
-
(2009)
Nature
, vol.462
, pp. 799-802
-
-
Swiezewski, S.1
Liu, F.2
Magusin, A.3
Dean, C.4
-
61
-
-
83055192078
-
Differential expression in RNA-seq: a matter of depth
-
Tarazona S, Garcia-Alcalde F, Dopazo J, Ferrer A, Conesa A. 2011. Differential expression in RNA-seq: a matter of depth. Genome Research 21: 2213-2223.
-
(2011)
Genome Research
, vol.21
, pp. 2213-2223
-
-
Tarazona, S.1
Garcia-Alcalde, F.2
Dopazo, J.3
Ferrer, A.4
Conesa, A.5
-
62
-
-
66949125723
-
Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis
-
Thatcher LF, Manners JM, Kazan K. 2009. Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis. Plant Journal 58: 927-939.
-
(2009)
Plant Journal
, vol.58
, pp. 927-939
-
-
Thatcher, L.F.1
Manners, J.M.2
Kazan, K.3
-
63
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang KC, Chang HY. 2011. Molecular mechanisms of long noncoding RNAs. Molecular Cell 43: 904-914.
-
(2011)
Molecular Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
65
-
-
67649671961
-
Long noncoding RNAs: functional surprises from the RNA world
-
Wilusz JE, Sunwoo H, Spector DL. 2009. Long noncoding RNAs: functional surprises from the RNA world. Genes and Development 23: 1494-1504.
-
(2009)
Genes and Development
, vol.23
, pp. 1494-1504
-
-
Wilusz, J.E.1
Sunwoo, H.2
Spector, D.L.3
-
66
-
-
0242300620
-
Empirical analysis of transcriptional activity in the Arabidopsis genome
-
Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M et al. 2003. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302: 842-846.
-
(2003)
Science
, vol.302
, pp. 842-846
-
-
Yamada, K.1
Lim, J.2
Dale, J.M.3
Chen, H.4
Shinn, P.5
Palm, C.J.6
Southwick, A.M.7
Wu, H.C.8
Kim, C.9
Nguyen, M.10
-
67
-
-
66949124248
-
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
-
Zeller G, Henz SR, Widmer CK, Sachsenberg T, Ratsch G, Weigel D, Laubinger S. 2009. Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant Journal 58: 1068-1082.
-
(2009)
Plant Journal
, vol.58
, pp. 1068-1082
-
-
Zeller, G.1
Henz, S.R.2
Widmer, C.K.3
Sachsenberg, T.4
Ratsch, G.5
Weigel, D.6
Laubinger, S.7
-
68
-
-
84862831103
-
Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function
-
Zhang X, Xia J, Lii YE, Barrera-Figueroa BE, Zhou X, Gao S, Lu L, Niu D, Chen Z, Leung C et al. 2012. Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. Genome Biology 13: R20.
-
(2012)
Genome Biology
, vol.13
-
-
Zhang, X.1
Xia, J.2
Lii, Y.E.3
Barrera-Figueroa, B.E.4
Zhou, X.5
Gao, S.6
Lu, L.7
Niu, D.8
Chen, Z.9
Leung, C.10
-
69
-
-
84870359630
-
Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq
-
Zhu Q-H, Stephen S, Kazan K, Jin G, Fan L, Taylor J, Dennis ES, Helliwell CA, Wang M-B. 2013. Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq. Gene 512: 259-266.
-
(2013)
Gene
, vol.512
, pp. 259-266
-
-
Zhu, Q.-H.1
Stephen, S.2
Kazan, K.3
Jin, G.4
Fan, L.5
Taylor, J.6
Dennis, E.S.7
Helliwell, C.A.8
Wang, M.-B.9
-
70
-
-
84863337856
-
Molecular functions of long non-coding RNAs in plants
-
Zhu Q-H, Wang M-B. 2012. Molecular functions of long non-coding RNAs in plants. Genes 3: 15.
-
(2012)
Genes
, vol.3
, pp. 15
-
-
Zhu, Q.-H.1
Wang, M.-B.2
-
71
-
-
36849089069
-
A natural antisense transcript of the Petunia hybrida Sho gene suggests a role for an antisense mechanism in cytokinin regulation
-
Zubko E, Meyer P. 2007. A natural antisense transcript of the Petunia hybrida Sho gene suggests a role for an antisense mechanism in cytokinin regulation. Plant Journal 52: 1131-1139.
-
(2007)
Plant Journal
, vol.52
, pp. 1131-1139
-
-
Zubko, E.1
Meyer, P.2
|