메뉴 건너뛰기




Volumn 5, Issue 3, 2013, Pages 606-620

Distinct mutational behaviors differentiate short tandem repeats from micro satellites in the human genome

Author keywords

Change point; Microsatellites; Replication slippage; Segmented regression; Short tandem repeats; Tandem repeats

Indexed keywords


EID: 84876512111     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evs116     Document Type: Article
Times cited : (47)

References (75)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 2
    • 79957932376 scopus 로고    scopus 로고
    • Dindel: Accurate indel calls from short-read data
    • Albers CA, et al. 2010. Dindel: accurate indel calls from short-read data. Genome Res. 21:961-973.
    • (2010) Genome Res. , vol.21 , pp. 961-973
    • Albers, C.A.1
  • 3
    • 73949134291 scopus 로고    scopus 로고
    • Evidence that two main bottleneck events shaped modern human genetic diversity
    • Amos W, Hoffman JI. 2009. Evidence that two main bottleneck events shaped modern human genetic diversity. Proc R Soc B Biol Sci. 277: 131-137.
    • (2009) Proc R Soc B Biol Sci. , vol.277 , pp. 131-137
    • Amos, W.1    Hoffman, J.I.2
  • 4
    • 79953114718 scopus 로고    scopus 로고
    • A genome-wide view of mutation rate co-variation using multivariate analyses
    • Ananda G, Chiaromonte F, Makova KD. 2011. A genome-wide view of mutation rate co-variation using multivariate analyses. Genome Biol. 12:R27.
    • (2011) Genome Biol. , vol.12
    • Ananda, G.1    Chiaromonte, F.2    Makova, K.D.3
  • 5
    • 0030889364 scopus 로고    scopus 로고
    • The length distribution of perfect dimer repetitive DNA is consistent with its evolution by an unbiased single-step mutation process
    • Bell GI, Jurka J. 1997. The length distribution of perfect dimer repetitive DNA is consistent with its evolution by an unbiased single-step mutation process. J Mol Evol. 44:414-421.
    • (1997) J Mol Evol. , vol.44 , pp. 414-421
    • Bell, G.I.1    Jurka, J.2
  • 6
    • 0034353527 scopus 로고    scopus 로고
    • D(GA x TC)(n) microsatellite DNA sequences enhance homologous DNA recombination in sv40 minichromosomes
    • Benet A, Molla G, Azorin F. 2000. d(GA x TC)(n) microsatellite DNA sequences enhance homologous DNA recombination in sv40 minichromosomes. Nucleic Acids Res. 28:4617-4622.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4617-4622
    • Benet, A.1    Molla, G.2    Azorin, F.3
  • 7
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: A web-based genome analysis tool for experimentalists
    • Ausubel FM, Baxevanis A, editors. Chapter 19: Unit 19, 11-21
    • Blankenberg D, et al. 2010. Galaxy: a web-based genome analysis tool for experimentalists. In: Ausubel FM, Baxevanis A, editors. Current protocols in molecular biology. Chapter 19: Unit 19, p. 10, 11-21.
    • (2010) Current Protocols in Molecular Biology , pp. 10
    • Blankenberg, D.1
  • 8
    • 56449125247 scopus 로고    scopus 로고
    • The relationship between micro satellite polymorphism and recombination hot spots in the human genome
    • Brandstrom M, Bagshaw AT, Gemmell NJ, Ellegren H. 2008. The relationship between microsatellite polymorphism and recombination hot spots in the human genome. Mol Biol Evol. 25:2579-2587.
    • (2008) Mol Biol Evol. , vol.25 , pp. 2579-2587
    • Brandstrom, M.1    Bagshaw, A.T.2    Gemmell, N.J.3    Ellegren, H.4
  • 9
    • 44849095421 scopus 로고    scopus 로고
    • Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias
    • Brandstrom M, Ellegren H. 2008. Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias. Genome Res. 18:881-887.
    • (2008) Genome Res. , vol.18 , pp. 881-887
    • Brandstrom, M.1    Ellegren, H.2
  • 10
    • 77954171862 scopus 로고    scopus 로고
    • The nucleotide composition of microsatellites impacts both replication fidelity and mismatch repair in human colorectal cells
    • Campregher C, et al. 2010. The nucleotide composition of microsatellites impacts both replication fidelity and mismatch repair in human colorectal cells. Hum Mol Genet. 19: 2648-2657.
    • (2010) Hum Mol Genet. , vol.19 , pp. 2648-2657
    • Campregher, C.1
  • 11
    • 0027362710 scopus 로고
    • Structural polymorphism of d(GA.TC)(n) DNA-sequences- intramolecular and intermolecular associations of the individual strands
    • Casasnovas JM, Huertas D, Ortizlombardia M, Kypr J, Azorin F. 1993. Structural polymorphism of d(GA.TC)(n) DNA-sequences- intramolecular and intermolecular associations of the individual strands. J Mol Biol. 233:671-681.
    • (1993) J Mol Biol. , vol.233 , pp. 671-681
    • Casasnovas, J.M.1    Huertas, D.2    Ortizlombardia, M.3    Kypr, J.4    Azorin, F.5
  • 12
    • 77950661675 scopus 로고    scopus 로고
    • Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes
    • Chen CL, et al. 2010. Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes. Genome Res. 20: 447-457.
    • (2010) Genome Res. , vol.20 , pp. 447-457
    • Chen, C.L.1
  • 13
    • 33845608099 scopus 로고    scopus 로고
    • Genome-wide sequence and functional analysis of early replicating DNA in normal human fibroblasts
    • Cohen SM, Furey TS, Doggett NA, Kaufman DG. 2006. Genome-wide sequence and functional analysis of early replicating DNA in normal human fibroblasts. BMC Genomics 7:301.
    • (2006) BMC Genomics , vol.7 , pp. 301
    • Cohen, S.M.1    Furey, T.S.2    Doggett, N.A.3    Kaufman, D.G.4
  • 14
    • 0024342297 scopus 로고
    • Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes
    • Cooper DN, Krawczak M. 1989. Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes. Hum Genet. 83: 181-188.
    • (1989) Hum Genet. , vol.83 , pp. 181-188
    • Cooper, D.N.1    Krawczak, M.2
  • 15
    • 0031008401 scopus 로고    scopus 로고
    • Characteristic enrichment of DNA repeats in different genomes
    • Cox R, Mirkin SM. 1997. Characteristic enrichment of DNA repeats in different genomes. Proc Natl Acad Sci U S A. 94:5237-5242.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 5237-5242
    • Cox, R.1    Mirkin, S.M.2
  • 17
    • 84855283994 scopus 로고    scopus 로고
    • DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity
    • Diamant N, et al. 2012. DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity. Nucleic Acids Res. 40:170-180.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 170-180
    • Diamant, N.1
  • 18
    • 10744226741 scopus 로고    scopus 로고
    • Two distinct modes of microsatellite mutation processes: Evidence from the complete genomic sequences of nine species
    • Dieringer D, Schlotterer C. 2003. Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species. Genome Res. 13:2242-2251.
    • (2003) Genome Res. , vol.13 , pp. 2242-2251
    • Dieringer, D.1    Schlotterer, C.2
  • 19
    • 0032518398 scopus 로고    scopus 로고
    • Crystal structure of a bacteriophage t7 DNA replication complex at 2.2 A resolution
    • Doublie S, Tabor S, Long AM, Richardson CC, Ellenberger T. 1998. Crystal structure of a bacteriophage t7 DNA replication complex at 2.2 A resolution. Nature 391:251-258.
    • (1998) Nature , vol.391 , pp. 251-258
    • Doublie, S.1    Tabor, S.2    Long, A.M.3    Richardson, C.C.4    Ellenberger, T.5
  • 20
    • 0031576343 scopus 로고    scopus 로고
    • (GT)n repetitive tracts affect several stages of reca-promoted recombination
    • Dutreix M. 1997. (GT)n repetitive tracts affect several stages of reca-promoted recombination. J Mol Biol. 273:105-113.
    • (1997) J Mol Biol. , vol.273 , pp. 105-113
    • Dutreix, M.1
  • 21
    • 65249153186 scopus 로고    scopus 로고
    • Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome
    • Eckert KA, Hile SE. 2009. Every microsatellite is different: intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome. Mol Carcinog. 48:379-388.
    • (2009) Mol Carcinog. , vol.48 , pp. 379-388
    • Eckert, K.A.1    Hile, S.E.2
  • 22
    • 0030738503 scopus 로고    scopus 로고
    • Development and use of an in vitro HSV-tk forward mutation assay to study eukaryotic DNA polymerase processing of DNA alkyl lesions
    • Eckert KA, Hile SE, Vargo PL. 1997. Development and use of an in vitro HSV-tk forward mutation assay to study eukaryotic DNA polymerase processing of DNA alkyl lesions. Nucleic Acids Res. 25:1450-1457.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1450-1457
    • Eckert, K.A.1    Hile, S.E.2    Vargo, P.L.3
  • 23
    • 0037143581 scopus 로고    scopus 로고
    • Misalignment-mediated DNA polymerase beta mutations: Comparison of microsatellite and frame-shift error rates using a forward mutation assay
    • Eckert KA, Mowery A, Hile SE. 2002. Misalignment-mediated DNA polymerase beta mutations: comparison of microsatellite and frame-shift error rates using a forward mutation assay. Biochemistry 41: 10490-10498.
    • (2002) Biochemistry , vol.41 , pp. 10490-10498
    • Eckert, K.A.1    Mowery, A.2    Hile, S.E.3
  • 24
    • 0034564097 scopus 로고    scopus 로고
    • Microsatellite mutations in the germline: Implications for evolutionary inference
    • Ellegren H. 2000.Microsatellite mutations in the germline: implications for evolutionary inference. Trends Genet. 16:551-558.
    • (2000) Trends Genet. , vol.16 , pp. 551-558
    • Ellegren, H.1
  • 25
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 5:435-445.
    • (2004) Nat Rev Genet. , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 26
    • 0032539711 scopus 로고    scopus 로고
    • Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S cerevisiae, result from strong mutation pressures and a variety of selective forces
    • Field D, Wills C. 1998. Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc Natl Acad Sci U S A. 95:1647-1652.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 1647-1652
    • Field, D.1    Wills, C.2
  • 27
    • 0035369086 scopus 로고    scopus 로고
    • Structure of the replicating complex of a pol alpha family DNA polymerase
    • Franklin MC,Wang J, Steitz TA. 2001. Structure of the replicating complex of a pol alpha family DNA polymerase. Cell 105:657-667.
    • (2001) Cell , vol.105 , pp. 657-667
    • Franklin, M.C.1    Wang, J.2    Steitz, T.A.3
  • 29
    • 33646490558 scopus 로고    scopus 로고
    • Mechanism of a genetic glissando: Structural biology of indel mutations
    • Garcia-DiazM, Kunkel TA. 2006. Mechanism of a genetic glissando: structural biology of indel mutations. Trends Biochem Sci. 31:206-214.
    • (2006) Trends Biochem Sci. , vol.31 , pp. 206-214
    • Garcia-Diaz, M.1    Kunkel, T.A.2
  • 30
    • 78149432728 scopus 로고    scopus 로고
    • Variable tandem repeats accelerate evolution of coding and regulatory sequences
    • Gemayel R, Vinces MD, Legendre M, Verstrepen KJ. 2010. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet. 44:445-477.
    • (2010) Annu Rev Genet. , vol.44 , pp. 445-477
    • Gemayel, R.1    Vinces, M.D.2    Legendre, M.3    Verstrepen, K.J.4
  • 31
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: A platform for interactive large-scale genome analysis
    • Giardine B, et al. 2005. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 15:1451-1455.
    • (2005) Genome Res. , vol.15 , pp. 1451-1455
    • Giardine, B.1
  • 32
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Galaxy Team
    • Goecks J, Nekrutenko A, Taylor J, Galaxy Team. 2010. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11: R86.
    • (2010) Genome Biol. , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 33
    • 1542606527 scopus 로고    scopus 로고
    • Positive correlation between DNA polymerase alpha-primase pausing and mutagenesis within polypyrimidine/polypurine microsatellite sequences
    • Hile SE, Eckert KA. 2004. Positive correlation between DNA polymerase alpha-primase pausing and mutagenesis within polypyrimidine/polypurine microsatellite sequences. J Mol Biol. 335:745-759.
    • (2004) J Mol Biol. , vol.335 , pp. 745-759
    • Hile, S.E.1    Eckert, K.A.2
  • 34
    • 39149094942 scopus 로고    scopus 로고
    • DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences
    • Hile SE, Eckert KA. 2008. DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences. Nucleic Acids Res. 36:688-696.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 688-696
    • Hile, S.E.1    Eckert, K.A.2
  • 35
    • 84863280866 scopus 로고    scopus 로고
    • Beyond translesion synthesis: Polymerase k fidelity as a potential determinant of microsatellite stability
    • Hile SE, Wang X, Lee MY, Eckert KA. 2012. Beyond translesion synthesis: polymerase k fidelity as a potential determinant of microsatellite stability. Nucleic Acids Res. 40:1636-1647.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1636-1647
    • Hile, S.E.1    Wang, X.2    Lee, M.Y.3    Eckert, K.A.4
  • 36
    • 34247140642 scopus 로고    scopus 로고
    • Escherichia coli DNA polymerase IV contributes to spontaneous mutagenesis at coding sequences but not microsatellite alleles
    • Jacob KD, Eckert KA. 2007. Escherichia coli DNA polymerase IV contributes to spontaneous mutagenesis at coding sequences but not microsatellite alleles. Mutation Res. 619:93-103.
    • (2007) Mutation Res. , vol.619 , pp. 93-103
    • Jacob, K.D.1    Eckert, K.A.2
  • 37
    • 0028952245 scopus 로고
    • Simple repetitive DNA-sequences from primates-compilation and analysis
    • Jurka J, Pethiyagoda C. 1995. Simple repetitive DNA-sequences from primates-compilation and analysis. J Mol Evol. 40:120-126.
    • (1995) J Mol Evol. , vol.40 , pp. 120-126
    • Jurka, J.1    Pethiyagoda, C.2
  • 38
    • 83055187907 scopus 로고    scopus 로고
    • A matter of life or death: How microsatellites emerge in and vanish from the human genome
    • Kelkar YD, Eckert KA, Chiaromonte F, Makova KD. 2011. A matter of life or death: how microsatellites emerge in and vanish from the human genome. Genome Res. 21:2038-2048.
    • (2011) Genome Res. , vol.21 , pp. 2038-2048
    • Kelkar, Y.D.1    Eckert, K.A.2    Chiaromonte, F.3    Makova, K.D.4
  • 39
    • 77958483312 scopus 로고    scopus 로고
    • What is a microsatellite: A computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats
    • Kelkar YD, et al. 2010. What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats. Genome Biol Evol. 2:620-635.
    • (2010) Genome Biol Evol. , vol.2 , pp. 620-635
    • Kelkar, Y.D.1
  • 40
    • 38049048656 scopus 로고    scopus 로고
    • The genome-wide determinants of human and chimpanzee microsatellite evolution
    • Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. 2008. The genome-wide determinants of human and chimpanzee microsatellite evolution. Genome Res. 18:30-38.
    • (2008) Genome Res. , vol.18 , pp. 30-38
    • Kelkar, Y.D.1    Tyekucheva, S.2    Chiaromonte, F.3    Makova, K.D.4
  • 41
    • 78049354879 scopus 로고    scopus 로고
    • Fine-scale recombination rate differences between sexes, populations and individuals
    • Kong A, et al. 2010. Fine-scale recombination rate differences between sexes, populations and individuals. Nature 467:1099-1103.
    • (2010) Nature , vol.467 , pp. 1099-1103
    • Kong, A.1
  • 42
    • 0030025084 scopus 로고    scopus 로고
    • Exonucleolytic proofreading during replication of repetitive DNA
    • Kroutil LC, Register K, Bebenek K, Kunkel TA. 1996. Exonucleolytic proofreading during replication of repetitive DNA. Biochemistry 35: 1046-1053.
    • (1996) Biochemistry , vol.35 , pp. 1046-1053
    • Kroutil, L.C.1    Register, K.2    Bebenek, K.3    Kunkel, T.A.4
  • 43
    • 0025109103 scopus 로고
    • Misalignment-mediated DNA-synthesis errors
    • Kunkel TA. 1990. Misalignment-mediated DNA-synthesis errors. Biochemistry 29:8003-8011.
    • (1990) Biochemistry , vol.29 , pp. 8003-8011
    • Kunkel, T.A.1
  • 44
    • 0347356456 scopus 로고    scopus 로고
    • The relationship between microsatellite slippage mutation rate and the number of repeat units
    • Lai Y, Sun F. 2003. The relationship between microsatellite slippage mutation rate and the number of repeat units. Mol Biol Evol. 20: 2123-2131.
    • (2003) Mol Biol Evol. , vol.20 , pp. 2123-2131
    • Lai, Y.1    Sun, F.2
  • 45
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander ES, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 46
    • 77958450864 scopus 로고    scopus 로고
    • DNA slippage occurs at microsatellite loci without minimal threshold length in humans: A comparative genomic approach
    • Leclercq S, Rivals E, Jarne P. 2010. DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach. Genome Biol Evol. 2:325-335.
    • (2010) Genome Biol Evol. , vol.2 , pp. 325-335
    • Leclercq, S.1    Rivals, E.2    Jarne, P.3
  • 47
    • 38849170546 scopus 로고    scopus 로고
    • Sequence-based estimation of minisatellite and microsatellite repeat variability
    • Legendre M, Pochet N, Pak T, Verstrepen KJ. 2007. Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res. 17:1787-1796.
    • (2007) Genome Res. , vol.17 , pp. 1787-1796
    • Legendre, M.1    Pochet, N.2    Pak, T.3    Verstrepen, K.J.4
  • 48
    • 84857386361 scopus 로고    scopus 로고
    • Frameshift mutagenesis: The roles of primer-template misalignment and the nonhomologous end-joining pathway in Saccharomyces cerevisiae
    • Lehner K,Mudrak SV,Minesinger BK, Jinks-Robertson S. 2012. Frameshift mutagenesis: the roles of primer-template misalignment and the nonhomologous end-joining pathway in Saccharomyces cerevisiae. Genetics 190:501-510.
    • (2012) Genetics , vol.190 , pp. 501-510
    • Lehner, K.1    Mudrak, S.V.2    Minesinger, B.K.3    Jinks-Robertson, S.4
  • 49
    • 0023256559 scopus 로고
    • Slipped-strand mispairing-amajor mechanism for DNA-sequence evolution
    • Levinson G, Gutman GA. 1987. Slipped-strand mispairing-amajor mechanism for DNA-sequence evolution. Mol Biol Evol. 4:203-221.
    • (1987) Mol Biol Evol. , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 50
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: Structure, function, and evolution
    • Li YC, Korol AB, Fahima T, Nevo E. 2004. Microsatellites within genes: structure, function, and evolution. Mol Biol Evol. 21:991-1007.
    • (2004) Mol Biol Evol. , vol.21 , pp. 991-1007
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 51
    • 24344442909 scopus 로고    scopus 로고
    • Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication
    • Linardopoulou EV, et al. 2005. Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication. Nature 437:94-100.
    • (2005) Nature , vol.437 , pp. 94-100
    • Linardopoulou, E.V.1
  • 52
    • 47649100711 scopus 로고    scopus 로고
    • DNA polymerases and human disease
    • Loeb LA,Monnat RJ. 2008. DNA polymerases and human disease. Nat Rev Genet. 9:594-604.
    • (2008) Nat Rev Genet. , vol.9 , pp. 594-604
    • Loeb, L.A.1    Monnat, R.J.2
  • 53
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: A statistical algorithm for sensitive and fast mapping of illumina sequence reads
    • Lunter G, Goodson M. 2011. Stampy: a statistical algorithm for sensitive and fast mapping of illumina sequence reads. Genome Res. 21: 936-939.
    • (2011) Genome Res. , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 54
    • 84856770811 scopus 로고    scopus 로고
    • Direct comparisons of illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
    • Luo C, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT. 2012. Direct comparisons of illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. PLoS One 7:e30087.
    • (2012) PLoS One , vol.7
    • Luo, C.1    Tsementzi, D.2    Kyrpides, N.3    Read, T.4    Konstantinidis, K.T.5
  • 55
    • 0033835474 scopus 로고    scopus 로고
    • Gt repeats are associated with recombination on human chromosome 22
    • Majewski J, Ott J. 2000. Gt repeats are associated with recombination on human chromosome 22. Genome Res. 10:1108-1114.
    • (2000) Genome Res. , vol.10 , pp. 1108-1114
    • Majewski, J.1    Ott, J.2
  • 56
    • 79952815580 scopus 로고    scopus 로고
    • Evaluation of microsatellite variation in the 1000 genomes project pilot studies is indicative of the quality and utility of the raw data and alignments
    • McIver LJ, Fondon JW, Skinner MA, Garner HR. 2011. Evaluation of microsatellite variation in the 1000 genomes project pilot studies is indicative of the quality and utility of the raw data and alignments. Genomics 97: 193-199.
    • (2011) Genomics , vol.97 , pp. 193-199
    • McIver, L.J.1    Fondon, J.W.2    Skinner, M.A.3    Garner, H.R.4
  • 57
    • 34548337129 scopus 로고    scopus 로고
    • Themajority of recent short DNA insertions in the human genome are tandem duplications
    • Messer PW, Arndt PF. 2007. Themajority of recent short DNA insertions in the human genome are tandem duplications. Mol Biol Evol. 24: 1190-1197.
    • (2007) Mol Biol Evol. , vol.24 , pp. 1190-1197
    • Messer, P.W.1    Arndt, P.F.2
  • 58
    • 0029892773 scopus 로고    scopus 로고
    • The birth of microsatellites
    • Messier W, Li SH, Stewart CB. 1996. The birth of microsatellites. Nature 381:483-483.
    • (1996) Nature , vol.381 , pp. 483-483
    • Messier, W.1    Li, S.H.2    Stewart, C.B.3
  • 59
    • 84876523427 scopus 로고    scopus 로고
    • The origin, evolution and functional impact of short insertion-deletion variants identified in 179 human genomes
    • Access published March 11, 2013, doi:10.1101/gr.148718.112
    • Montgomery SB, et al. 2013. The origin, evolution and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Res. Advance Access published March 11, 2013, doi:10.1101/gr.148718.112.
    • (2013) Genome Res. Advance
    • Montgomery, S.B.1
  • 60
    • 0141704311 scopus 로고    scopus 로고
    • Estimating Regression models with unknown break-points
    • Muggeo VMR. 2003. Estimating Regression models with unknown break-points. Statistics Med. 22:3055-3071.
    • (2003) Statistics Med. , vol.22 , pp. 3055-3071
    • Muggeo, V.M.R.1
  • 61
    • 67349213081 scopus 로고    scopus 로고
    • Segmented: An R package to fit regression models with broken-line relationships
    • last accessed April 2012
    • Muggeo VMR. 2008. Segmented: an R package to fit regression models with broken-line relationships. R News 8:20-25. Available from: http:// cranr-projectorg/doc/Rnews/, last accessed April 2012.
    • (2008) R News , vol.8 , pp. 20-25
    • Muggeo, V.M.R.1
  • 62
    • 0035062560 scopus 로고    scopus 로고
    • Evolutionary history of microsatellites in the obscure group of Drosophila
    • Noor MAF, Kliman RM,Machado CA. 2001. Evolutionary history of microsatellites in the obscure group of Drosophila. Mol Biol Evol. 18: 551-556.
    • (2001) Mol Biol Evol. , vol.18 , pp. 551-556
    • Noor, M.A.F.1    Kliman, R.M.2    Machado, C.A.3
  • 64
    • 34249006235 scopus 로고    scopus 로고
    • Chromatin structure and evolution in the human genome
    • Prendergast JG, et al. 2007. Chromatin structure and evolution in the human genome. BMC Evol Biol. 7:72.
    • (2007) BMC Evol Biol. , vol.7 , pp. 72
    • Prendergast, J.G.1
  • 65
    • 0032969077 scopus 로고    scopus 로고
    • Evolution of microsatellites in the yeast Saccharomyces cerevisiae: Role of length and number of repeated units
    • Pupko T, Graur D. 1999. Evolution of microsatellites in the yeast Saccharomyces cerevisiae: role of length and number of repeated units. J Mol Evol. 48:313-316.
    • (1999) J Mol Evol. , vol.48 , pp. 313-316
    • Pupko, T.1    Graur, D.2
  • 66
    • 0032063424 scopus 로고    scopus 로고
    • A threshold size for microsatellite expansion
    • Rose O, Falush D. 1998. A threshold size for microsatellite expansion. Mol Biol Evol. 15:613-615.
    • (1998) Mol Biol Evol. , vol.15 , pp. 613-615
    • Rose, O.1    Falush, D.2
  • 68
    • 24044509490 scopus 로고    scopus 로고
    • Evolution of a triplet repeat in a conifer
    • Sokol KA, Williams CG. 2005. Evolution of a triplet repeat in a conifer. Genome 48:417-426.
    • (2005) Genome , vol.48 , pp. 417-426
    • Sokol, K.A.1    Williams, C.G.2
  • 69
    • 63449141981 scopus 로고    scopus 로고
    • Human mutation rate associated with DNA replication timing
    • Stamatoyannopoulos JA, et al. 2009. Human mutation rate associated with DNA replication timing. Nat Genet. 41:393-395.
    • (2009) Nat Genet. , vol.41 , pp. 393-395
    • Stamatoyannopoulos, J.A.1
  • 70
    • 0025057566 scopus 로고
    • The z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture
    • Wahls WP, Wallace LJ, Moore PD. 1990. The z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture. Mol Cell Biol. 10:785-793.
    • (1990) Mol Cell Biol. , vol.10 , pp. 785-793
    • Wahls, W.P.1    Wallace, L.J.2    Moore, P.D.3
  • 71
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • Wang Z, et al. 2008. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet. 40:897-903.
    • (2008) Nat Genet. , vol.40 , pp. 897-903
    • Wang, Z.1
  • 72
    • 0035092492 scopus 로고    scopus 로고
    • Patterns of ancestral human diversity: An analysis of alu-insertion and restriction-site polymorphisms
    • WatkinsWS, et al. 2001. Patterns of ancestral human diversity: an analysis of alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 68:738-752.
    • (2001) Am J Hum Genet. , vol.68 , pp. 738-752
    • Watkins, W.S.1
  • 73
    • 1642337411 scopus 로고    scopus 로고
    • Estimating effective population size or mutation rate with microsatellites
    • Xu HY, Fu YX. 2004. Estimating effective population size or mutation rate with microsatellites. Genetics 166:555-563.
    • (2004) Genetics , vol.166 , pp. 555-563
    • Xu, H.Y.1    Fu, Y.X.2
  • 75
    • 0034523552 scopus 로고    scopus 로고
    • Insertions, substitutions, and the origin of microsatellites
    • Zhu YY, Strassmann JJE, Queller DDC. 2000. Insertions, substitutions, and the origin of microsatellites. Genet Res. 76:227-236.
    • (2000) Genet Res. , vol.76 , pp. 227-236
    • Zhu, Y.Y.1    Strassmann, J.J.E.2    Queller, D.D.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.