-
1
-
-
84867399426
-
A cross-species view on viruses
-
Sawyer SL, Elde NC, (2012) A cross-species view on viruses. Curr Opin Virol 2: 561–568. doi: 10.1016/j.coviro.2012.07.003 22835485
-
(2012)
Curr Opin Virol
, vol.2
, pp. 561-568
-
-
Sawyer, S.L.1
Elde, N.C.2
-
2
-
-
84867647908
-
Rules of Engagement: Molecular Insights from Host-Virus Arms Races
-
Daugherty MD, Malik HS, (2012) Rules of Engagement: Molecular Insights from Host-Virus Arms Races. Annu Rev Genet 46: 677–700. doi: 10.1146/annurev-genet-110711-155522 23145935
-
(2012)
Annu Rev Genet
, vol.46
, pp. 677-700
-
-
Daugherty, M.D.1
Malik, H.S.2
-
3
-
-
19344369742
-
Adaptation and Immunity
-
Holmes EC, (2004) Adaptation and Immunity. PLoS Biol 2: e307. 15367941
-
(2004)
PLoS Biol
, vol.2
, pp. e307
-
-
Holmes, E.C.1
-
4
-
-
84896958063
-
Innate Immune Sensing and Signaling of Cytosolic Nucleic Acids
-
Wu J, Chen ZJ, (2014) Innate Immune Sensing and Signaling of Cytosolic Nucleic Acids. Annu Rev Immunol 32: 461–488. doi: 10.1146/annurev-immunol-032713-120156 24655297
-
(2014)
Annu Rev Immunol
, vol.32
, pp. 461-488
-
-
Wu, J.1
Chen, Z.J.2
-
5
-
-
84907515304
-
Cellular sensing of viral DNA and viral evasion mechanisms
-
Orzalli MH, Knipe DM, (2014) Cellular sensing of viral DNA and viral evasion mechanisms. Annu Rev Microbiol 68: 477–492. doi: 10.1146/annurev-micro-091313-103409 25002095
-
(2014)
Annu Rev Microbiol
, vol.68
, pp. 477-492
-
-
Orzalli, M.H.1
Knipe, D.M.2
-
6
-
-
58749102026
-
Protein kinase R reveals an evolutionary model for defeating viral mimicry
-
Elde NC, Child SJ, Geballe AP, Malik HS, (2009) Protein kinase R reveals an evolutionary model for defeating viral mimicry. Nature 457: 485–489. doi: 10.1038/nature07529 19043403
-
(2009)
Nature
, vol.457
, pp. 485-489
-
-
Elde, N.C.1
Child, S.J.2
Geballe, A.P.3
Malik, H.S.4
-
7
-
-
78651468793
-
The Oligoadenylate Synthetase Family: An Ancient Protein Family with Multiple Antiviral Activities
-
Kristiansen H, Gad HH, Eskildsen-Larsen S, Despres P, Hartmann R, (2011) The Oligoadenylate Synthetase Family: An Ancient Protein Family with Multiple Antiviral Activities. J Interf Cytok Res 31: 41–47.
-
(2011)
J Interf Cytok Res
, vol.31
, pp. 41-47
-
-
Kristiansen, H.1
Gad, H.H.2
Eskildsen-Larsen, S.3
Despres, P.4
Hartmann, R.5
-
8
-
-
84899131835
-
The cGAS-cGAMP-STING pathway of cytosolic DNA sensing and signaling
-
Cai X, Chiu Y-H, Chen ZJ, (2014) The cGAS-cGAMP-STING pathway of cytosolic DNA sensing and signaling. Mol Cell 54: 289–296. doi: 10.1016/j.molcel.2014.03.040 24766893
-
Mol Cell
, vol.54
, pp. 289-296
-
-
Cai, X.1
Chiu, Y.-H.2
Chen, Z.J.3
-
9
-
-
84878592773
-
Structure of Human cGAS Reveals a Conserved Family of Second-Messenger Enzymes in Innate Immunity
-
Kranzusch PJ, Lee AS-Y, Berger JM, Doudna JA, (2013) Structure of Human cGAS Reveals a Conserved Family of Second-Messenger Enzymes in Innate Immunity. Cell Rep 3: 1362–1368. doi: 10.1016/j.celrep.2013.05.008 23707061
-
(2013)
Cell Rep
, vol.3
, pp. 1362-1368
-
-
Kranzusch, P.J.1
Lee, A.S.-Y.2
Berger, J.M.3
Doudna, J.A.4
-
10
-
-
84879408976
-
Structural mechanism of cytosolic DNA sensing by cGAS
-
Civril F, Deimling T, de Oliveira Mann CC, Ablasser A, Moldt M, et al. (2013) Structural mechanism of cytosolic DNA sensing by cGAS. Nature 498: 332–337. doi: 10.1038/nature12305 23722159
-
(2013)
Nature
, vol.498
, pp. 332-337
-
-
Civril, F.1
Deimling, T.2
de Oliveira Mann, C.C.3
Ablasser, A.4
Moldt, M.5
-
11
-
-
84878309796
-
Cyclic [G(2'-5')pA(3'-5')p] Is the Metazoan Second Messenger Produced by DNA-Activated Cyclic GMP-AMP Synthase
-
Gao P, Ascano M, Wu Y, Barchet W, Gaffney BL, et al. (2013) Cyclic [G(2'-5')pA(3'-5')p] Is the Metazoan Second Messenger Produced by DNA-Activated Cyclic GMP-AMP Synthase. Cell 153: 1094–1107. doi: 10.1016/j.cell.2013.04.046 23647843
-
(2013)
Cell
, vol.153
, pp. 1094-1107
-
-
Gao, P.1
Ascano, M.2
Wu, Y.3
Barchet, W.4
Gaffney, B.L.5
-
12
-
-
84873711885
-
Cyclic GMP-AMP Synthase Is a Cytosolic DNA Sensor That Activates the Type I Interferon Pathway
-
Sun L, Wu J, Du F, Chen X, Chen ZJ, (2013) Cyclic GMP-AMP Synthase Is a Cytosolic DNA Sensor That Activates the Type I Interferon Pathway. Science 339: 786–791. doi: 10.1126/science.1232458 23258413
-
(2013)
Science
, vol.339
, pp. 786-791
-
-
Sun, L.1
Wu, J.2
Du, F.3
Chen, X.4
Chen, Z.J.5
-
13
-
-
36348987303
-
Viral Encounters with 2'-5-'Oligoadenylate Synthetase and RNase L during the Interferon Antiviral Response
-
Silverman RH, (2007) Viral Encounters with 2'-5-'Oligoadenylate Synthetase and RNase L during the Interferon Antiviral Response. J Virol 81: 12720–12729. doi: 10.1128/JVI.01471-07 17804500
-
(2007)
J Virol
, vol.81
, pp. 12720-12729
-
-
Silverman, R.H.1
-
14
-
-
84873142658
-
Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1
-
Donovan J, Dufner M, Korennykh A, (2013) Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1. Proc Natl Acad Sci USA 110: 1652–1657. doi: 10.1073/pnas.1218528110 23319625
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 1652-1657
-
-
Donovan, J.1
Dufner, M.2
Korennykh, A.3
-
15
-
-
0344413485
-
Crystal Structure of the 2′-Specific and Double-Stranded RNA-Activated Interferon-Induced Antiviral Protein 2′-5′-Oligoadenylate Synthetase
-
Hartmann R, Justesen J, Sarkar SN, Sen GC, Yee VC, (2003) Crystal Structure of the 2′-Specific and Double-Stranded RNA-Activated Interferon-Induced Antiviral Protein 2′-5′-Oligoadenylate Synthetase. Mol Cell Biol 12: 1173–1185.
-
(2003)
Mol Cell Biol
, vol.12
, pp. 1173-1185
-
-
Hartmann, R.1
Justesen, J.2
Sarkar, S.N.3
Sen, G.C.4
Yee, V.C.5
-
16
-
-
0034020463
-
Expansion and Molecular Evolution of the Interferon-Induced 2'-5' Oligoadenylate Synthetase Gene Family
-
Kumar S, Chandra M, Valente G, Floyd-Smith G, (2000) Expansion and Molecular Evolution of the Interferon-Induced 2'-5' Oligoadenylate Synthetase Gene Family. Mol Biol Evol 17: 738–750. 10779534
-
(2000)
Mol Biol Evol
, vol.17
, pp. 738-750
-
-
Kumar, S.1
Chandra, M.2
Valente, G.3
Floyd-Smith, G.4
-
17
-
-
33750277269
-
The Mammalian 2′-5′ Oligoadenylate Synthetase Gene Family: Evidence for Concerted Evolution of Paralogous Oas1 Genes in Rodentia and Artiodactyla
-
Perelygin AA, Zharkikh AA, Scherbik SV, Brinton MA, (2006) The Mammalian 2′-5′ Oligoadenylate Synthetase Gene Family: Evidence for Concerted Evolution of Paralogous Oas1 Genes in Rodentia and Artiodactyla. J Mol Evol 63: 562–576. 17024523
-
(2006)
J Mol Evol
, vol.63
, pp. 562-576
-
-
Perelygin, A.A.1
Zharkikh, A.A.2
Scherbik, S.V.3
Brinton, M.A.4
-
18
-
-
0038239253
-
Characterization of the 2'-5-'oligoadenylate synthetase ubiquitin-like family
-
Eskildsen S, Justesen J, Schierup MH, Hartmann R, (2003) Characterization of the 2'-5-'oligoadenylate synthetase ubiquitin-like family. Nucleic Acids Res 31: 3166–3173. 12799444
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3166-3173
-
-
Eskildsen, S.1
Justesen, J.2
Schierup, M.H.3
Hartmann, R.4
-
19
-
-
0032530089
-
p59OASL, a 2′-5′ oligoadenylate synthetase like protein: a novel human gene related to the 2′-5′ oligoadenylate synthetase family
-
Hartmann R, Olsen HS, Widder S, Jorgensen R, Justesen J, (1998) p59OASL, a 2′-5′ oligoadenylate synthetase like protein: a novel human gene related to the 2′-5′ oligoadenylate synthetase family. Nucleic Acids Res 26: 4121–4127. 9722630
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4121-4127
-
-
Hartmann, R.1
Olsen, H.S.2
Widder, S.3
Jorgensen, R.4
Justesen, J.5
-
20
-
-
84862297105
-
Antagonism of the Interferon-Induced OAS-RNase L Pathway by Murine Coronavirus ns2 Protein Is Required for Virus Replication and Liver Pathology
-
Zhao L, Jha BK, Wu A, Elliott R, Ziebuhr J, et al. (2012) Antagonism of the Interferon-Induced OAS-RNase L Pathway by Murine Coronavirus ns2 Protein Is Required for Virus Replication and Liver Pathology. Cell Host and Microbe 11: 607–616. doi: 10.1016/j.chom.2012.04.011 22704621
-
(2012)
Cell Host and Microbe
, vol.11
, pp. 607-616
-
-
Zhao, L.1
Jha, B.K.2
Wu, A.3
Elliott, R.4
Ziebuhr, J.5
-
21
-
-
0032502728
-
Vaccinia Virus E3L Protein Is an Inhibitor of the Interferon (IFN)-Induced 2-5A Synthetase Enzyme
-
Rivas C, Gil J, Melkova Z, Esteban M, Diaz-Guerra M, (1998) Vaccinia Virus E3L Protein Is an Inhibitor of the Interferon (IFN)-Induced 2-5A Synthetase Enzyme. Virology 243: 406–414. 9568039
-
(1998)
Virology
, vol.243
, pp. 406-414
-
-
Rivas, C.1
Gil, J.2
Melkova, Z.3
Esteban, M.4
Diaz-Guerra, M.5
-
22
-
-
33947357710
-
Inhibition of Cellular 2'-5' Oligoadenylate Synthetase by the Herpes Simplex Virus Type 1 Us11 Protein
-
Sanchez R, Mohr I, (2007) Inhibition of Cellular 2'-5' Oligoadenylate Synthetase by the Herpes Simplex Virus Type 1 Us11 Protein. J Virol 81: 3455–3464. 17229694
-
(2007)
J Virol
, vol.81
, pp. 3455-3464
-
-
Sanchez, R.1
Mohr, I.2
-
23
-
-
84890235012
-
Cyclic GMP-AMP Synthase Is Activated by Double-Stranded DNA-Induced Oligomerization
-
Li X, Shu C, Yi G, Chaton CT, Shelton CL, et al. (2013) Cyclic GMP-AMP Synthase Is Activated by Double-Stranded DNA-Induced Oligomerization. Immunity 39: 1019–1031. doi: 10.1016/j.immuni.2013.10.019 24332030
-
(2013)
Immunity
, vol.39
, pp. 1019-1031
-
-
Li, X.1
Shu, C.2
Yi, G.3
Chaton, C.T.4
Shelton, C.L.5
-
24
-
-
84893863593
-
The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop
-
Zhang X, Wu J, Du F, Xu H, Sun L, et al. (2014) The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop. Cell Rep 6: 421–430. doi: 10.1016/j.celrep.2014.01.003 24462292
-
(2014)
Cell Rep
, vol.6
, pp. 421-430
-
-
Zhang, X.1
Wu, J.2
Du, F.3
Xu, H.4
Sun, L.5
-
25
-
-
84873724533
-
Cyclic GMP-AMP Is an Endogenous Second Messenger in Innate Immune Signaling by Cytosolic DNA
-
Wu J, Sun L, Chen X, Du F, Shi H, et al. (2013) Cyclic GMP-AMP Is an Endogenous Second Messenger in Innate Immune Signaling by Cytosolic DNA. Science 339: 826–830. doi: 10.1126/science.1229963 23258412
-
(2013)
Science
, vol.339
, pp. 826-830
-
-
Wu, J.1
Sun, L.2
Chen, X.3
Du, F.4
Shi, H.5
-
26
-
-
84878572947
-
The Innate Immune DNA Sensor cGAS Produces a Noncanonical Cyclic Dinucleotide that Activates Human STING
-
Diner EJ, Burdette DL, Wilson SC, Monroe KM, Kellenberger CA, et al. (2013) The Innate Immune DNA Sensor cGAS Produces a Noncanonical Cyclic Dinucleotide that Activates Human STING. Cell Rep 3: 1355–1361. doi: 10.1016/j.celrep.2013.05.009 23707065
-
(2013)
Cell Rep
, vol.3
, pp. 1355-1361
-
-
Diner, E.J.1
Burdette, D.L.2
Wilson, S.C.3
Monroe, K.M.4
Kellenberger, C.A.5
-
27
-
-
84879385334
-
cGAS produces a 2′-5′-linked cyclic dinucleotide second messenger that activates STING
-
Ablasser A, Goldeck M, Cavlar T, Deimling T, Witte G, et al. (2013) cGAS produces a 2′-5′-linked cyclic dinucleotide second messenger that activates STING. Nature 498: 380–384. doi: 10.1038/nature12306 23722158
-
(2013)
Nature
, vol.498
, pp. 380-384
-
-
Ablasser, A.1
Goldeck, M.2
Cavlar, T.3
Deimling, T.4
Witte, G.5
-
28
-
-
84880508067
-
Cyclic GMP-AMP Containing Mixed Phosphodiester Linkages Is An Endogenous High-Affinity Ligand for STING
-
Zhang X, Shi H, Wu J, Zhang X, Sun L, et al. (2013) Cyclic GMP-AMP Containing Mixed Phosphodiester Linkages Is An Endogenous High-Affinity Ligand for STING. Mol Cell 51: 226–235. doi: 10.1016/j.molcel.2013.05.022 23747010
-
(2013)
Mol Cell
, vol.51
, pp. 226-235
-
-
Zhang, X.1
Shi, H.2
Wu, J.3
Zhang, X.4
Sun, L.5
-
29
-
-
84893637182
-
STING-dependent cytosolic DNA sensing pathways
-
Barber GN, (2014) STING-dependent cytosolic DNA sensing pathways. Trends Immunol 35: 88–93. doi: 10.1016/j.it.2013.10.010 24309426
-
(2014)
Trends Immunol
, vol.35
, pp. 88-93
-
-
Barber, G.N.1
-
30
-
-
53349178089
-
STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling
-
Ishikawa H, Barber GN, (2008) STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling. Nature 455: 674–678. doi: 10.1038/nature07317 18724357
-
(2008)
Nature
, vol.455
, pp. 674-678
-
-
Ishikawa, H.1
Barber, G.N.2
-
31
-
-
70349943834
-
STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity
-
Ishikawa H, Ma Z, Barber GN, (2009) STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity. Nature 461: 788–792. doi: 10.1038/nature08476 19776740
-
(2009)
Nature
, vol.461
, pp. 788-792
-
-
Ishikawa, H.1
Ma, Z.2
Barber, G.N.3
-
32
-
-
84919952626
-
Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity
-
Schoggins JW, MacDuff DA, Imanaka N, Gainey MD, Shrestha B, et al. (2013) Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity. Nature: 1–17.
-
(2013)
Nature
, pp. 1-17
-
-
Schoggins, J.W.1
MacDuff, D.A.2
Imanaka, N.3
Gainey, M.D.4
Shrestha, B.5
-
33
-
-
84891702580
-
Adenovirus Detection by the cGAS/STING/TBK1 DNA Sensing Cascade
-
Lam E, Stein S, Falck-Pedersen E, (2013) Adenovirus Detection by the cGAS/STING/TBK1 DNA Sensing Cascade. J Virol 88: 974–981. doi: 10.1128/JVI.02702-13 24198409
-
(2013)
J Virol
, vol.88
, pp. 974-981
-
-
Lam, E.1
Stein, S.2
Falck-Pedersen, E.3
-
34
-
-
84890215093
-
The Capsids of HIV-1 and HIV-2 Determine Immune Detection of the Viral cDNA by the Innate Sensor cGAS in Dendritic Cells
-
Lahaye X, Satoh T, Gentili M, Cerboni S, Conrad C, et al. (2013) The Capsids of HIV-1 and HIV-2 Determine Immune Detection of the Viral cDNA by the Innate Sensor cGAS in Dendritic Cells. Immunity: 1–11. doi: 10.1016/j.immuni.2013.07.012 23890059
-
(2013)
Immunity
, pp. 1-11
-
-
Lahaye, X.1
Satoh, T.2
Gentili, M.3
Cerboni, S.4
Conrad, C.5
-
35
-
-
84882896267
-
Cyclic GMP-AMP synthase is an innate immune sensor of HIV and other retroviruses
-
Gao D, Wu J, Wu Y-T, Du F, Aroh C, et al. (2013) Cyclic GMP-AMP synthase is an innate immune sensor of HIV and other retroviruses. Science 341: 903–906. doi: 10.1126/science.1240933 23929945
-
(2013)
Science
, vol.341
, pp. 903-906
-
-
Gao, D.1
Wu, J.2
Wu, Y.-T.3
Du, F.4
Aroh, C.5
-
36
-
-
84905375825
-
Listeria monocytogenes induces IFN expression through an IFI16-, cGAS- and STING-dependent pathway
-
Hansen K, Prabakaran T, Laustsen A, Jorgensen SE, Rahbaek SH, et al. (2014) Listeria monocytogenes induces IFN expression through an IFI16-, cGAS- and STING-dependent pathway. EMBO J.
-
(2014)
EMBO J
-
-
Hansen, K.1
Prabakaran, T.2
Laustsen, A.3
Jorgensen, S.E.4
Rahbaek, S.H.5
-
37
-
-
84907025040
-
The DNA Sensor, Cyclic GMP-AMP Synthase, Is Essential for Induction of IFN- during Chlamydia trachomatis Infection
-
Zhang Y, Yeruva L, Marinov A, Prantner D, Wyrick PB, et al. (2014) The DNA Sensor, Cyclic GMP-AMP Synthase, Is Essential for Induction of IFN- during Chlamydia trachomatis Infection. J Immunol 193: 2394–2404. doi: 10.4049/jimmunol.1302718 25070851
-
(2014)
J Immunol
, vol.193
, pp. 2394-2404
-
-
Zhang, Y.1
Yeruva, L.2
Marinov, A.3
Prantner, D.4
Wyrick, P.B.5
-
38
-
-
79955542915
-
A diverse range of gene products are effectors of the type I interferon antiviral response
-
Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, et al. (2011) A diverse range of gene products are effectors of the type I interferon antiviral response. Nature 472: 481–485. doi: 10.1038/nature09907 21478870
-
(2011)
Nature
, vol.472
, pp. 481-485
-
-
Schoggins, J.W.1
Wilson, S.J.2
Panis, M.3
Murphy, M.Y.4
Jones, C.T.5
-
39
-
-
84905123345
-
OAS proteins and cGAS: unifying concepts in sensing and responding to cytosolic nucleic acids
-
Hornung V, Hartmann R, Ablasser A, Hopfner K-P, (2014) OAS proteins and cGAS: unifying concepts in sensing and responding to cytosolic nucleic acids. Nature Immunol 14: 521–528.
-
(2014)
Nature Immunol
, vol.14
, pp. 521-528
-
-
Hornung, V.1
Hartmann, R.2
Ablasser, A.3
Hopfner, K.-P.4
-
40
-
-
84859754930
-
Coordinated Regulation of Accessory Genetic Elements Produces Cyclic Di-Nucleotides for V. cholerae Virulence
-
Davies BW, Bogard RW, Young TS, Mekalanos JJ, (2012) Coordinated Regulation of Accessory Genetic Elements Produces Cyclic Di-Nucleotides for V. cholerae Virulence. Cell 149: 358–370. doi: 10.1016/j.cell.2012.01.053 22500802
-
(2012)
Cell
, vol.149
, pp. 358-370
-
-
Davies, B.W.1
Bogard, R.W.2
Young, T.S.3
Mekalanos, J.J.4
-
41
-
-
84907597762
-
Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity
-
Kranzusch PJ, Lee ASY, Wilson SC, Solovykh MS, Vance RE, et al. (2014) Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity. Cell: 1–17. doi: 10.1016/j.cell.2014.03.022 24679520
-
(2014)
Cell
, pp. 1-17
-
-
Kranzusch, P.J.1
Lee, A.S.Y.2
Wilson, S.C.3
Solovykh, M.S.4
Vance, R.E.5
-
42
-
-
84905581650
-
Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING
-
Wu X, Wu FH, Wang X, Wang L, Siedow JN, et al. (2014) Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING. Nucleic Acids Res.
-
(2014)
Nucleic Acids Res
-
-
Wu, X.1
Wu, F.H.2
Wang, X.3
Wang, L.4
Siedow, J.N.5
-
43
-
-
80053543434
-
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection
-
George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, et al. (2011) Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection. Genome Res 21: 1686–1694. doi: 10.1101/gr.121327.111 21795384
-
(2011)
Genome Res
, vol.21
, pp. 1686-1694
-
-
George, R.D.1
McVicker, G.2
Diederich, R.3
Ng, S.B.4
MacKenzie, A.P.5
-
44
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586–1591. doi: 10.1093/molbev/msm088 17483113
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
45
-
-
77957233168
-
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
-
Delport W, Poon AFY, Frost SDW, Kosakovsky Pond SL, (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics. 26: 2455–2457. doi: 10.1093/bioinformatics/btq429 20671151
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.W.3
Kosakovsky Pond, S.L.4
-
46
-
-
84929648750
-
Gene-Wide Identification of Episodic Selection
-
Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, et al. (2015) Gene-Wide Identification of Episodic Selection. Mol Biol Evol. doi: 10.1093/molbev/msv035
-
(2015)
Mol Biol Evol
-
-
Murrell, B.1
Weaver, S.2
Smith, M.D.3
Wertheim, J.O.4
Murrell, S.5
-
47
-
-
84929649449
-
Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
-
Smith MD, Wertheim JO, Weaver S, Murrell B, Scheffler K, et al. (2015) Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection. Mol Biol Evol. doi: 10.1093/molbev/msv022
-
(2015)
Mol Biol Evol
-
-
Smith, M.D.1
Wertheim, J.O.2
Weaver, S.3
Murrell, B.4
Scheffler, K.5
-
48
-
-
84885037202
-
Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
-
Kato K, Ishii R, Goto E, Ishitani R, Tokunaga F, et al. (2013) Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS. PLoS ONE 8: e76983. doi: 10.1371/journal.pone.0076983 24116191
-
(2013)
PLoS ONE
, vol.8
, pp. e76983
-
-
Kato, K.1
Ishii, R.2
Goto, E.3
Ishitani, R.4
Tokunaga, F.5
-
49
-
-
84858436409
-
Long-term balancing selection at the antiviral gene OAS1 in Central African chimpanzees
-
Ferguson W, Dvora S, Fikes RW, Stone AC, Boissinot S, (2012) Long-term balancing selection at the antiviral gene OAS1 in Central African chimpanzees. Mol Biol Evol. 29: 1093–1103. doi: 10.1093/molbev/msr247 22104212
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1093-1103
-
-
Ferguson, W.1
Dvora, S.2
Fikes, R.W.3
Stone, A.C.4
Boissinot, S.5
-
50
-
-
84916936154
-
Escape from bacterial iron piracy through rapid evolution of transferrin
-
Barber MF, Elde NC, (2014) Escape from bacterial iron piracy through rapid evolution of transferrin. Science 346: 1362–1366. doi: 10.1126/science.1259329 25504720
-
(2014)
Science
, vol.346
, pp. 1362-1366
-
-
Barber, M.F.1
Elde, N.C.2
-
51
-
-
77951535386
-
A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins
-
Clark NL, Aquadro CF, (2010) A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins. Mol Biol Evol 27: 1152–1161. doi: 10.1093/molbev/msp324 20044587
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1152-1161
-
-
Clark, N.L.1
Aquadro, C.F.2
-
52
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
Pond SLK, Frost SDW, Muse SV, (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics. 21: 676–679. doi: 10.1093/bioinformatics/bti079 15509596
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.K.1
Frost, S.D.W.2
Muse, S.V.3
-
53
-
-
84902829130
-
Antiviral Activity of Human OASL Protein Is Mediated by Enhancing Signaling of the RIG-I RNA Sensor
-
Zhu J, Zhang Y, Ghosh A, Cuevas RA, Forero A, et al. (2014) Antiviral Activity of Human OASL Protein Is Mediated by Enhancing Signaling of the RIG-I RNA Sensor. Immunity 40: 936–948. doi: 10.1016/j.immuni.2014.05.007 24931123
-
(2014)
Immunity
, vol.40
, pp. 936-948
-
-
Zhu, J.1
Zhang, Y.2
Ghosh, A.3
Cuevas, R.A.4
Forero, A.5
-
54
-
-
56349170324
-
The p59 oligoadenylate synthetase-like protein possesses antiviral activity that requires the C-terminal ubiquitin-like domain
-
Marques J, Anwar J, Eskildsen-Larsen S, Rebouillat D, Paludan SR, et al. (2008) The p59 oligoadenylate synthetase-like protein possesses antiviral activity that requires the C-terminal ubiquitin-like domain. J Gen Virol 89: 2767–2772. doi: 10.1099/vir.0.2008/003558-0 18931074
-
(2008)
J Gen Virol
, vol.89
, pp. 2767-2772
-
-
Marques, J.1
Anwar, J.2
Eskildsen-Larsen, S.3
Rebouillat, D.4
Paludan, S.R.5
-
55
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen TW, Graveley BR, (2010) Expansion of the eukaryotic proteome by alternative splicing. Nature 463: 457–463. doi: 10.1038/nature08909 20110989
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
56
-
-
0002027029
-
A New Evolutionary Law
-
vanValen L, (1973) A New Evolutionary Law. Evolutionary Theory 1: 1–30.
-
(1973)
Evolutionary Theory
, vol.1
, pp. 1-30
-
-
vanValen, L.1
-
57
-
-
84911496165
-
The 2'-5' oligoadenylate synthetase 3 (OAS3) enzyme potently synthesizes the 2“-5” oligoadenylates required for RNase L activation
-
Ibsen MS, Gad HH, Thavachelvam K, Boesen T, Despres P, et al. (2014) The 2'-5' oligoadenylate synthetase 3 (OAS3) enzyme potently synthesizes the 2“-5” oligoadenylates required for RNase L activation. J Virol.
-
(2014)
J Virol
-
-
Ibsen, M.S.1
Gad, H.H.2
Thavachelvam, K.3
Boesen, T.4
Despres, P.5
-
58
-
-
0031439892
-
Enzymatic Activity of 2“-5-”Oligoadenylate Synthetase Is Impaired by Specific Mutations that Affect Oligomerization of the Protein
-
Ghosh A, Sarkar SN, Guo W, Bandyopadhyay S, Sen GC, (1997) Enzymatic Activity of 2“-5-”Oligoadenylate Synthetase Is Impaired by Specific Mutations that Affect Oligomerization of the Protein. J Biol Chem 272: 33220–33226. 9407111
-
(1997)
J Biol Chem
, vol.272
, pp. 33220-33226
-
-
Ghosh, A.1
Sarkar, S.N.2
Guo, W.3
Bandyopadhyay, S.4
Sen, G.C.5
-
59
-
-
77956499700
-
Identification of Two APOBEC3F Splice Variants Displaying HIV-1 Antiviral Activity and Contrasting Sensitivity to Vif
-
Lassen KG, Wissing S, Lobritz MA, Santiago M, Greene WC, (2010) Identification of Two APOBEC3F Splice Variants Displaying HIV-1 Antiviral Activity and Contrasting Sensitivity to Vif. J Biol Chem 285: 29326–29335. doi: 10.1074/jbc.M110.154054 20624919
-
(2010)
J Biol Chem
, vol.285
, pp. 29326-29335
-
-
Lassen, K.G.1
Wissing, S.2
Lobritz, M.A.3
Santiago, M.4
Greene, W.C.5
-
60
-
-
58149374613
-
Polymorphisms and Splice Variants Influence the Antiretroviral Activity of Human APOBEC3H
-
Harari A, Ooms M, Mulder LCF, Simon V, (2008) Polymorphisms and Splice Variants Influence the Antiretroviral Activity of Human APOBEC3H. J Virol 83: 295–303. doi: 10.1128/JVI.01665-08 18945781
-
(2008)
J Virol
, vol.83
, pp. 295-303
-
-
Harari, A.1
Ooms, M.2
Mulder, L.C.F.3
Simon, V.4
-
61
-
-
77953769672
-
Ancient Adaptive Evolution of Tetherin Shaped the Functions of Vpu and Nef in Human Immunodeficiency Virus and Primate Lentiviruses
-
Lim ES, Malik HS, Emerman M, (2010) Ancient Adaptive Evolution of Tetherin Shaped the Functions of Vpu and Nef in Human Immunodeficiency Virus and Primate Lentiviruses. J Virol 84: 7124–7134. doi: 10.1128/JVI.00468-10 20444900
-
(2010)
J Virol
, vol.84
, pp. 7124-7134
-
-
Lim, E.S.1
Malik, H.S.2
Emerman, M.3
-
62
-
-
84866925345
-
Identification of Alternatively Translated Tetherin Isoforms with Differing Antiviral and Signaling Activities
-
Cocka LJ, Bates P, (2012) Identification of Alternatively Translated Tetherin Isoforms with Differing Antiviral and Signaling Activities. PLoS Pathog 8: e1002931. doi: 10.1371/journal.ppat.1002931 23028328
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002931
-
-
Cocka, L.J.1
Bates, P.2
-
63
-
-
84894177433
-
A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity
-
Brubaker SW, Gauthier AE, Mills EW, Ingolia NT, Kagan JC, (2014) A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity. Cell 156: 800–811. doi: 10.1016/j.cell.2014.01.021 24529381
-
(2014)
Cell
, vol.156
, pp. 800-811
-
-
Brubaker, S.W.1
Gauthier, A.E.2
Mills, E.W.3
Ingolia, N.T.4
Kagan, J.C.5
-
64
-
-
84896987305
-
Interferon-Stimulated Genes: A Complex Web of Host Defenses
-
Schneider WM, Chevillotte MD, Rice CM, (2014) Interferon-Stimulated Genes: A Complex Web of Host Defenses. Annu Rev Immunol 32: 513–545. doi: 10.1146/annurev-immunol-032713-120231 24555472
-
(2014)
Annu Rev Immunol
, vol.32
, pp. 513-545
-
-
Schneider, W.M.1
Chevillotte, M.D.2
Rice, C.M.3
-
65
-
-
34548142988
-
A scientific journey through the 2-5A/RNase L system
-
Silverman RH, (2007) A scientific journey through the 2-5A/RNase L system. Cytokine Growth F R 18: 381–388. 17681844
-
(2007)
Cytokine Growth F R
, vol.18
, pp. 381-388
-
-
Silverman, R.H.1
-
66
-
-
84901363402
-
Modified Vaccinia Virus Ankara Triggers Type I IFN Production in Murine Conventional Dendritic Cells via a cGAS/STING-Mediated Cytosolic DNA-Sensing Pathway
-
Dai P, Wang W, Cao H, Avogadri F, Dai L, et al. (2014) Modified Vaccinia Virus Ankara Triggers Type I IFN Production in Murine Conventional Dendritic Cells via a cGAS/STING-Mediated Cytosolic DNA-Sensing Pathway. PLoS Pathog 10: e1003989. doi: 10.1371/journal.ppat.1003989 24743339
-
(2014)
PLoS Pathog
, vol.10
, pp. e1003989
-
-
Dai, P.1
Wang, W.2
Cao, H.3
Avogadri, F.4
Dai, L.5
-
67
-
-
84888637695
-
Cell intrinsic immunity spreads to bystander cells via the intercellular transfer of cGAMP
-
Ablasser A, Schmid-Burgk JL, Hemmerling I, Horvath GL, Schmidt T, et al. (2013) Cell intrinsic immunity spreads to bystander cells via the intercellular transfer of cGAMP. Nature: 1–17.
-
(2013)
Nature
, pp. 1-17
-
-
Ablasser, A.1
Schmid-Burgk, J.L.2
Hemmerling, I.3
Horvath, G.L.4
Schmidt, T.5
-
68
-
-
79953755778
-
A Molecular Phylogeny of Living Primates
-
Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, et al. (2011) A Molecular Phylogeny of Living Primates. PLoS Genet 7: e1001342. doi: 10.1371/journal.pgen.1001342 21436896
-
(2011)
PLoS Genet
, vol.7
, pp. e1001342
-
-
Perelman, P.1
Johnson, W.E.2
Roos, C.3
Seuánez, H.N.4
Horvath, J.E.5
-
69
-
-
4444221565
-
UCSF Chimera: A visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, et al. (2004) UCSF Chimera: A visualization system for exploratory research and analysis. J Comput Chem 25: 1605–1612. 15264254
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
|