메뉴 건너뛰기




Volumn 42, Issue 13, 2014, Pages 8243-8257

Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CGAS PROTEIN; CYCLIC GMP; INTERFERON; MEMBRANE PROTEIN; NUCLEOTIDYLTRANSFERASE; STING PROTEIN; UNCLASSIFIED DRUG;

EID: 84905581650     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku569     Document Type: Article
Times cited : (152)

References (83)
  • 1
    • 84873682648 scopus 로고    scopus 로고
    • Sensing the dark side of DNA
    • O'Neill, L.A. O'Neill, L.A. (2013) Sensing the dark side of DNA. Science, 339, 763-764.
    • (2013) Science , vol.339 , pp. 763-764
    • O'neill, L.A.1    O'neill, L.A.2
  • 4
    • 68049092912 scopus 로고    scopus 로고
    • RNA polymerase III detects cytosolic DNA and induces type i interferons through the RIG-I pathway
    • Chiu, Y.H., Macmillan, J.B., and Chen, Z.J. Chiu, Y.H., Macmillan, J.B., and Chen, Z.J. (2009) RNA polymerase III detects cytosolic DNA and induces type I interferons through the RIG-I pathway. Cell, 138, 576-591.
    • (2009) Cell , vol.138 , pp. 576-591
    • Chiu, Y.H.1    Macmillan, J.B.2    Chen, Z.J.3    Chiu, Y.H.4    Macmillan, J.B.5    Chen, Z.J.6
  • 11
    • 53349178089 scopus 로고    scopus 로고
    • STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling
    • Ishikawa, H. and Barber, G.N. Ishikawa, H. and Barber, G.N. (2008) STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling. Nature, 455, 674-678.
    • (2008) Nature , vol.455 , pp. 674-678
    • Ishikawa, H.1    Barber, G.N.2    Ishikawa, H.3    Barber, G.N.4
  • 15
    • 84871218439 scopus 로고    scopus 로고
    • STING and the innate immune response to nucleic acids in the cytosol
    • Burdette, D.L. and Vance, R.E. Burdette, D.L. and Vance, R.E. (2013) STING and the innate immune response to nucleic acids in the cytosol. Nat. Immunol., 14, 19-26.
    • (2013) Nat. Immunol. , vol.14 , pp. 19-26
    • Burdette, D.L.1    Vance, R.E.2    Burdette, D.L.3    Vance, R.E.4
  • 17
    • 84873711885 scopus 로고    scopus 로고
    • Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type i interferon pathway
    • Sun, L., Wu, J., Du, F., Chen, X., and Chen, Z.J. Sun, L., Wu, J., Du, F., Chen, X., and Chen, Z.J. (2013) Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway. Science, 339, 786-791.
    • (2013) Science , vol.339 , pp. 786-791
    • Sun, L.1    Wu, J.2    Du, F.3    Chen, X.4    Chen, Z.J.5    Sun, L.6    Wu, J.7    Du, F.8    Chen, X.9    Chen, Z.J.10
  • 21
  • 36
    • 0034786532 scopus 로고    scopus 로고
    • The HMMTOP transmembrane topology prediction server
    • Tusnady, G.E. and Simon, I. Tusnady, G.E. and Simon, I. (2001) The HMMTOP transmembrane topology prediction server. Bioinformatics, 17, 849-850.
    • (2001) Bioinformatics , vol.17 , pp. 849-850
    • Tusnady, G.E.1    Simon, I.2    Tusnady, G.E.3    Simon, I.4
  • 37
  • 38
    • 84857937262 scopus 로고    scopus 로고
    • STING specifies IRF3 phosphorylation by TBK1 in the cytosolic DNA signaling pathway
    • Tanaka, Y. and Chen, Z.J. Tanaka, Y. and Chen, Z.J. (2012) STING specifies IRF3 phosphorylation by TBK1 in the cytosolic DNA signaling pathway. Sic. Signal., 5, ra20.
    • (2012) Sic. Signal. , vol.5
    • Tanaka, Y.1    Chen, Z.J.2    Tanaka, Y.3    Chen, Z.J.4
  • 39
    • 42449090264 scopus 로고    scopus 로고
    • PROMALS3D: A tool for multiple protein sequence and structure alignments
    • Pei, J., Kim, B.H., and Grishin, N.V. Pei, J., Kim, B.H., and Grishin, N.V. (2008) PROMALS3D: a tool for multiple protein sequence and structure alignments. Nucleic Acids Res., 36, 2295-2300.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2295-2300
    • Pei, J.1    Kim, B.H.2    Grishin, N.V.3    Pei, J.4    Kim, B.H.5    Grishin, N.V.6
  • 44
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1    Edgar, R.C.2
  • 46
    • 77954209892 scopus 로고    scopus 로고
    • The Newick utilities: High-throughput phylogenetic tree processing in the UNIX shell
    • Junier, T. and Zdobnov, E.M. Junier, T. and Zdobnov, E.M. (2010) The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics, 26, 1669-1670.
    • (2010) Bioinformatics , vol.26 , pp. 1669-1670
    • Junier, T.1    Zdobnov, E.M.2    Junier, T.3    Zdobnov, E.M.4
  • 47
    • 77951961553 scopus 로고    scopus 로고
    • Phybase: An R package for species tree analysis
    • Liu, L. and Yu, L. Liu, L. and Yu, L. (2010) Phybase: an R package for species tree analysis. Bioinformatics, 26, 962-963.
    • (2010) Bioinformatics , vol.26 , pp. 962-963
    • Liu, L.1    Yu, L.2    Liu, L.3    Yu, L.4
  • 50
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy
    • Letunic, I. and Bork, P. Letunic, I. and Bork, P. (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res., 39, W475-W478.
    • (2011) Nucleic Acids Res. , vol.39
    • Letunic, I.1    Bork, P.2    Letunic, I.3    Bork, P.4
  • 53
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama, M., Torrents, D., and Bork, P. Suyama, M., Torrents, D., and Bork, P. (2006) PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res., 34, W609-W612.
    • (2006) Nucleic Acids Res. , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3    Suyama, M.4    Torrents, D.5    Bork, P.6
  • 54
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang, Z. and Nielsen, R. Yang, Z. and Nielsen, R. (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol., 17, 32-43.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2    Yang, Z.3    Nielsen, R.4
  • 55
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. Yang, Z. (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci., 13, 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1    Yang, Z.2
  • 56
    • 0347383758 scopus 로고    scopus 로고
    • Modeller: Generation and refinement of homology-based protein structure models
    • Fiser, A. and Sali, A. Fiser, A. and Sali, A. (2003) Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol., 374, 461-491.
    • (2003) Methods Enzymol. , vol.374 , pp. 461-491
    • Fiser, A.1    Sali, A.2
  • 57
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. and Cowtan, K. Emsley, P. and Cowtan, K. (2004) Coot: model-building tools for molecular graphics. Acta Cryst., D60, 2126-2132.
    • (2004) Acta Cryst. , vol.D60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2    Emsley, P.3    Cowtan, K.4
  • 58
    • 0642373709 scopus 로고    scopus 로고
    • Different evolutionary patterns between young duplicate genes in the human genome
    • Zhang, P., Gu, Z., and Li, W.H. Zhang, P., Gu, Z., and Li, W.H. (2003) Different evolutionary patterns between young duplicate genes in the human genome. Genome Biol., 4, R56.
    • (2003) Genome Biol. , vol.4
    • Zhang, P.1    Gu, Z.2    Li, W.H.3
  • 60
    • 0028885552 scopus 로고
    • The mab-21 gene of Caenorhabditis elegans encodes a novel protein required for choice of alternate cell fates
    • Chow, K.L., Hall, D.H., and Emmons, S.W. Chow, K.L., Hall, D.H., and Emmons, S.W. (1995) The mab-21 gene of Caenorhabditis elegans encodes a novel protein required for choice of alternate cell fates. Development, 121, 3615-3626.
    • (1995) Development , vol.121 , pp. 3615-3626
    • Chow, K.L.1    Hall, D.H.2    Emmons, S.W.3    Chow, K.L.4    Hall, D.H.5    Emmons, S.W.6
  • 63
    • 84873142658 scopus 로고    scopus 로고
    • Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase
    • Donovan, J., Dufner, M., and Korennykh, A. Donovan, J., Dufner, M., and Korennykh, A. (2013) Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase. Proc. Natl. Acad. Sci. USA, 110, 1652-1657.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 1652-1657
    • Donovan, J.1    Dufner, M.2    Korennykh, A.3    Donovan, J.4    Dufner, M.5    Korennykh, A.6
  • 65
    • 84859754930 scopus 로고    scopus 로고
    • Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. Cholerae virulence
    • Davies, B.W., Bogard, R.W., Young, T.S., and Mekalanos, J.J. Davies, B.W., Bogard, R.W., Young, T.S., and Mekalanos, J.J. (2012) Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence. Cell, 149, 358-370.
    • (2012) Cell , vol.149 , pp. 358-370
    • Davies, B.W.1    Bogard, R.W.2    Young, T.S.3    Mekalanos, J.J.4    Davies, B.W.5    Bogard, R.W.6    Young, T.S.7    Mekalanos, J.J.8
  • 70
    • 84863726252 scopus 로고    scopus 로고
    • Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system
    • Shu, C., Yi, G., Watts, T., Kao, C.C., and Li, P. Shu, C., Yi, G., Watts, T., Kao, C.C., and Li, P. (2012) Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system. Nat. Struct. Mol. Biol., 19, 722-724.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 722-724
    • Shu, C.1    Yi, G.2    Watts, T.3    Kao, C.C.4    Li, P.5    Shu, C.6    Yi, G.7    Watts, T.8    Kao, C.C.9    Li, P.10
  • 71
    • 84886789626 scopus 로고    scopus 로고
    • Cyclic dinucleotides trigger ULK1 (ATG1) phosphorylation of STING to prevent sustained innate immune signaling
    • Konno, H., Konno, K., and Barber, G.N. Konno, H., Konno, K., and Barber, G.N. (2013) Cyclic dinucleotides trigger ULK1 (ATG1) phosphorylation of STING to prevent sustained innate immune signaling. Cell, 155, 688-698.
    • (2013) Cell , vol.155 , pp. 688-698
    • Konno, H.1    Konno, K.2    Barber, G.N.3    Konno, H.4    Konno, K.5    Barber, G.N.6
  • 73
    • 73349101856 scopus 로고    scopus 로고
    • Dynamic evolution of immune system regulators: The history of the interferon regulatory factor family
    • Nehyba, J., Hrdlickova, R., and Bose, H.R. Nehyba, J., Hrdlickova, R., and Bose, H.R. (2009) Dynamic evolution of immune system regulators: the history of the interferon regulatory factor family. Mol. Biol. Evol., 26, 2539-2550.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2539-2550
    • Nehyba, J.1    Hrdlickova, R.2    Bose, H.R.3    Nehyba, J.4    Hrdlickova, R.5    Bose, H.R.6
  • 74
    • 84873832940 scopus 로고    scopus 로고
    • Evolution of innate and adaptive immune systems in jawless vertebrates
    • Kasamatsu, J. Kasamatsu, J. (2013) Evolution of innate and adaptive immune systems in jawless vertebrates. Microbiol. Immunol., 57, 1-12.
    • (2013) Microbiol. Immunol. , vol.57 , pp. 1-12
    • Kasamatsu, J.1    Kasamatsu, J.2
  • 75
    • 77951794488 scopus 로고    scopus 로고
    • Global characterization of interferon regulatory factor (IRF) genes in vertebrates: Glimpse of the diversification in evolution
    • Huang, B., Qi, Z.T., Xu, Z., and Nie, P. Huang, B., Qi, Z.T., Xu, Z., and Nie, P. (2010) Global characterization of interferon regulatory factor (IRF) genes in vertebrates: glimpse of the diversification in evolution. BMC Immunol., 11, 22.
    • (2010) BMC Immunol. , vol.11 , pp. 22
    • Huang, B.1    Qi, Z.T.2    Xu, Z.3    Nie, P.4    Huang, B.5    Qi, Z.T.6    Xu, Z.7    Nie, P.8
  • 77
    • 84888438883 scopus 로고    scopus 로고
    • Cyclic di-nucleotide signaling enters the eukaryote domain
    • Schaap, P. Schaap, P. (2013) Cyclic di-nucleotide signaling enters the eukaryote domain. IUBMB Life, 65, 897-903.
    • (2013) IUBMB Life , vol.65 , pp. 897-903
    • Schaap, P.1    Schaap, P.2
  • 78
    • 84896958063 scopus 로고    scopus 로고
    • Innate immune sensing and signaling of cytosolic nucleic acids
    • Wu, J. and Chen, Z.J. Wu, J. and Chen, Z.J. (2014) Innate immune sensing and signaling of cytosolic nucleic acids. Annu. Rev. Immunol., 32, 461-488.
    • (2014) Annu. Rev. Immunol. , vol.32 , pp. 461-488
    • Wu, J.1    Chen, Z.J.2    Wu, J.3    Chen, Z.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.