메뉴 건너뛰기




Volumn 46, Issue 6, 2014, Pages 573-582

Whole-genome sequencing and comprehensive molecular profiling identify new driver mutations in gastric cancer

(28)  Wang, Kai a   Yuen, Siu Tsan b   Xu, Jiangchun a,e   Lee, Siu Po b   Yan, Helen H N b   Shi, Stephanie T a   Siu, Hoi Cheong b   Deng, Shibing a   Chu, Kent Man b   Law, Simon b   Chan, Kok Hoe b   Chan, Annie S Y b   Tsui, Wai Yin b   Ho, Siu Lun b   Chan, Anthony K W b   Man, Jonathan L K b   Foglizzo, Valentina c   Ng, Man Kin b   Chan, April S b   Ching, Yick Pang b   more..


Author keywords

[No Author keywords available]

Indexed keywords

MUCIN 6; PROTEIN P53; RETINOBLASTOMA BINDING PROTEIN 2; RHOA GUANINE NUCLEOTIDE BINDING PROTEIN; TRANSCRIPTION FACTOR GLI3; UVOMORULIN;

EID: 84901680089     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.2983     Document Type: Article
Times cited : (851)

References (76)
  • 1
    • 82255183148 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer
    • Wang, K. et al. Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer. Nat. Genet. 43, 1219-1223 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 1219-1223
    • Wang, K.1
  • 2
    • 84860327480 scopus 로고    scopus 로고
    • Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
    • Zang, Z.J. et al. Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes. Nat. Genet. 44, 570-574 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 570-574
    • Zang, Z.J.1
  • 3
    • 84866434919 scopus 로고    scopus 로고
    • Genomic landscape of non-small cell lung cancer in smokers and never-smokers
    • Govindan, R. et al. Genomic landscape of non-small cell lung cancer in smokers and never-smokers. Cell 150, 1121-1134 (2012).
    • (2012) Cell , vol.150 , pp. 1121-1134
    • Govindan, R.1
  • 4
    • 74449093973 scopus 로고    scopus 로고
    • A comprehensive catalogue of somatic mutations from a human cancer genome
    • Pleasance, E.D. et al. A comprehensive catalogue of somatic mutations from a human cancer genome. Nature 463, 191-196 (2010).
    • (2010) Nature , vol.463 , pp. 191-196
    • Pleasance, E.D.1
  • 5
    • 84864258996 scopus 로고    scopus 로고
    • A landscape of driver mutations in melanoma
    • Hodis, E. et al. A landscape of driver mutations in melanoma. Cell 150, 251-263 (2012).
    • (2012) Cell , vol.150 , pp. 251-263
    • Hodis, E.1
  • 6
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • Cancer Genome Atlas Network
    • Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature 487, 330-337 (2012).
    • (2012) Nature , vol.487 , pp. 330-337
  • 7
    • 84877747678 scopus 로고    scopus 로고
    • DNA polymerase ε and δ exonuclease domain mutations in endometrial cancer
    • Church, D.N. et al. DNA polymerase ε and δ exonuclease domain mutations in endometrial cancer. Hum. Mol. Genet. 22, 2820-2828 (2013).
    • (2013) Hum. Mol. Genet. , vol.22 , pp. 2820-2828
    • Church, D.N.1
  • 8
    • 84877254190 scopus 로고    scopus 로고
    • Integrated genomic characterization of endometrial carcinoma
    • Kandoth, C. et al. Integrated genomic characterization of endometrial carcinoma. Nature 497, 67-73 (2013).
    • (2013) Nature , vol.497 , pp. 67-73
    • Kandoth, C.1
  • 9
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M.S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 10
    • 84878593111 scopus 로고    scopus 로고
    • Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
    • Dulak, A.M. et al. Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity. Nat. Genet. 45, 478-486 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 478-486
    • Dulak, A.M.1
  • 11
    • 84870875221 scopus 로고    scopus 로고
    • Whole-genome reconstruction and mutational signatures in gastric cancer
    • Nagarajan, N. et al. Whole-genome reconstruction and mutational signatures in gastric cancer. Genome Biol. 13, R115 (2012).
    • (2012) Genome Biol. , vol.13
    • Nagarajan, N.1
  • 12
    • 78651439545 scopus 로고    scopus 로고
    • Identifying cancer driver genes in tumor genome sequencing studies
    • Youn, A. & Simon, R. Identifying cancer driver genes in tumor genome sequencing studies. Bioinformatics 27, 175-181 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 175-181
    • Youn, A.1    Simon, R.2
  • 13
    • 0031440067 scopus 로고    scopus 로고
    • MUC6 gene polymorphism in healthy individuals and in gastric cancer patients from northern Portugal
    • Garcia, E., Carvalho, F., Amorim, A. & David, L. MUC6 gene polymorphism in healthy individuals and in gastric cancer patients from northern Portugal. Cancer Epidemiol. Biomarkers Prev. 6, 1071-1074 (1997).
    • (1997) Cancer Epidemiol. Biomarkers Prev. , vol.6 , pp. 1071-1074
    • Garcia, E.1    Carvalho, F.2    Amorim, A.3    David, L.4
  • 14
    • 77955078361 scopus 로고    scopus 로고
    • Short rare MUC6 minisatellites-5 alleles influence susceptibility to gastric carcinoma by regulating gene
    • Kwon, J.A. et al. Short rare MUC6 minisatellites-5 alleles influence susceptibility to gastric carcinoma by regulating gene. Hum. Mutat. 31, 942-949 (2010).
    • (2010) Hum. Mutat. , vol.31 , pp. 942-949
    • Kwon, J.A.1
  • 15
    • 33749489124 scopus 로고    scopus 로고
    • MUC6 down-regulation correlates with gastric carcinoma progression and a poor prognosis: An immunohistochemical study with tissue microarrays
    • Zheng, H. et al. MUC6 down-regulation correlates with gastric carcinoma progression and a poor prognosis: an immunohistochemical study with tissue microarrays. J. Cancer Res. Clin. Oncol. 132, 817-823 (2006).
    • (2006) J. Cancer Res. Clin. Oncol. , vol.132 , pp. 817-823
    • Zheng, H.1
  • 16
    • 84865517676 scopus 로고    scopus 로고
    • Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors
    • Koo, B.K. et al. Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors. Nature 488, 665-669 (2012).
    • (2012) Nature , vol.488 , pp. 665-669
    • Koo, B.K.1
  • 17
    • 0030669470 scopus 로고    scopus 로고
    • Antagonism of cell adhesion by an α-catenin mutant, and of the Wnt-signaling pathway by α-catenin in Xenopus embryos
    • Sehgal, R.N., Gumbiner, B.M. & Reichardt, L.F. Antagonism of cell adhesion by an α-catenin mutant, and of the Wnt-signaling pathway by α-catenin in Xenopus embryos. J. Cell Biol. 139, 1033-1046 (1997).
    • (1997) J. Cell Biol. , vol.139 , pp. 1033-1046
    • Sehgal, R.N.1    Gumbiner, B.M.2    Reichardt, L.F.3
  • 18
    • 27344459172 scopus 로고    scopus 로고
    • Nuclear translocation of αn-catenin by the novel zinc finger transcriptional repressor ZASC1
    • Bogaerts, S., Vanlandschoot, A., van Hengel, J. & van Roy, F. Nuclear translocation of αN-catenin by the novel zinc finger transcriptional repressor ZASC1. Exp. Cell Res. 311, 1-13 (2005).
    • (2005) Exp. Cell Res. , vol.311 , pp. 1-13
    • Bogaerts, S.1    Vanlandschoot, A.2    Van Hengel, J.3    Van Roy, F.4
  • 19
    • 84874027417 scopus 로고    scopus 로고
    • An α-E-catenin (CTNNA1) mutation in hereditary diffuse gastric cancer
    • Majewski, I.J. et al. An α-E-catenin (CTNNA1) mutation in hereditary diffuse gastric cancer. J. Pathol. 229, 621-629 (2013).
    • (2013) J. Pathol. , vol.229 , pp. 621-629
    • Majewski, I.J.1
  • 20
    • 0034907949 scopus 로고    scopus 로고
    • Sonic hedgehog regulates gastric gland morphogenesis in man and mouse
    • van den Brink, G.R. et al. Sonic hedgehog regulates gastric gland morphogenesis in man and mouse. Gastroenterology 121, 317-328 (2001).
    • (2001) Gastroenterology , vol.121 , pp. 317-328
    • Van Den Brink, G.R.1
  • 21
    • 0033916281 scopus 로고    scopus 로고
    • Hedgehog signals regulate multiple aspects of gastrointestinal development
    • Ramalho-Santos, M., Melton, D.A. & McMahon, A.P. Hedgehog signals regulate multiple aspects of gastrointestinal development. Development 127, 2763-2772 (2000).
    • (2000) Development , vol.127 , pp. 2763-2772
    • Ramalho-Santos, M.1    Melton, D.A.2    McMahon, A.P.3
  • 22
    • 79955126771 scopus 로고    scopus 로고
    • Multiple developmental programs are altered by loss of Zic1 and Zic4 to cause Dandy-Walker malformation cerebellar pathogenesis
    • Blank, M.C. et al. Multiple developmental programs are altered by loss of Zic1 and Zic4 to cause Dandy-Walker malformation cerebellar pathogenesis. Development 138, 1207-1216 (2011).
    • (2011) Development , vol.138 , pp. 1207-1216
    • Blank, M.C.1
  • 23
    • 0035826164 scopus 로고    scopus 로고
    • Sequence-specific enhancer binding protein is responsible for the differential expression of ERT/ESX/ELF-3/ESE-1/jen gene in human gastric cancer cell lines: Implication for the loss of TGF-β type II receptor expression
    • Park, S.H., Kim, Y.S., Park, B.K., Hougaard, S. & Kim, S.J. Sequence-specific enhancer binding protein is responsible for the differential expression of ERT/ESX/ELF-3/ESE-1/jen gene in human gastric cancer cell lines: implication for the loss of TGF-β type II receptor expression. Oncogene 20, 1235-1245 (2001).
    • (2001) Oncogene , vol.20 , pp. 1235-1245
    • Park, S.H.1    Kim, Y.S.2    Park, B.K.3    Hougaard, S.4    Kim, S.J.5
  • 24
    • 85027944761 scopus 로고    scopus 로고
    • Dclk1 distinguishes between tumor and normal stem cells in the intestine
    • Nakanishi, Y. et al. Dclk1 distinguishes between tumor and normal stem cells in the intestine. Nat. Genet. 45, 98-103 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 98-103
    • Nakanishi, Y.1
  • 25
    • 0030812206 scopus 로고    scopus 로고
    • Association between CpG island methylation and microsatellite instability in colorectal cancer
    • Ahuja, N. et al. Association between CpG island methylation and microsatellite instability in colorectal cancer. Cancer Res. 57, 3370-3374 (1997).
    • (1997) Cancer Res. , vol.57 , pp. 3370-3374
    • Ahuja, N.1
  • 26
    • 0035300558 scopus 로고    scopus 로고
    • CpG island methylation in premalignant stages of gastric carcinoma
    • Kang, G.H. et al. CpG island methylation in premalignant stages of gastric carcinoma. Cancer Res. 61, 2847-2851 (2001).
    • (2001) Cancer Res. , vol.61 , pp. 2847-2851
    • Kang, G.H.1
  • 27
    • 0038386054 scopus 로고    scopus 로고
    • Reduced expression of the TSP1 gene and its association with promoter hypermethylation in gastric carcinoma
    • Oue, N. et al. Reduced expression of the TSP1 gene and its association with promoter hypermethylation in gastric carcinoma. Oncology 64, 423-429 (2003).
    • (2003) Oncology , vol.64 , pp. 423-429
    • Oue, N.1
  • 28
    • 1342304087 scopus 로고    scopus 로고
    • Structural insights into the interaction of ROCKI with the switch regions of RhoA
    • Dvorsky, R., Blumenstein, L., Vetter, I.R. & Ahmadian, M.R. Structural insights into the interaction of ROCKI with the switch regions of RhoA. J. Biol. Chem. 279, 7098-7104 (2004).
    • (2004) J. Biol. Chem. , vol.279 , pp. 7098-7104
    • Dvorsky, R.1    Blumenstein, L.2    Vetter, I.R.3    Ahmadian, M.R.4
  • 29
    • 0033231561 scopus 로고    scopus 로고
    • The structural basis of Rho effector recognition revealed by the crystal structure of human RhoA complexed with the effector domain of PKN/PRK1
    • Maesaki, R. et al. The structural basis of Rho effector recognition revealed by the crystal structure of human RhoA complexed with the effector domain of PKN/PRK1. Mol. Cell 4, 793-803 (1999).
    • (1999) Mol. Cell , vol.4 , pp. 793-803
    • Maesaki, R.1
  • 30
    • 0032473351 scopus 로고    scopus 로고
    • RhoA effector mutants reveal distinct effector pathways for cytoskeletal reorganization SRF activation and transformation
    • Sahai, E., Alberts, A.S. & Treisman, R. RhoA effector mutants reveal distinct effector pathways for cytoskeletal reorganization, SRF activation and transformation. EMBO J. 17, 1350-1361 (1998).
    • (1998) EMBO J. , vol.17 , pp. 1350-1361
    • Sahai, E.1    Alberts, A.S.2    Treisman, R.3
  • 31
    • 0000638944 scopus 로고    scopus 로고
    • Determination of interaction sites on the small G protein RhoA for phospholipase D
    • Bae, C.D., Min, D.S., Fleming, I.N. & Exton, J.H. Determination of interaction sites on the small G protein RhoA for phospholipase D. J. Biol. Chem. 273, 11596-11604 (1998).
    • (1998) J. Biol. Chem. , vol.273 , pp. 11596-11604
    • Bae, C.D.1    Min, D.S.2    Fleming, I.N.3    Exton, J.H.4
  • 32
    • 12444313589 scopus 로고    scopus 로고
    • Variation in gene expression patterns in human gastric cancers
    • Chen, X. et al. Variation in gene expression patterns in human gastric cancers. Mol. Biol. Cell 14, 3208-3215 (2003).
    • (2003) Mol. Biol. Cell , vol.14 , pp. 3208-3215
    • Chen, X.1
  • 33
    • 73049116186 scopus 로고    scopus 로고
    • +ve stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro
    • Barker, N. et al. Lgr5+ve stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro. Cell Stem Cell 6, 25-36 (2010).
    • (2010) Cell Stem Cell , vol.6 , pp. 25-36
    • Barker, N.1
  • 34
    • 67349123408 scopus 로고    scopus 로고
    • Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
    • Sato, T. et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 459, 262-265 (2009).
    • (2009) Nature , vol.459 , pp. 262-265
    • Sato, T.1
  • 35
    • 34250206996 scopus 로고    scopus 로고
    • A ROCK inhibitor permits survival of dissociated human embryonic stem cells
    • Watanabe, K. et al. A ROCK inhibitor permits survival of dissociated human embryonic stem cells. Nat. Biotechnol. 25, 681-686 (2007).
    • (2007) Nat. Biotechnol. , vol.25 , pp. 681-686
    • Watanabe, K.1
  • 36
    • 84862777035 scopus 로고    scopus 로고
    • A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets
    • Deng, N. et al. A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets. Gut 61, 673-684 (2012).
    • (2012) Gut , vol.61 , pp. 673-684
    • Deng, N.1
  • 37
    • 8144230684 scopus 로고    scopus 로고
    • Genetic alterations in 102 primary gastric cancers by comparative genomic hybridization: Gain of 20q and loss of 18q are associated with tumor progression
    • Kimura, Y. et al. Genetic alterations in 102 primary gastric cancers by comparative genomic hybridization: gain of 20q and loss of 18q are associated with tumor progression. Mod. Pathol. 17, 1328-1337 (2004).
    • (2004) Mod. Pathol. , vol.17 , pp. 1328-1337
    • Kimura, Y.1
  • 38
    • 79955166265 scopus 로고    scopus 로고
    • GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
    • Mermel, C.H. et al. GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Genome Biol. 12, R41 (2011).
    • (2011) Genome Biol. , vol.12
    • Mermel, C.H.1
  • 39
    • 84869786773 scopus 로고    scopus 로고
    • PARP6, a mono(ADP-ribosyl) transferase and a negative regulator of cell proliferation, is involved in colorectal cancer development
    • Tuncel, H. et al. PARP6, a mono(ADP-ribosyl) transferase and a negative regulator of cell proliferation, is involved in colorectal cancer development. Int. J. Oncol. 41, 2079-2086 (2012).
    • (2012) Int. J. Oncol. , vol.41 , pp. 2079-2086
    • Tuncel, H.1
  • 40
    • 78449275473 scopus 로고    scopus 로고
    • KIAA0495/PDAM is frequently downregulated in oligodendroglial tumors and its knockdown by siRNA induces cisplatin resistance in glioma cells
    • Pang, J.C. et al. KIAA0495/PDAM is frequently downregulated in oligodendroglial tumors and its knockdown by siRNA induces cisplatin resistance in glioma cells. Brain Pathol. 20, 1021-1032 (2010).
    • (2010) Brain Pathol. , vol.20 , pp. 1021-1032
    • Pang, J.C.1
  • 41
    • 84870938494 scopus 로고    scopus 로고
    • CDX1 confers intestinal phenotype on gastric epithelial cells via induction of stemness-associated reprogramming factors SALL4 and KLF5
    • Fujii, Y. et al. CDX1 confers intestinal phenotype on gastric epithelial cells via induction of stemness-associated reprogramming factors SALL4 and KLF5. Proc. Natl. Acad. Sci. USA 109, 20584-20589 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 20584-20589
    • Fujii, Y.1
  • 42
    • 4644346431 scopus 로고    scopus 로고
    • Cdx1 induced intestinal metaplasia in the transgenic mouse stomach: Comparative study with Cdx2 transgenic mice
    • Mutoh, H. et al. Cdx1 induced intestinal metaplasia in the transgenic mouse stomach: comparative study with Cdx2 transgenic mice. Gut 53, 1416-1423 (2004).
    • (2004) Gut , vol.53 , pp. 1416-1423
    • Mutoh, H.1
  • 43
    • 84864145354 scopus 로고    scopus 로고
    • Methylation-dependent activation of CDX1 through NF-κB: A link from inflammation to intestinal metaplasia in the human stomach
    • Rau, T.T. et al. Methylation-dependent activation of CDX1 through NF-κB: a link from inflammation to intestinal metaplasia in the human stomach. Am. J. Pathol. 181, 487-498 (2012).
    • (2012) Am. J. Pathol. , vol.181 , pp. 487-498
    • Rau, T.T.1
  • 44
    • 84874498527 scopus 로고    scopus 로고
    • Aberrant upregulation of ASCL2 by promoter demethylation promotes the growth and resistance to 5-fluorouracil of gastric cancer cells
    • Kwon, O.H. et al. Aberrant upregulation of ASCL2 by promoter demethylation promotes the growth and resistance to 5-fluorouracil of gastric cancer cells. Cancer Sci. 104, 391-397 (2013).
    • (2013) Cancer Sci. , vol.104 , pp. 391-397
    • Kwon, O.H.1
  • 45
    • 61349150537 scopus 로고    scopus 로고
    • Transcription factor achaete scute-like 2 controls intestinal stem cell fate
    • van der Flier, L.G. et al. Transcription factor achaete scute-like 2 controls intestinal stem cell fate. Cell 136, 903-912 (2009).
    • (2009) Cell , vol.136 , pp. 903-912
    • Van Der Flier, L.G.1
  • 46
    • 84874906230 scopus 로고    scopus 로고
    • Cadherin-17 induces tumorigenesis and lymphatic metastasis in gastric cancer through activation of NFκB signaling pathway
    • Wang, J. et al. Cadherin-17 induces tumorigenesis and lymphatic metastasis in gastric cancer through activation of NFκB signaling pathway. Cancer Biol. Ther. 14, 262-270 (2013).
    • (2013) Cancer Biol. Ther. , vol.14 , pp. 262-270
    • Wang, J.1
  • 47
    • 32944462855 scopus 로고    scopus 로고
    • The c-myc gene is a direct target of mammalian SWI/SNF-related complexes during differentiation-associated cell cycle arrest
    • Nagl, N.G. Jr., Zweitzig, D.R., Thimmapaya, B., Beck, G.R. Jr. & Moran, E. The c-myc gene is a direct target of mammalian SWI/SNF-related complexes during differentiation-associated cell cycle arrest. Cancer Res. 66, 1289-1293 (2006).
    • (2006) Cancer Res. , vol.66 , pp. 1289-1293
    • Nagl Jr., N.G.1    Zweitzig, D.R.2    Thimmapaya, B.3    Beck Jr., G.R.4    Moran, E.5
  • 48
    • 80155131218 scopus 로고    scopus 로고
    • ARID1A A factor that promotes formation of SWI/SNF-mediated chromatin remodeling, is a tumor suppressor in gynecologic cancers
    • Guan, B., Wang, T.L. & Shih Ie, M. ARID1A, a factor that promotes formation of SWI/SNF-mediated chromatin remodeling, is a tumor suppressor in gynecologic cancers. Cancer Res. 71, 6718-6727 (2011).
    • (2011) Cancer Res. , vol.71 , pp. 6718-6727
    • Guan, B.1    Wang, T.L.2    Shih, I.M.3
  • 49
    • 82655181474 scopus 로고    scopus 로고
    • Classification of Epstein-Barr virus-positive gastric cancers by definition of DNA methylation epigenotypes
    • Matsusaka, K. et al. Classification of Epstein-Barr virus-positive gastric cancers by definition of DNA methylation epigenotypes. Cancer Res. 71, 7187-7197 (2011).
    • (2011) Cancer Res. , vol.71 , pp. 7187-7197
    • Matsusaka, K.1
  • 50
    • 84867820420 scopus 로고    scopus 로고
    • Methylation subtypes and large-scale epigenetic alterations in gastric cancer
    • Zouridis, H. et al. Methylation subtypes and large-scale epigenetic alterations in gastric cancer. Sci. Transl. Med. 4, 156ra140 (2012).
    • (2012) Sci. Transl. Med. , vol.4 , pp. 156140
    • Zouridis, H.1
  • 51
    • 29344455676 scopus 로고    scopus 로고
    • The relationship between global methylation level, loss of heterozygosity, and microsatellite instability in sporadic colorectal cancer
    • Matsuzaki, K. et al. The relationship between global methylation level, loss of heterozygosity, and microsatellite instability in sporadic colorectal cancer. Clin. Cancer Res. 11, 8564-8569 (2005).
    • (2005) Clin. Cancer Res. , vol.11 , pp. 8564-8569
    • Matsuzaki, K.1
  • 54
    • 0030968177 scopus 로고    scopus 로고
    • The small GTPases Rho and Rac are required for the establishment of cadherin-dependent cell-cell contacts
    • Braga, V.M., Machesky, L.M., Hall, A. & Hotchin, N.A. The small GTPases Rho and Rac are required for the establishment of cadherin-dependent cell-cell contacts. J. Cell Biol. 137, 1421-1431 (1997).
    • (1997) J. Cell Biol. , vol.137 , pp. 1421-1431
    • Braga, V.M.1    MacHesky, L.M.2    Hall, A.3    Hotchin, N.A.4
  • 55
    • 0036098594 scopus 로고    scopus 로고
    • Rho GTPase signalling pathways in the morphological changes associated with apoptosis
    • Coleman, M.L. & Olson, M.F. Rho GTPase signalling pathways in the morphological changes associated with apoptosis. Cell Death Differ. 9, 493-504 (2002).
    • (2002) Cell Death Differ. , vol.9 , pp. 493-504
    • Coleman, M.L.1    Olson, M.F.2
  • 56
    • 0035072953 scopus 로고    scopus 로고
    • Membrane blebbing during apoptosis results from caspase-mediated activation of ROCK i
    • Coleman, M.L. et al. Membrane blebbing during apoptosis results from caspase-mediated activation of ROCK I. Nat. Cell Biol. 3, 339-345 (2001).
    • (2001) Nat. Cell Biol. , vol.3 , pp. 339-345
    • Coleman, M.L.1
  • 57
    • 0035152391 scopus 로고    scopus 로고
    • Integrin-mediated adhesion regulates cell polarity and membrane protrusion through the Rho family of GTPases
    • Cox, E.A., Sastry, S.K. & Huttenlocher, A. Integrin-mediated adhesion regulates cell polarity and membrane protrusion through the Rho family of GTPases. Mol. Biol. Cell 12, 265-277 (2001).
    • (2001) Mol. Biol. Cell , vol.12 , pp. 265-277
    • Cox, E.A.1    Sastry, S.K.2    Huttenlocher, A.3
  • 58
    • 0042354574 scopus 로고    scopus 로고
    • Differing modes of tumour cell invasion have distinct requirements for Rho/ROCK signalling and extracellular proteolysis
    • Sahai, E. & Marshall, C.J. Differing modes of tumour cell invasion have distinct requirements for Rho/ROCK signalling and extracellular proteolysis. Nat. Cell Biol. 5, 711-719 (2003).
    • (2003) Nat. Cell Biol. , vol.5 , pp. 711-719
    • Sahai, E.1    Marshall, C.J.2
  • 59
    • 0033561508 scopus 로고    scopus 로고
    • Overexpression of small GTP-binding protein RhoA promotes invasion of tumor cells
    • Yoshioka, K., Nakamori, S. & Itoh, K. Overexpression of small GTP-binding protein RhoA promotes invasion of tumor cells. Cancer Res. 59, 2004-2010 (1999).
    • (1999) Cancer Res. , vol.59 , pp. 2004-2010
    • Yoshioka, K.1    Nakamori, S.2    Itoh, K.3
  • 60
    • 33846014269 scopus 로고    scopus 로고
    • Smurf1 regulates tumor cell plasticity and motility through degradation of RhoA leading to localized inhibition of contractility
    • Sahai, E., Garcia-Medina, R., Pouyssegur, J. & Vial, E. Smurf1 regulates tumor cell plasticity and motility through degradation of RhoA leading to localized inhibition of contractility. J. Cell Biol. 176, 35-42 (2007).
    • (2007) J. Cell Biol. , vol.176 , pp. 35-42
    • Sahai, E.1    Garcia-Medina, R.2    Pouyssegur, J.3    Vial, E.4
  • 61
    • 82355173494 scopus 로고    scopus 로고
    • RhoA/ROCK signaling mediates plasticity of scirrhous gastric carcinoma motility
    • Matsuoka, T. et al. RhoA/ROCK signaling mediates plasticity of scirrhous gastric carcinoma motility. Clin. Exp. Metastasis 28, 627-636 (2011).
    • (2011) Clin. Exp. Metastasis , vol.28 , pp. 627-636
    • Matsuoka, T.1
  • 62
    • 84895809383 scopus 로고    scopus 로고
    • Somatic RHOA mutation in angioimmunoblastic T cell lymphoma
    • Sakata-Yanagimoto, M. et al. Somatic RHOA mutation in angioimmunoblastic T cell lymphoma. Nat. Genet. 46, 171-175 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 171-175
    • Sakata-Yanagimoto, M.1
  • 63
    • 84895829862 scopus 로고    scopus 로고
    • Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas
    • Palomero, T. et al. Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas. Nat. Genet. 46, 166-170 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 166-170
    • Palomero, T.1
  • 64
    • 84897381595 scopus 로고    scopus 로고
    • A recurrent inactivating mutation in RHOA GTPase in angioimmunoblastic T cell lymphoma
    • Yoo, H.Y. et al. A recurrent inactivating mutation in RHOA GTPase in angioimmunoblastic T cell lymphoma. Nat. Genet. 46, 371-375 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 371-375
    • Yoo, H.Y.1
  • 65
    • 84864153492 scopus 로고    scopus 로고
    • Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs
    • Saunders, C.T. et al. Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics 28, 1811-1817 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1811-1817
    • Saunders, C.T.1
  • 66
    • 33947101019 scopus 로고    scopus 로고
    • Patterns of somatic mutation in human cancer genomes
    • Greenman, C. et al. Patterns of somatic mutation in human cancer genomes. Nature 446, 153-158 (2007).
    • (2007) Nature , vol.446 , pp. 153-158
    • Greenman, C.1
  • 67
    • 84856490464 scopus 로고    scopus 로고
    • Controlled gene expression in primary Lgr5 organoid cultures
    • Koo, B.K. et al. Controlled gene expression in primary Lgr5 organoid cultures. Nat. Methods 9, 81-83 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 81-83
    • Koo, B.K.1
  • 68
    • 79961007031 scopus 로고    scopus 로고
    • CREST maps somatic structural variation in cancer genomes with base-pair resolution
    • Wang, J. et al. CREST maps somatic structural variation in cancer genomes with base-pair resolution. Nat. Methods 8, 652-654 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 652-654
    • Wang, J.1
  • 69
    • 54949156063 scopus 로고    scopus 로고
    • Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
    • Staaf, J. et al. Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. BMC Bioinformatics 9, 409 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 409
    • Staaf, J.1
  • 70
    • 35948984173 scopus 로고    scopus 로고
    • PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    • Wang, K. et al. PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res. 17, 1665-1674 (2007).
    • (2007) Genome Res. , vol.17 , pp. 1665-1674
    • Wang, K.1
  • 71
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen, A.B., Venkatraman, E.S., Lucito, R. & Wigler, M. Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5, 557-572 (2004).
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 72
    • 77956690576 scopus 로고    scopus 로고
    • A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
    • Yau, C. et al. A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data. Genome Biol. 11, R92 (2010).
    • (2010) Genome Biol. , vol.11
    • Yau, C.1
  • 73
    • 84881029688 scopus 로고    scopus 로고
    • Genomic landscape of copy number aberrations enables the identification of oncogenic drivers in hepatocellular carcinoma
    • Wang, K. et al. Genomic landscape of copy number aberrations enables the identification of oncogenic drivers in hepatocellular carcinoma. Hepatology 58, 706-717 (2013).
    • (2013) Hepatology , vol.58 , pp. 706-717
    • Wang, K.1
  • 74
    • 52949144990 scopus 로고    scopus 로고
    • Cancer outlier detection based on likelihood ratio test
    • Hu, J. Cancer outlier detection based on likelihood ratio test. Bioinformatics 24, 2193-2199 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 2193-2199
    • Hu, J.1
  • 75
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. & Tanabe, M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40, D109-D114 (2012).
    • (2012) Nucleic Acids Res. , vol.40
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 76
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J.D. & Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.