-
1
-
-
69949085788
-
Genome instability, cancer and aging
-
Maslov A.Y., Vijg J. Genome instability, cancer and aging. Biochim. Biophys. Acta 2009, 1790(10):963-969.
-
(2009)
Biochim. Biophys. Acta
, vol.1790
, Issue.10
, pp. 963-969
-
-
Maslov, A.Y.1
Vijg, J.2
-
2
-
-
84863970074
-
De novo mutations in human genetic disease
-
Veltman J.A., Brunner H.G. De novo mutations in human genetic disease. Nat. Rev. Genet. 2012, 13(8):565-575.
-
(2012)
Nat. Rev. Genet.
, vol.13
, Issue.8
, pp. 565-575
-
-
Veltman, J.A.1
Brunner, H.G.2
-
3
-
-
84899533639
-
Mutation signatures of carcinogen exposure: genome-wide detection and new opportunities for cancer prevention
-
Poon S.L., et al. Mutation signatures of carcinogen exposure: genome-wide detection and new opportunities for cancer prevention. Genome Med. 2014, 6(3):24.
-
(2014)
Genome Med.
, vol.6
, Issue.3
, pp. 24
-
-
Poon, S.L.1
-
4
-
-
70349859881
-
DNA damage, aging, and cancer
-
Hoeijmakers J.H. DNA damage, aging, and cancer. N. Engl. J. Med. 2009, 361(15):1475-1485.
-
(2009)
N. Engl. J. Med.
, vol.361
, Issue.15
, pp. 1475-1485
-
-
Hoeijmakers, J.H.1
-
5
-
-
84873635293
-
Genome instability and aging
-
Vijg J., Suh Y. Genome instability and aging. Annu. Rev. Physiol. 2013, 75:645-668.
-
(2013)
Annu. Rev. Physiol.
, vol.75
, pp. 645-668
-
-
Vijg, J.1
Suh, Y.2
-
6
-
-
0001406666
-
Detection of carcinogens as mutagens in the Salmonella/microsome test: assay of 300 chemicals
-
McCann J., et al. Detection of carcinogens as mutagens in the Salmonella/microsome test: assay of 300 chemicals. Proc. Natl. Acad. Sci. U. S. A. 1975, 72(12):5135-5139.
-
(1975)
Proc. Natl. Acad. Sci. U. S. A.
, vol.72
, Issue.12
, pp. 5135-5139
-
-
McCann, J.1
-
7
-
-
0021923897
-
Development of a standard protocol for in vitro cytogenetic testing with Chinese hamster ovary cells: comparison of results for 22 compounds in two laboratories
-
Galloway S.M., et al. Development of a standard protocol for in vitro cytogenetic testing with Chinese hamster ovary cells: comparison of results for 22 compounds in two laboratories. Environ. Mutagen. 1985, 7(1):1-51.
-
(1985)
Environ. Mutagen.
, vol.7
, Issue.1
, pp. 1-51
-
-
Galloway, S.M.1
-
8
-
-
0023760848
-
Evaluation of the L5178Y mouse lymphoma cell mutagenesis assay: intralaboratory results for sixty-three coded chemicals tested at SRI International
-
Mitchell A.D., Rudd C.J., Caspary W.J. Evaluation of the L5178Y mouse lymphoma cell mutagenesis assay: intralaboratory results for sixty-three coded chemicals tested at SRI International. Environ. Mol. Mutagen. 1988, 12(Suppl. 13):37-101.
-
(1988)
Environ. Mol. Mutagen.
, vol.12
, pp. 37-101
-
-
Mitchell, A.D.1
Rudd, C.J.2
Caspary, W.J.3
-
9
-
-
0016437314
-
The micronucleus test
-
Schmid W. The micronucleus test. Mutat. Res. 1975, 31(1):9-15.
-
(1975)
Mutat. Res.
, vol.31
, Issue.1
, pp. 9-15
-
-
Schmid, W.1
-
10
-
-
0034693730
-
The in vitro micronucleus technique
-
Fenech M. The in vitro micronucleus technique. Mutat. Res. 2000, 455(1-2):81-95.
-
(2000)
Mutat. Res.
, vol.455
, Issue.1-2
, pp. 81-95
-
-
Fenech, M.1
-
11
-
-
0024374202
-
Efficient rescue of integrated shuttle vectors from transgenic mice: a model for studying mutations in vivo
-
Gossen J.A., et al. Efficient rescue of integrated shuttle vectors from transgenic mice: a model for studying mutations in vivo. Proc. Natl. Acad. Sci. U. S. A. 1989, 86(20):7971-7975.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, Issue.20
, pp. 7971-7975
-
-
Gossen, J.A.1
-
12
-
-
0032565545
-
Transgenic assays for mutations and cancer: current status and future perspectives
-
Vijg J., van Steeg H. Transgenic assays for mutations and cancer: current status and future perspectives. Mutat. Res. 1998, 400(1-2):337-354.
-
(1998)
Mutat. Res.
, vol.400
, Issue.1-2
, pp. 337-354
-
-
Vijg, J.1
van Steeg, H.2
-
13
-
-
34250199327
-
A model system for analyzing somatic mutations in Drosophila melanogaster
-
Garcia A.M., et al. A model system for analyzing somatic mutations in Drosophila melanogaster. Nat. Methods 2007, 4(5):401-403.
-
(2007)
Nat. Methods
, vol.4
, Issue.5
, pp. 401-403
-
-
Garcia, A.M.1
-
14
-
-
0030033714
-
Evaluation of a plasmid-based transgenic mouse model for detecting in vivo mutations
-
Dolle M.E., et al. Evaluation of a plasmid-based transgenic mouse model for detecting in vivo mutations. Mutagenesis 1996, 11(1):111-118.
-
(1996)
Mutagenesis
, vol.11
, Issue.1
, pp. 111-118
-
-
Dolle, M.E.1
-
16
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
-
Kanagawa T. Bias and artifacts in multitemplate polymerase chain reactions (PCR). J. Biosci. Bioeng. 2003, 96(4):317-323.
-
(2003)
J. Biosci. Bioeng.
, vol.96
, Issue.4
, pp. 317-323
-
-
Kanagawa, T.1
-
17
-
-
0025981359
-
Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
-
Shibutani S., Takeshita M., Grollman A.P. Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature 1991, 349(6308):431-434.
-
(1991)
Nature
, vol.349
, Issue.6308
, pp. 431-434
-
-
Shibutani, S.1
Takeshita, M.2
Grollman, A.P.3
-
18
-
-
33748783644
-
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
-
Stiller M., et al. Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc. Natl. Acad. Sci. U. S. A. 2006, 103(37):13578-13584.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, Issue.37
, pp. 13578-13584
-
-
Stiller, M.1
-
19
-
-
84877266636
-
Updating benchtop sequencing performance comparison
-
Junemann S., et al. Updating benchtop sequencing performance comparison. Nat. Biotechnol. 2013, 31(4):294-296.
-
(2013)
Nat. Biotechnol.
, vol.31
, Issue.4
, pp. 294-296
-
-
Junemann, S.1
-
20
-
-
84865979581
-
Detection of ultra-rare mutations by next-generation sequencing
-
Schmitt M.W., et al. Detection of ultra-rare mutations by next-generation sequencing. Proc. Natl. Acad. Sci. U. S. A. 2012, 109(36):14508-14513.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, Issue.36
, pp. 14508-14513
-
-
Schmitt, M.W.1
-
21
-
-
67651089508
-
Improved protocols for the illumina genome analyzer sequencing system
-
(Chapter 18: Unit 18.2)
-
Quail M.A., Swerdlow H., Turner D.J. Improved protocols for the illumina genome analyzer sequencing system. Curr. Protoc. Hum. Genet. 2009, (Chapter 18: Unit 18.2).
-
(2009)
Curr. Protoc. Hum. Genet.
-
-
Quail, M.A.1
Swerdlow, H.2
Turner, D.J.3
-
22
-
-
84863338168
-
Direct, genome-wide assessment of DNA mutations in single cells
-
Gundry M., et al. Direct, genome-wide assessment of DNA mutations in single cells. Nucleic Acids Res. 2012, 40(5):2032-2040.
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.5
, pp. 2032-2040
-
-
Gundry, M.1
-
23
-
-
83555173382
-
Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants
-
Gundry M., Vijg J. Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants. Mutat. Res. 2012, 729(1-2):1-15.
-
(2012)
Mutat. Res.
, vol.729
, Issue.1-2
, pp. 1-15
-
-
Gundry, M.1
Vijg, J.2
-
24
-
-
0034830935
-
Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification
-
Dean F.B., et al. Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 2001, 11(6):1095-1099.
-
(2001)
Genome Res.
, vol.11
, Issue.6
, pp. 1095-1099
-
-
Dean, F.B.1
-
25
-
-
18344396798
-
Comprehensive human genome amplification using multiple displacement amplification
-
Dean F.B., et al. Comprehensive human genome amplification using multiple displacement amplification. Proc. Natl. Acad. Sci. U. S. A. 2002, 99(8):5261-5266.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, Issue.8
, pp. 5261-5266
-
-
Dean, F.B.1
-
26
-
-
33646486735
-
Towards the analysis of the genomes of single cells: further characterisation of the multiple displacement amplification
-
Panelli S., et al. Towards the analysis of the genomes of single cells: further characterisation of the multiple displacement amplification. Gene 2006, 372:1-7.
-
(2006)
Gene
, vol.372
, pp. 1-7
-
-
Panelli, S.1
-
27
-
-
39149094948
-
Single-cell isolation from cell suspensions and whole genome amplification from single cells to provide templates for CGH analysis
-
Geigl J.B., Speicher M.R. Single-cell isolation from cell suspensions and whole genome amplification from single cells to provide templates for CGH analysis. Nat. Protoc. 2007, 2(12):3173-3184.
-
(2007)
Nat. Protoc.
, vol.2
, Issue.12
, pp. 3173-3184
-
-
Geigl, J.B.1
Speicher, M.R.2
-
28
-
-
3242876652
-
One by one: single molecule tools for genomics
-
Dear P.H. One by one: single molecule tools for genomics. Brief Funct. Genomic Proteomic 2003, 1(4):397-416.
-
(2003)
Brief Funct. Genomic Proteomic
, vol.1
, Issue.4
, pp. 397-416
-
-
Dear, P.H.1
-
29
-
-
0012156457
-
Specific-locus test shows ethylnitrosourea to be the most potent mutagen in the mouse
-
Russell W.L., et al. Specific-locus test shows ethylnitrosourea to be the most potent mutagen in the mouse. Proc. Natl. Acad. Sci. U. S. A. 1979, 76(11):5818-5819.
-
(1979)
Proc. Natl. Acad. Sci. U. S. A.
, vol.76
, Issue.11
, pp. 5818-5819
-
-
Russell, W.L.1
-
30
-
-
0034425715
-
Genome-wide, large-scale production of mutant mice by ENU mutagenesis
-
Hrabe de Angelis M.H., et al. Genome-wide, large-scale production of mutant mice by ENU mutagenesis. Nat. Genet. 2000, 25(4):444-447.
-
(2000)
Nat. Genet.
, vol.25
, Issue.4
, pp. 444-447
-
-
Hrabe de Angelis, M.H.1
-
31
-
-
0034727107
-
An SNP map of the human genome generated by reduced representation shotgun sequencing
-
Altshuler D., et al. An SNP map of the human genome generated by reduced representation shotgun sequencing. Nature 2000, 407(6803):513-516.
-
(2000)
Nature
, vol.407
, Issue.6803
, pp. 513-516
-
-
Altshuler, D.1
-
32
-
-
79959353421
-
Detection and quantification of rare mutations with massively parallel sequencing
-
Kinde I., et al. Detection and quantification of rare mutations with massively parallel sequencing. Proc. Natl. Acad. Sci. U. S. A. 2011, 108(23):9530-9535.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, Issue.23
, pp. 9530-9535
-
-
Kinde, I.1
-
33
-
-
36849060549
-
Encoding PCR products with batch-stamps and barcodes
-
McCloskey M.L., et al. Encoding PCR products with batch-stamps and barcodes. Biochem. Genet. 2007, 45(11-12):761-767.
-
(2007)
Biochem. Genet.
, vol.45
, Issue.11-12
, pp. 761-767
-
-
McCloskey, M.L.1
-
34
-
-
0026328236
-
Fidelity of mammalian DNA replication and replicative DNA polymerases
-
Thomas D.C., et al. Fidelity of mammalian DNA replication and replicative DNA polymerases. Biochemistry 1991, 30(51):11751-11759.
-
(1991)
Biochemistry
, vol.30
, Issue.51
, pp. 11751-11759
-
-
Thomas, D.C.1
-
35
-
-
84889659729
-
High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing
-
Lou D.I., et al. High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing. Proc. Natl. Acad. Sci. U. S. A. 2013, 110(49):19872-19877.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, Issue.49
, pp. 19872-19877
-
-
Lou, D.I.1
-
36
-
-
0029079406
-
Rolling replication of short DNA circles
-
Fire A., Xu S.Q. Rolling replication of short DNA circles. Proc. Natl. Acad. Sci. U. S. A. 1995, 92(10):4641-4645.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, Issue.10
, pp. 4641-4645
-
-
Fire, A.1
Xu, S.Q.2
-
37
-
-
0017392934
-
DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli
-
Lindahl T., et al. DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli. J. Biol. Chem. 1977, 252(10):3286-3294.
-
(1977)
J. Biol. Chem.
, vol.252
, Issue.10
, pp. 3286-3294
-
-
Lindahl, T.1
-
38
-
-
0028305008
-
Substrate specificity of Fpg protein. Recognition and cleavage of oxidatively damaged DNA
-
Tchou J., et al. Substrate specificity of Fpg protein. Recognition and cleavage of oxidatively damaged DNA. J. Biol. Chem. 1994, 269(21):15318-15324.
-
(1994)
J. Biol. Chem.
, vol.269
, Issue.21
, pp. 15318-15324
-
-
Tchou, J.1
-
39
-
-
84867716702
-
Structural mutations in cancer: mechanistic and functional insights
-
Inaki K., Liu E.T. Structural mutations in cancer: mechanistic and functional insights. Trends Genet. 2012, 28(11):550-559.
-
(2012)
Trends Genet.
, vol.28
, Issue.11
, pp. 550-559
-
-
Inaki, K.1
Liu, E.T.2
-
40
-
-
33947581390
-
The impact of translocations and gene fusions on cancer causation
-
Mitelman F., Johansson B., Mertens F. The impact of translocations and gene fusions on cancer causation. Nat. Rev. Cancer 2007, 7(4):233-245.
-
(2007)
Nat. Rev. Cancer
, vol.7
, Issue.4
, pp. 233-245
-
-
Mitelman, F.1
Johansson, B.2
Mertens, F.3
-
41
-
-
0037198009
-
Large genome rearrangements as a primary cause of aging
-
Vijg J., Dolle M.E. Large genome rearrangements as a primary cause of aging. Mech. Ageing Dev. 2002, 123(8):907-915.
-
(2002)
Mech. Ageing Dev.
, vol.123
, Issue.8
, pp. 907-915
-
-
Vijg, J.1
Dolle, M.E.2
-
42
-
-
69549116107
-
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
-
Chen K., et al. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods 2009, 6(9):677-681.
-
(2009)
Nat. Methods
, vol.6
, Issue.9
, pp. 677-681
-
-
Chen, K.1
-
43
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
Korbel J.O., et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 2007, 318(5849):420-426.
-
(2007)
Science
, vol.318
, Issue.5849
, pp. 420-426
-
-
Korbel, J.O.1
-
44
-
-
84867854395
-
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data
-
Zhang J., Wang J., Wu Y. An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data. BMC Bioinform. 2012, 13(Suppl. 6):S6.
-
(2012)
BMC Bioinform.
, vol.13
, pp. S6
-
-
Zhang, J.1
Wang, J.2
Wu, Y.3
-
45
-
-
79960572201
-
Identification of genomic indels and structural variations using split reads
-
Zhang Z.D., et al. Identification of genomic indels and structural variations using split reads. BMC Genomics 2011, 12:375.
-
(2011)
BMC Genomics
, vol.12
, pp. 375
-
-
Zhang, Z.D.1
-
46
-
-
84870460670
-
PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants
-
Jiang Y., Wang Y., Brudno M. PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants. Bioinformatics 2012, 28(20):2576-2583.
-
(2012)
Bioinformatics
, vol.28
, Issue.20
, pp. 2576-2583
-
-
Jiang, Y.1
Wang, Y.2
Brudno, M.3
-
47
-
-
84866440781
-
DELLY: structural variant discovery by integrated paired-end and split-read analysis
-
Rausch T., et al. DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics 2012, 28(18):i333-i339.
-
(2012)
Bioinformatics
, vol.28
, Issue.18
, pp. i333-i339
-
-
Rausch, T.1
-
48
-
-
84893864009
-
Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches
-
Abel H.J., Duncavage E.J. Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches. Cancer Genet. 2013, 206(12):432-440.
-
(2013)
Cancer Genet.
, vol.206
, Issue.12
, pp. 432-440
-
-
Abel, H.J.1
Duncavage, E.J.2
-
49
-
-
57049122389
-
A large genome center's improvements to the Illumina sequencing system
-
Quail M.A., et al. A large genome center's improvements to the Illumina sequencing system. Nat. Methods 2008, 5(12):1005-1010.
-
(2008)
Nat. Methods
, vol.5
, Issue.12
, pp. 1005-1010
-
-
Quail, M.A.1
-
50
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
Adey A., et al. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol. 2010, 11(12):pR119.
-
(2010)
Genome Biol.
, vol.11
, Issue.12
, pp. pR119
-
-
Adey, A.1
-
51
-
-
60149112271
-
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
-
Rozowsky J., et al. PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. Nat. Biotechnol. 2009, 27(1):66-75.
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.1
, pp. 66-75
-
-
Rozowsky, J.1
-
52
-
-
0028856635
-
Plasmid-based transgenic mouse model for studying in vivo mutations
-
Boerrigter M.E., et al. Plasmid-based transgenic mouse model for studying in vivo mutations. Nature 1995, 377(6550):657-659.
-
(1995)
Nature
, vol.377
, Issue.6550
, pp. 657-659
-
-
Boerrigter, M.E.1
-
53
-
-
42749095519
-
Detecting genotoxic effects of potential clastogens: an in vivo study using the transgenic lacZ plasmid and the MutaMouse model
-
Mahabir A.G., et al. Detecting genotoxic effects of potential clastogens: an in vivo study using the transgenic lacZ plasmid and the MutaMouse model. Mutat. Res. 2008, 652(2):151-157.
-
(2008)
Mutat. Res.
, vol.652
, Issue.2
, pp. 151-157
-
-
Mahabir, A.G.1
-
55
-
-
56549124173
-
DNA-repair-deficient Rad54/Rad54B mice are more sensitive to clastogens than wild-type mice
-
Mahabir A.G., et al. DNA-repair-deficient Rad54/Rad54B mice are more sensitive to clastogens than wild-type mice. Toxicol. Lett. 2008, 183(1-3):112-117.
-
(2008)
Toxicol. Lett.
, vol.183
, Issue.1-3
, pp. 112-117
-
-
Mahabir, A.G.1
-
56
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437(7057):376-380.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
|