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Volumn 34, Issue , 2015, Pages 98-104

Advances and current limitations in transcript-level control of gene expression

Author keywords

[No Author keywords available]

Indexed keywords

GENES; RECOMBINANT PROTEINS; ROBUSTNESS (CONTROL SYSTEMS); TRANSCRIPTION;

EID: 84920278608     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2014.12.015     Document Type: Review
Times cited : (52)

References (46)
  • 2
    • 84901499344 scopus 로고    scopus 로고
    • Recombinant protein production in bacterial hosts
    • Overton T.W. Recombinant protein production in bacterial hosts. Drug Discovery Today 2014, 19:590-601.
    • (2014) Drug Discovery Today , vol.19 , pp. 590-601
    • Overton, T.W.1
  • 3
    • 84862207929 scopus 로고    scopus 로고
    • Expanding the chemical palate of cells by combining systems biology and metabolic engineering
    • Curran K., Alper H.S. Expanding the chemical palate of cells by combining systems biology and metabolic engineering. Metab Eng 2012, 14:289-297.
    • (2012) Metab Eng , vol.14 , pp. 289-297
    • Curran, K.1    Alper, H.S.2
  • 4
    • 84887624961 scopus 로고    scopus 로고
    • Design-based re-engineering of biosynthetic gene clusters: plug-and-play in practice
    • Frasch H.-J., Medema M.H., Takano E., Breitling R. Design-based re-engineering of biosynthetic gene clusters: plug-and-play in practice. Curr Opin Biotechnol 2013, 24:1144-1150.
    • (2013) Curr Opin Biotechnol , vol.24 , pp. 1144-1150
    • Frasch, H.-J.1    Medema, M.H.2    Takano, E.3    Breitling, R.4
  • 7
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis H.M., Mirsky E., Voigt C. Automated design of synthetic ribosome binding sites to control protein expression. Nat Biotechnol 2009, 27:946-950.
    • (2009) Nat Biotechnol , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.2    Voigt, C.3
  • 8
    • 84870851210 scopus 로고    scopus 로고
    • Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency
    • Woo S., Yang J-s, Kim I., Yang J., Eun B., Kim S., Yeol G. Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency. Metab Eng 2013, 15:67-74.
    • (2013) Metab Eng , vol.15 , pp. 67-74
    • Woo, S.1    Yang, J-s2    Kim, I.3    Yang, J.4    Eun, B.5    Kim, S.6    Yeol, G.7
  • 9
    • 77957797837 scopus 로고    scopus 로고
    • RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression
    • Na D., Lee D. RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression. Bioinformatics (Oxford, England) 2010, 26:2633-2634.
    • (2010) Bioinformatics (Oxford, England) , vol.26 , pp. 2633-2634
    • Na, D.1    Lee, D.2
  • 10
    • 84899155758 scopus 로고    scopus 로고
    • A condition-specific codon optimization approach for improved heterologous gene expression in Saccharomyces cerevisiae
    • Lanza A.M., Curran K., Rey L.G., Alper H.S. A condition-specific codon optimization approach for improved heterologous gene expression in Saccharomyces cerevisiae. BMC Syst Biol 2014, 8:33.
    • (2014) BMC Syst Biol , vol.8 , pp. 33
    • Lanza, A.M.1    Curran, K.2    Rey, L.G.3    Alper, H.S.4
  • 11
    • 84866744379 scopus 로고    scopus 로고
    • Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters
    • Blazeck J., Garg R., Reed B., Alper H.S. Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters. Biotechnol Bioeng 2012, 109:2884-2895.
    • (2012) Biotechnol Bioeng , vol.109 , pp. 2884-2895
    • Blazeck, J.1    Garg, R.2    Reed, B.3    Alper, H.S.4
  • 17
    • 84876355027 scopus 로고    scopus 로고
    • Coordinated induction of multi-gene pathways in Saccharomyces cerevisiae
    • Liang J., Ning J.C., Zhao H. Coordinated induction of multi-gene pathways in Saccharomyces cerevisiae. Nucleic Acids Res 2013, 41:e54.
    • (2013) Nucleic Acids Res , vol.41
    • Liang, J.1    Ning, J.C.2    Zhao, H.3
  • 18
    • 83055177124 scopus 로고    scopus 로고
    • Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach
    • Blazeck J., Liu L., Redden H., Alper H. Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach. Appl Environ Microbiol 2011, 77:7905-7914.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7905-7914
    • Blazeck, J.1    Liu, L.2    Redden, H.3    Alper, H.4
  • 22
    • 84879681227 scopus 로고    scopus 로고
    • Characterization of 582 natural and synthetic terminators and quantification of their design constraints
    • Chen Y.-J., Liu P., Nielsen A.K., Brophy J.N., Clancy K., Peterson T., Voigt C. Characterization of 582 natural and synthetic terminators and quantification of their design constraints. Nat Methods 2013, 10:659-664.
    • (2013) Nat Methods , vol.10 , pp. 659-664
    • Chen, Y.-J.1    Liu, P.2    Nielsen, A.K.3    Brophy, J.N.4    Clancy, K.5    Peterson, T.6    Voigt, C.7
  • 23
    • 79961060611 scopus 로고    scopus 로고
    • Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay
    • Munchel S.E., Shultzaberger R.K., Takizawa N., Weis K. Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay. Mol Biol Cell 2011, 22:2787-2795.
    • (2011) Mol Biol Cell , vol.22 , pp. 2787-2795
    • Munchel, S.E.1    Shultzaberger, R.K.2    Takizawa, N.3    Weis, K.4
  • 24
    • 84881004490 scopus 로고    scopus 로고
    • Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications
    • Curran K., Karim A.S., Gupta A., Alper H.S. Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications. Metab Eng 2013, 19:88-97.
    • (2013) Metab Eng , vol.19 , pp. 88-97
    • Curran, K.1    Karim, A.S.2    Gupta, A.3    Alper, H.S.4
  • 25
    • 84888844326 scopus 로고    scopus 로고
    • Characterization of five terminator regions that increase the protein yield of a transgene in Saccharomyces cerevisiae
    • Ito Y., Yamanishi M., Ikeuchi A., Imamura C., Tokuhiro K., Kitagawa T., Matsuyama T. Characterization of five terminator regions that increase the protein yield of a transgene in Saccharomyces cerevisiae. J Biotechnol 2013, 168:486-492.
    • (2013) J Biotechnol , vol.168 , pp. 486-492
    • Ito, Y.1    Yamanishi, M.2    Ikeuchi, A.3    Imamura, C.4    Tokuhiro, K.5    Kitagawa, T.6    Matsuyama, T.7
  • 26
    • 84879762383 scopus 로고    scopus 로고
    • A genome-wide activity assessment of terminator regions in Saccharomyces cerevisiae provides a "terminatome" toolbox
    • Yamanishi M., Ito Y., Kintaka R., Imamura C., Katahira S., Ikeuchi A., Moriya H., Matsuyama T. A genome-wide activity assessment of terminator regions in Saccharomyces cerevisiae provides a "terminatome" toolbox. ACS Synth Biol 2013, 2:337-347.
    • (2013) ACS Synth Biol , vol.2 , pp. 337-347
    • Yamanishi, M.1    Ito, Y.2    Kintaka, R.3    Imamura, C.4    Katahira, S.5    Ikeuchi, A.6    Moriya, H.7    Matsuyama, T.8
  • 27
    • 84866953925 scopus 로고    scopus 로고
    • Modular control of multiple pathways using engineered orthogonal T7 polymerases
    • Temme K., Hill R., Segall-Shapiro T.H., Moser F., Voigt C. Modular control of multiple pathways using engineered orthogonal T7 polymerases. Nucleic Acids Res 2012, 40:8773-8781.
    • (2012) Nucleic Acids Res , vol.40 , pp. 8773-8781
    • Temme, K.1    Hill, R.2    Segall-Shapiro, T.H.3    Moser, F.4    Voigt, C.5
  • 28
    • 84886488970 scopus 로고    scopus 로고
    • Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas
    • Farzadfard F., Perli S.D., Lu T.K. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol 2013, 2:604-613.
    • (2013) ACS Synth Biol , vol.2 , pp. 604-613
    • Farzadfard, F.1    Perli, S.D.2    Lu, T.K.3
  • 30
    • 80051715222 scopus 로고    scopus 로고
    • Re-engineering multicloning sites for function and convenience
    • Crook N.C., Freeman E.S., Alper H.S. Re-engineering multicloning sites for function and convenience. Nucleic Acids Res 2011, 39:e92.
    • (2011) Nucleic Acids Res , vol.39
    • Crook, N.C.1    Freeman, E.S.2    Alper, H.S.3
  • 31
    • 84872857159 scopus 로고    scopus 로고
    • Transcription regulation of a yeast gene from a downstream location
    • Shetty A., Swaminathan A., Lopes J.M. Transcription regulation of a yeast gene from a downstream location. J Mol Biol 2013, 425:457-465.
    • (2013) J Mol Biol , vol.425 , pp. 457-465
    • Shetty, A.1    Swaminathan, A.2    Lopes, J.M.3
  • 32
    • 84899682637 scopus 로고    scopus 로고
    • Gene position more strongly influences cell-free protein expression from operons than t7 transcriptional promoter strength
    • Chizzolini F., Forlin M., Cecchi D., Mansy S.S. Gene position more strongly influences cell-free protein expression from operons than t7 transcriptional promoter strength. ACS Synth Biol 2014, 3:363-371.
    • (2014) ACS Synth Biol , vol.3 , pp. 363-371
    • Chizzolini, F.1    Forlin, M.2    Cecchi, D.3    Mansy, S.S.4
  • 33
    • 84892778854 scopus 로고    scopus 로고
    • Suppression of expression between adjacent genes within heterologous modules in yeast
    • Lee T.J., Parikh R.Y., Weitz J.S., Kim H.D. Suppression of expression between adjacent genes within heterologous modules in yeast. G3 (Bethesda, MD) 2014, 4:109-116.
    • (2014) G3 (Bethesda, MD) , vol.4 , pp. 109-116
    • Lee, T.J.1    Parikh, R.Y.2    Weitz, J.S.3    Kim, H.D.4
  • 34
    • 58449118337 scopus 로고    scopus 로고
    • The organization of the bacterial genome
    • Rocha E.P.C. The organization of the bacterial genome. Annu Rev Genet 2008, 42:211-233.
    • (2008) Annu Rev Genet , vol.42 , pp. 211-233
    • Rocha, E.P.C.1
  • 35
    • 70449686525 scopus 로고    scopus 로고
    • Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae
    • Flagfeldt D.B., Siewers V., Huang L., Nielsen J. Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae. Yeast 2009, 545-551.
    • (2009) Yeast , pp. 545-551
    • Flagfeldt, D.B.1    Siewers, V.2    Huang, L.3    Nielsen, J.4
  • 37
    • 84859206826 scopus 로고    scopus 로고
    • A regulatory role for repeated decoy transcription factor binding sites in target gene expression
    • Lee T.-H., Maheshri N. A regulatory role for repeated decoy transcription factor binding sites in target gene expression. Mol Syst Biol 2012, 8:576.
    • (2012) Mol Syst Biol , vol.8 , pp. 576
    • Lee, T.-H.1    Maheshri, N.2
  • 38
    • 84872415347 scopus 로고    scopus 로고
    • Characterization of plasmid burden and copy number in Saccharomyces cerevisiae for optimization of metabolic engineering applications
    • Karim A.S., Curran K., Alper H.S. Characterization of plasmid burden and copy number in Saccharomyces cerevisiae for optimization of metabolic engineering applications. FEMS Yeast Res 2013, 13:107-116.
    • (2013) FEMS Yeast Res , vol.13 , pp. 107-116
    • Karim, A.S.1    Curran, K.2    Alper, H.S.3
  • 39
    • 0034496492 scopus 로고    scopus 로고
    • Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria
    • Jones K.L., Kim S.W., Keasling J.D. Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria. Metab Eng 2000, 2:328-338.
    • (2000) Metab Eng , vol.2 , pp. 328-338
    • Jones, K.L.1    Kim, S.W.2    Keasling, J.D.3
  • 41
    • 84920260857 scopus 로고    scopus 로고
    • A load driver device for engineering modularity in biological networks
    • Mishra D., Rivera P.M., Lin A., Del Vecchio D., Weiss R. A load driver device for engineering modularity in biological networks. Nat Biotechnol 2014, 32:1268-1275.
    • (2014) Nat Biotechnol , vol.32 , pp. 1268-1275
    • Mishra, D.1    Rivera, P.M.2    Lin, A.3    Del Vecchio, D.4    Weiss, R.5
  • 42
    • 84890395226 scopus 로고    scopus 로고
    • Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay
    • Lee M.E., Aswani A., Han A.S., Tomlin C.J., Dueber J.E. Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay. Nucleic Acids Res 2013, 41:10668-10678.
    • (2013) Nucleic Acids Res , vol.41 , pp. 10668-10678
    • Lee, M.E.1    Aswani, A.2    Han, A.S.3    Tomlin, C.J.4    Dueber, J.E.5
  • 43
    • 33747453473 scopus 로고    scopus 로고
    • Insulators: exploiting transcriptional and epigenetic mechanisms
    • Gaszner M., Felsenfeld G. Insulators: exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 2006, 7:703-713.
    • (2006) Nat Rev Genet , vol.7 , pp. 703-713
    • Gaszner, M.1    Felsenfeld, G.2
  • 44
    • 84899415536 scopus 로고    scopus 로고
    • CTCF: an architectural protein bridging genome topology and function
    • Ong C.-T., Corces V.G. CTCF: an architectural protein bridging genome topology and function. Nat Rev Genet 2014, 15:234-246.
    • (2014) Nat Rev Genet , vol.15 , pp. 234-246
    • Ong, C.-T.1    Corces, V.G.2
  • 45
    • 79951565301 scopus 로고    scopus 로고
    • Design, construction and characterization of a set of insulated bacterial promoters
    • Davis J.H., Rubin A.J., Sauer R.T. Design, construction and characterization of a set of insulated bacterial promoters. Nucleic Acids Res 2011, 39:1131-1141.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1131-1141
    • Davis, J.H.1    Rubin, A.J.2    Sauer, R.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.