메뉴 건너뛰기




Volumn 43, Issue 10, 2015, Pages 5065-5080

Local DNA dynamics shape mutational patterns of mononucleotide repeats in human genomes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA DAMAGE; DNA FLANKING REGION; DNA MODIFICATION; DNA REPAIR; DNA REPLICATION; DNA SEQUENCE; GENE EXPRESSION; GENETIC VARIABILITY; HUMAN; HUMAN GENOME; INDEL MUTATION; MOLECULAR DYNAMICS; MONONUCLEOTIDE REPEAT; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; QUANTUM MECHANICS; SINGLE NUCLEOTIDE VARIANT; BASE PAIRING; CHEMISTRY; DISEASES; DNA BASE COMPOSITION; GENETIC TRANSCRIPTION; GENETICS; MOLECULAR EVOLUTION; MUTATION; NUCLEOSOME;

EID: 84931274833     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv364     Document Type: Article
Times cited : (16)

References (65)
  • 2
    • 84925497848 scopus 로고    scopus 로고
    • Hypermutation in human cancer genomes: Footprints and mechanisms
    • Roberts, S.A. and Gordenin, D.A. (2014) Hypermutation in human cancer genomes: footprints and mechanisms. Nat. Rev. Cancer, 14, 786-800.
    • (2014) Nat. Rev. Cancer , vol.14 , pp. 786-800
    • Roberts, S.A.1    Gordenin, D.A.2
  • 3
    • 84906303775 scopus 로고    scopus 로고
    • Mechanisms underlying mutational signatures in human cancers
    • Helleday, T., Eshtad, S. and Nik-Zainal, S. (2014) Mechanisms underlying mutational signatures in human cancers. Nat. Rev. Genet., 15, 585-598.
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 585-598
    • Helleday, T.1    Eshtad, S.2    Nik-Zainal, S.3
  • 4
    • 84895784747 scopus 로고    scopus 로고
    • Mechanisms of base substitution mutagenesis in cancer genomes
    • Bacolla, A., Cooper, D.N. and Vasquez, K.M. (2014) Mechanisms of base substitution mutagenesis in cancer genomes. Genes, 5, 108-146.
    • (2014) Genes , vol.5 , pp. 108-146
    • Bacolla, A.1    Cooper, D.N.2    Vasquez, K.M.3
  • 5
    • 84872287592 scopus 로고    scopus 로고
    • Regulation of AID, the B-cell genome mutator
    • Keim, C., Kazadi, D., Rothschild, G. and Basu, U. (2013) Regulation of AID, the B-cell genome mutator. Genes Dev., 27, 1-17.
    • (2013) Genes Dev. , vol.27 , pp. 1-17
    • Keim, C.1    Kazadi, D.2    Rothschild, G.3    Basu, U.4
  • 8
    • 84255176375 scopus 로고    scopus 로고
    • UV wavelength-dependent DNA damage and human non-melanoma and melanoma skin cancer
    • Pfeifer, G.P. and Besaratinia, A. (2012) UV wavelength-dependent DNA damage and human non-melanoma and melanoma skin cancer. Photochem. Photobiol. Sci., 11, 90-97.
    • (2012) Photochem. Photobiol. Sci. , vol.11 , pp. 90-97
    • Pfeifer, G.P.1    Besaratinia, A.2
  • 13
    • 84905457336 scopus 로고    scopus 로고
    • Microsatellite interruptions stabilize primate genomes and exist as population-specifc single nucleotide polymorphisms within individual human genomes
    • Ananda, G., Hile, S.E., Breski, A., Wang, Y., Kelkar, Y., Makova, K.D. and Eckert, K.A. (2014) Microsatellite interruptions stabilize primate genomes and exist as population-specifc single nucleotide polymorphisms within individual human genomes. PLoS Genet., 10, e1004498.
    • (2014) PLoS Genet. , vol.10 , pp. e1004498
    • Ananda, G.1    Hile, S.E.2    Breski, A.3    Wang, Y.4    Kelkar, Y.5    Makova, K.D.6    Eckert, K.A.7
  • 14
    • 84873559405 scopus 로고    scopus 로고
    • Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements
    • Sawaya, S., Bagshaw, A., Buschiazzo, E., Kumar, P., Chowdhury, S., Black, M.A. and Gemmell, N. (2013) Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements. PLoS One, 8, e54710.
    • (2013) PLoS One , vol.8 , pp. e54710
    • Sawaya, S.1    Bagshaw, A.2    Buschiazzo, E.3    Kumar, P.4    Chowdhury, S.5    Black, M.A.6    Gemmell, N.7
  • 15
    • 84887924524 scopus 로고    scopus 로고
    • The landscape of microsatellite instability in colorectal and endometrial cancer genomes
    • Kim, T.M., Laird, P.W. and Park, P.J. (2013) The landscape of microsatellite instability in colorectal and endometrial cancer genomes. Cell, 155, 858-868.
    • (2013) Cell , vol.155 , pp. 858-868
    • Kim, T.M.1    Laird, P.W.2    Park, P.J.3
  • 17
    • 84870013758 scopus 로고    scopus 로고
    • Molecular dynamics study of the role of the spine of hydration in DNA A-tracts in determining nucleosome occupancy
    • Zhu, X. and Schatz, G.C. (2012) Molecular dynamics study of the role of the spine of hydration in DNA A-tracts in determining nucleosome occupancy. J. Phys. Chem. B, 116, 13672-13681.
    • (2012) J. Phys. Chem. B , vol.116 , pp. 13672-13681
    • Zhu, X.1    Schatz, G.C.2
  • 20
    • 36449003554 scopus 로고
    • Constant-pressure molecular-dynamics algorithms
    • Martyna, G.J., Tobias, D.J. and Klein, M.L. (1994) Constant-pressure molecular-dynamics algorithms. J. Chem. Phys., 101, 4177-4189.
    • (1994) J. Chem. Phys. , vol.101 , pp. 4177-4189
    • Martyna, G.J.1    Tobias, D.J.2    Klein, M.L.3
  • 21
    • 0017100947 scopus 로고
    • Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
    • Warshel, A. and Levitt, M. (1976) Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme. J. Mol. Biol., 103, 227-249.
    • (1976) J. Mol. Biol. , vol.103 , pp. 227-249
    • Warshel, A.1    Levitt, M.2
  • 22
    • 33646205963 scopus 로고    scopus 로고
    • An effcient real space multigrid QM/MM electrostatic coupling
    • Laino, T., Mohamed, F., Laio, A. and Parrinello, M. (2005) An effcient real space multigrid QM/MM electrostatic coupling. J. Chem. Theory Comput., 1, 1176-1184.
    • (2005) J. Chem. Theory Comput. , vol.1 , pp. 1176-1184
    • Laino, T.1    Mohamed, F.2    Laio, A.3    Parrinello, M.4
  • 23
    • 0042113153 scopus 로고
    • Self-consistent equations including exchange and correlation effects
    • Kohn, W. and Sham, L.J. (1965) Self-consistent equations including exchange and correlation effects. Phys. Rev., 140, A1133-A1138.
    • (1965) Phys. Rev. , vol.140 , pp. A1133-A1138
    • Kohn, W.1    Sham, L.J.2
  • 24
    • 15344345714 scopus 로고    scopus 로고
    • Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach
    • VandeVondele, J., Krack, M., Mohamed, F., Parrinello, M., Chassaing, T. and Hutter, J. (2005) Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach. Comput. Phys. Commun., 167, 103-128.
    • (2005) Comput. Phys. Commun. , vol.167 , pp. 103-128
    • Vandevondele, J.1    Krack, M.2    Mohamed, F.3    Parrinello, M.4    Chassaing, T.5    Hutter, J.6
  • 25
    • 0000160164 scopus 로고    scopus 로고
    • Separable dual-space Gaussian pseudopotentials
    • Goedecker, S., Teter, M. and Hutter, J. (1996) Separable dual-space Gaussian pseudopotentials. Phys. Rev. B, 54, 1703-1710.
    • (1996) Phys. Rev. B , vol.54 , pp. 1703-1710
    • Goedecker, S.1    Teter, M.2    Hutter, J.3
  • 26
    • 4243943295 scopus 로고    scopus 로고
    • Generalized gradient approximation made simple
    • Perdew, J.P., Burke, K. and Ernzerhof, M. (1996) Generalized gradient approximation made simple. Phys. Rev. Lett., 77, 3865-3868.
    • (1996) Phys. Rev. Lett. , vol.77 , pp. 3865-3868
    • Perdew, J.P.1    Burke, K.2    Ernzerhof, M.3
  • 27
    • 26444474547 scopus 로고
    • Gaussian basis sets for use in correlated molecular calculations. IV. Calculation of static electrical response properties
    • Woon, D.E. and Dunning, T.H. (1994) Gaussian basis sets for use in correlated molecular calculations. IV. Calculation of static electrical response properties. J. Chem. Phys., 100, 2975-2988.
    • (1994) J. Chem. Phys. , vol.100 , pp. 2975-2988
    • Woon, D.E.1    Dunning, T.H.2
  • 28
    • 36449004033 scopus 로고
    • Electrostatic decoupling of periodic images of plane-wave-expanded densities and derived atomic point charges
    • Blöchl, P.E. (1995) Electrostatic decoupling of periodic images of plane-wave-expanded densities and derived atomic point charges. J. Chem. Phys., 103, 7422-7428.
    • (1995) J. Chem. Phys. , vol.103 , pp. 7422-7428
    • Blöchl, P.E.1
  • 29
    • 79953313618 scopus 로고    scopus 로고
    • Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome
    • Siddle, K.J., Goodship, J.A., Keavney, B. and Santibanez-Koref, M.F. (2011) Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome. Bioinformatics, 27, 895-898.
    • (2011) Bioinformatics , vol.27 , pp. 895-898
    • Siddle, K.J.1    Goodship, J.A.2    Keavney, B.3    Santibanez-Koref, M.F.4
  • 34
    • 84877247843 scopus 로고    scopus 로고
    • Human polymerase kappa uses a template-slippage deletion mechanism, but can realign the slipped strands to favour base substitution mutations over deletions
    • Mukherjee, P., Lahiri, I. and Pata, J.D. (2013) Human polymerase kappa uses a template-slippage deletion mechanism, but can realign the slipped strands to favour base substitution mutations over deletions. Nucleic Acids Res., 41, 5024-5035.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 5024-5035
    • Mukherjee, P.1    Lahiri, I.2    Pata, J.D.3
  • 35
    • 77954171862 scopus 로고    scopus 로고
    • The nucleotide composition of microsatellites impacts both replication fdelity and mismatch repair in human colorectal cells
    • Campregher, C., Scharl, T., Nemeth, M., Honeder, C., Jascur, T., Boland, C.R. and Gasche, C. (2010) The nucleotide composition of microsatellites impacts both replication fdelity and mismatch repair in human colorectal cells. Hum. Mol. Genet., 19, 2648-2657.
    • (2010) Hum. Mol. Genet. , vol.19 , pp. 2648-2657
    • Campregher, C.1    Scharl, T.2    Nemeth, M.3    Honeder, C.4    Jascur, T.5    Boland, C.R.6    Gasche, C.7
  • 36
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • Ellegren, H. (2004) Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet., 5, 435-445.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 37
    • 67649710352 scopus 로고    scopus 로고
    • The unique structure of A-tracts and intrinsic DNA bending
    • Haran, T.E. and Mohanty, U. (2009) The unique structure of A-tracts and intrinsic DNA bending. Q. Rev. Biophys., 42, 41-81.
    • (2009) Q. Rev. Biophys. , vol.42 , pp. 41-81
    • Haran, T.E.1    Mohanty, U.2
  • 38
    • 0035997345 scopus 로고    scopus 로고
    • Long-distance electron transfer through DNA
    • Giese, B. (2002) Long-distance electron transfer through DNA. Annu. Rev. Biochem., 71, 51-70.
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 51-70
    • Giese, B.1
  • 39
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • Richmond, T.J. and Davey, C.A. (2003) The structure of DNA in the nucleosome core. Nature, 423, 145-150.
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 40
    • 60349115060 scopus 로고    scopus 로고
    • Poly(dA:dT) tracts: Major determinants of nucleosome organization
    • Segal, E. and Widom, J. (2009) Poly(dA:dT) tracts: major determinants of nucleosome organization. Curr. Opin. Struct. Biol., 19, 65-71.
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 65-71
    • Segal, E.1    Widom, J.2
  • 41
    • 84864487717 scopus 로고    scopus 로고
    • The mechanics behind DNA sequence-dependent properties of the nucleosome
    • Chua, E.Y., Vasudevan, D., Davey, G.E., Wu, B. and Davey, C.A. (2012) The mechanics behind DNA sequence-dependent properties of the nucleosome. Nucleic Acids Res., 40, 6338-6352.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 6338-6352
    • Chua, E.Y.1    Vasudevan, D.2    Davey, G.E.3    Wu, B.4    Davey, C.A.5
  • 42
    • 84901680089 scopus 로고    scopus 로고
    • Whole-genome sequencing and comprehensive molecular profling identify new driver mutations in gastric cancer
    • Wang, K., Yuen, S.T., Xu, J., Lee, S.P., Yan, H.H., Shi, S.T., Siu, H.C., Deng, S., Chu, K.M., Law, S. et al. (2014) Whole-genome sequencing and comprehensive molecular profling identify new driver mutations in gastric cancer. Nat. Genet., 46, 573-582.
    • (2014) Nat. Genet. , vol.46 , pp. 573-582
    • Wang, K.1    Yuen, S.T.2    Xu, J.3    Lee, S.P.4    Yan, H.H.5    Shi, S.T.6    Siu, H.C.7    Deng, S.8    Chu, K.M.9    Law, S.10
  • 43
    • 0034257989 scopus 로고    scopus 로고
    • Infuence of molecular fexibility on DNA radiosensitivity: A simulation study
    • Viduna, D., Hinsen, K. and Kneller, G. (2000) Infuence of molecular fexibility on DNA radiosensitivity: a simulation study. Phys. Rev. E, 62, 3986-3990.
    • (2000) Phys. Rev. e , vol.62 , pp. 3986-3990
    • Viduna, D.1    Hinsen, K.2    Kneller, G.3
  • 44
    • 84868144458 scopus 로고    scopus 로고
    • Probing sequence-specifc DNA fexibility in A-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations
    • Nikolova, E.N., Bascom, G.D., Andricioaei, I. and Al-Hashimi, H.M. (2012) Probing sequence-specifc DNA fexibility in A-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations. Biochemistry, 51, 8654-8664.
    • (2012) Biochemistry , vol.51 , pp. 8654-8664
    • Nikolova, E.N.1    Bascom, G.D.2    Andricioaei, I.3    Al-Hashimi, H.M.4
  • 45
    • 84895808218 scopus 로고    scopus 로고
    • Nucleotide selection by the Y-family DNA polymerase Dpo4 involves template translocation and misalignment
    • Brenlla, A., Markiewicz, R.P., Rueda, D. and Romano, L.J. (2014) Nucleotide selection by the Y-family DNA polymerase Dpo4 involves template translocation and misalignment. Nucleic Acids Res., 42, 2555-2563.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 2555-2563
    • Brenlla, A.1    Markiewicz, R.P.2    Rueda, D.3    Romano, L.J.4
  • 46
    • 0035812849 scopus 로고    scopus 로고
    • Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication
    • Ling, H., Boudsocq, F., Woodgate, R. and Yang, W. (2001) Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell, 107, 91-102.
    • (2001) Cell , vol.107 , pp. 91-102
    • Ling, H.1    Boudsocq, F.2    Woodgate, R.3    Yang, W.4
  • 47
    • 58149085464 scopus 로고    scopus 로고
    • DNA sequence context as a determinant of the quantity and chemistry of guanine oxidation produced by hydroxyl radicals and one-electron oxidants
    • Margolin, Y., Shafrovich, V., Geacintov, N.E., DeMott, M.S. and Dedon, P.C. (2008) DNA sequence context as a determinant of the quantity and chemistry of guanine oxidation produced by hydroxyl radicals and one-electron oxidants. J. Biol. Chem., 283, 35569-35578.
    • (2008) J. Biol. Chem. , vol.283 , pp. 35569-35578
    • Margolin, Y.1    Shafrovich, V.2    Geacintov, N.E.3    Demott, M.S.4    Dedon, P.C.5
  • 48
    • 84863686709 scopus 로고    scopus 로고
    • 8-Oxo-2'-deoxyguanosine as a biomarker of tobacco-smoking-induced oxidative stress
    • Mesaros, C, Arora, J.S., Wholer, A., Vachani, A. and Blair, I.A. (2012) 8-Oxo-2'-deoxyguanosine as a biomarker of tobacco-smoking-induced oxidative stress. Free Radic. Biol. Med, 53, 610-617.
    • (2012) Free Radic. Biol. Med , vol.53 , pp. 610-617
    • Mesaros, C.1    Arora, J.S.2    Wholer, A.3    Vachani, A.4    Blair, I.A.5
  • 49
    • 67649949088 scopus 로고    scopus 로고
    • Analysis of 7, 8-dihydro-8-oxo-2'-deoxyguanosine in cellular DNA during oxidative stress
    • Mangal, D., Vudathala, D., Park, J.H., Lee, S.H., Penning, T.M. and Blair, I.A. (2009) Analysis of 7, 8-dihydro-8-oxo-2'-deoxyguanosine in cellular DNA during oxidative stress. Chem. Res. Toxicol., 22, 788-797.
    • (2009) Chem. Res. Toxicol. , vol.22 , pp. 788-797
    • Mangal, D.1    Vudathala, D.2    Park, J.H.3    Lee, S.H.4    Penning, T.M.5    Blair, I.A.6
  • 50
    • 84858136442 scopus 로고    scopus 로고
    • Chemical and biological consequences of oxidatively damaged guanine in DNA
    • Delaney, S., Jarem, D.A., Volle, C.B. and Yennie, C.J. (2012) Chemical and biological consequences of oxidatively damaged guanine in DNA. Free Radic. Res., 46, 420-441.
    • (2012) Free Radic. Res. , vol.46 , pp. 420-441
    • Delaney, S.1    Jarem, D.A.2    Volle, C.B.3    Yennie, C.J.4
  • 51
    • 33646965265 scopus 로고    scopus 로고
    • Recognition and reaction of metallointercalators with DNA
    • Erkkila, K.E., Odom, DT. and Barton, J.K. (1999) Recognition and reaction of metallointercalators with DNA. Chem. Rev., 99, 2777-2796.
    • (1999) Chem. Rev. , vol.99 , pp. 2777-2796
    • Erkkila, K.E.1    Odom, D.T.2    Barton, J.K.3
  • 53
    • 0029773892 scopus 로고    scopus 로고
    • Theoretical studies of GG-specifc photocleavage of DNA via electron transfer: Signifcant lowering of ionization potential and 5'-localization of HOMO of stacked GG bases in B-form DNA
    • Sugiyama, H. and Saito, I. (1996) Theoretical studies of GG-specifc photocleavage of DNA via electron transfer: signifcant lowering of ionization potential and 5'-localization of HOMO of stacked GG bases in B-form DNA. J. Am. Chem. Soc., 118, 7063-7068.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 7063-7068
    • Sugiyama, H.1    Saito, I.2
  • 54
    • 0032539233 scopus 로고    scopus 로고
    • Sequence dependent long range hole transport in DNA
    • Meggers, E., Michel-Beyerle, M.E. and Giese, B. (1998) Sequence dependent long range hole transport in DNA. J. Am. Chem. Soc., 120, 12950-12955.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 12950-12955
    • Meggers, E.1    Michel-Beyerle, M.E.2    Giese, B.3
  • 56
    • 29544444893 scopus 로고
    • Photoinduced DNA cleavage via electron transfer: Demonstration that guanine residues located 5' to guanine are the most electron-donating sites
    • Saito, I., Takayama, M., Sugiyama, H., Nakatani, K., Tsuchida, A. and Yamamoto, M. (1995) Photoinduced DNA cleavage via electron transfer: demonstration that guanine residues located 5' to guanine are the most electron-donating sites. J. Am. Chem. Soc, 117, 6406-6407.
    • (1995) J. Am. Chem. Soc , vol.117 , pp. 6406-6407
    • Saito, I.1    Takayama, M.2    Sugiyama, H.3    Nakatani, K.4    Tsuchida, A.5    Yamamoto, M.6
  • 57
    • 0032501424 scopus 로고    scopus 로고
    • Mapping of the hot spots for DNA damage by one-electron oxidation: Effcacy of GG doublets and GGG triplets as a trap in long-range hole migration
    • Saito, I., Nakamura, T., Nakatani, K., Yoshioka, Y, Yamaguchi, K. and Sugiyama, H. (1998) Mapping of the hot spots for DNA damage by one-electron oxidation: effcacy of GG doublets and GGG triplets as a trap in long-range hole migration. J. Am. Chem. Soc, 120, 12686-12687.
    • (1998) J. Am. Chem. Soc , vol.120 , pp. 12686-12687
    • Saito, I.1    Nakamura, T.2    Nakatani, K.3    Yoshioka, Y.4    Yamaguchi, K.5    Sugiyama, H.6
  • 58
    • 0033615295 scopus 로고    scopus 로고
    • Experimental and theoretical studies on the selectivity of GGG triplets toward one-electron oxidation in B-form DNA
    • Yoshioka, Y, Kitagawa, Y, Takano, Y, Yamaguchi, K., Nakamura, T. and Saito, I. (1999) Experimental and theoretical studies on the selectivity of GGG triplets toward one-electron oxidation in B-form DNA. J. Am. Chem. Soc, 121, 8712-8719.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 8712-8719
    • Yoshioka, Y.1    Kitagawa, Y.2    Takano, Y.3    Yamaguchi, K.4    Nakamura, T.5    Saito, I.6
  • 60
    • 27144553173 scopus 로고    scopus 로고
    • Direct optimization method to study constrained systems within density-functional theory
    • Wu, Q. and Van Voorhis, T. (2005) Direct optimization method to study constrained systems within density-functional theory. Phys. Rev. A., 72, 024502.
    • (2005) Phys. Rev. A. , vol.72 , pp. 024502
    • Wu, Q.1    Van Voorhis, T.2
  • 63
    • 84862985327 scopus 로고    scopus 로고
    • Calculation of the stabilization energies of oxidatively damaged guanine base pairs with guanine
    • Suzuki, M., Kino, K., Morikawa, M., Kobayashi, T., Komori, R. and Miyazawa, H. (2012) Calculation of the stabilization energies of oxidatively damaged guanine base pairs with guanine. Molecules, 17, 6705-6715.
    • (2012) Molecules , vol.17 , pp. 6705-6715
    • Suzuki, M.1    Kino, K.2    Morikawa, M.3    Kobayashi, T.4    Komori, R.5    Miyazawa, H.6
  • 64
    • 79952105312 scopus 로고    scopus 로고
    • Coarse-grained time-dependent density functional simulation of charge transfer in complex systems: Application to hole transfer in DNA
    • Kubar, T. and Elstner, M. (2010) Coarse-grained time-dependent density functional simulation of charge transfer in complex systems: application to hole transfer in DNA. J. Phys. Chem. B, 114, 11221-11240.
    • (2010) J. Phys. Chem. B , vol.114 , pp. 11221-11240
    • Kubar, T.1    Elstner, M.2
  • 65
    • 72949112529 scopus 로고    scopus 로고
    • Solvent effects on ionization potentials of guanine runs and chemically modifed guanine in duplex DNA: Effect of electrostatic interaction and its reduction due to solvent
    • Yokojima, S., Yoshiki, N, Yanoi, W. and Okada, A. (2009) Solvent effects on ionization potentials of guanine runs and chemically modifed guanine in duplex DNA: effect of electrostatic interaction and its reduction due to solvent. J. Phys. Chem. B, 113, 16384-16392.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 16384-16392
    • Yokojima, S.1    Yoshiki, N.2    Yanoi, W.3    Okada, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.