Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence

Cell

Volumn 149, Issue 2, 2012, Pages 358-370

  Davies, Bryan W ^a   Bogard, Ryan W ^a   Young, Travis S ^a   Mekalanos, John J ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CYCLIC AMP; CYCLIC GMP; CYCLIC NUCLEOTIDE; DINUCLEOTIDE CYCLASE; LYASE; PROTEIN TOXT; PROTEIN VC0177; PROTEIN VC0179; REGULATOR PROTEIN; SHORT HAIRPIN RNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR VSPR; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL VIRULENCE; BINDING SITE; CHEMOTAXIS; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DOWN REGULATION; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION; GENE FUNCTION; GENE REPRESSION; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY ISLAND; PHENOTYPE; PRIORITY JOURNAL; PROPHAGE; REGULON; RNA SEQUENCE; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; VIBRIO CHOLERAE;

VIBRIO; VIBRIO CHOLERAE;

EID: 84859754930     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2012.01.053     Document Type: Article

References (50)

1. S. Beyhan, A.D. Tischler, A. Camilli, and F.H. Yildiz Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level J. Bacteriol. 188 2006 3600 3613
2. A. Biegert, C. Mayer, M. Remmert, J. Söding, and A.N. Lupas The MPI Bioinformatics Toolkit for protein sequence analysis Nucleic Acids Res. 34 Web Server issue 2006 W335 W339
3. E.S. Bradley, K. Bodi, A.M. Ismail, and A. Camilli A genome-wide approach to discovery of small RNAs involved in regulation of virulence in Vibrio cholerae PLoS Pathog. 7 2011 e1002126
4. R.G. Brennan, and T.M. Link Hfq structure, function and ligand binding Curr. Opin. Microbiol. 10 2007 125 133
5. D.L. Burdette, K.M. Monroe, K. Sotelo-Troha, J.S. Iwig, B. Eckert, M. Hyodo, Y. Hayakawa, and R.E. Vance STING is a direct innate immune sensor of cyclic di-GMP Nature 478 2011 515 518
6. S.M. Butler, E.J. Nelson, N. Chowdhury, S.M. Faruque, S.B. Calderwood, and A. Camilli Cholera stool bacteria repress chemotaxis to increase infectivity Mol. Microbiol. 60 2006 417 426
7. R.M. Corrigan, J.C. Abbott, H. Burhenne, V. Kaever, and A. Gründling c-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress PLoS Pathog. 7 2011 e1002217
8. B.W. Davies, R.W. Bogard, and J.J. Mekalanos Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation Proc. Natl. Acad. Sci. USA 108 2011 12467 12472
9. S. Dho, K. Stewart, and J.K. Foskett Purinergic receptor activation of Cl- secretion in T84 cells Am. J. Physiol. 262 1992 C67 C74
10. V.J. DiRita, C. Parsot, G. Jander, and J.J. Mekalanos Regulatory cascade controls virulence in Vibrio cholerae Proc. Natl. Acad. Sci. USA 88 1991 5403 5407
11. M. Dziejman, E. Balon, D. Boyd, C.M. Fraser, J.F. Heidelberg, and J.J. Mekalanos Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease Proc. Natl. Acad. Sci. USA 99 2002 1556 1561
12. S.M. Faruque, and J.J. Mekalanos Pathogenicity islands and phages in Vibrio cholerae evolution Trends Microbiol. 11 2003 505 510
13. M. Gomelsky cAMP, c-di-GMP, c-di-AMP and now cGMP: bacteria use them all! Mol. Microbiol. 79 2011 562 565
14. C.J. Grim, J. Choi, J. Chun, Y.S. Jeon, E. Taviani, N.A. Hasan, B. Haley, A. Huq, and R.R. Colwell Occurrence of the Vibrio cholerae seventh pandemic VSP-I island and a new variant OMICS 14 2010 1 7
15. T. Hndstad, M.B. Rye, F. Drabløs, and P. Sætrom A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites PLoS One 6 2011 e18430
16. R. Hartmann, J. Justesen, S.N. Sarkar, G.C. Sen, and V.C. Yee Crystal structure of the 2′-specific and double-stranded RNA-activated interferon-induced antiviral protein 2′-5′-oligoadenylate synthetase Mol. Cell 12 2003 1173 1185
17. F. Hassan, M. Kamruzzaman, J.J. Mekalanos, and S.M. Faruque Satellite phage TLCφ enables toxigenic conversion by CTX phage through dif site alteration Nature 467 2010 982 985
18. J.F. Heidelberg, J.A. Eisen, W.C. Nelson, R.A. Clayton, M.L. Gwinn, R.J. Dodson, D.H. Haft, E.K. Hickey, J.D. Peterson, and L. Umayam DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae Nature 406 2000 477 483
19. L. Holm, and C. Sander DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily Trends Biochem. Sci. 20 1995 345 347
20. J.B. Kaper, J.G. Morris Jr.; and M.M. Levine Cholera Clin. Microbiol. Rev. 8 1995 48 86
21. J.D. Kaunitz, and Y. Akiba Purinergic regulation of duodenal surface pH and ATP concentration: implications for mucosal defence, lipid uptake and cystic fibrosis Acta Physiol. (Oxf.) 201 2011 109 116
22. P.V. Krasteva, J.C. Fong, N.J. Shikuma, S. Beyhan, M.V. Navarro, F.H. Yildiz, and H. Sondermann Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP Science 327 2010 866 868
23. B. Lim, S. Beyhan, and F.H. Yildiz Regulation of Vibrio polysaccharide synthesis and virulence factor production by CdgC, a GGDEF-EAL domain protein, in Vibrio cholerae J. Bacteriol. 189 2007 717 729
24. M.J. Lowden, K. Skorupski, M. Pellegrini, M.G. Chiorazzo, R.K. Taylor, and F.J. Kull Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes Proc. Natl. Acad. Sci. USA 107 2010 2860 2865
25. A. Mandlik, J. Livny, W.P. Robins, J.M. Ritchie, J.J. Mekalanos, and M.K. Waldor RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression Cell Host Microbe 10 2011 165 174
26. D.S. Merrell, S.M. Butler, F. Qadri, N.A. Dolganov, A. Alam, M.B. Cohen, S.B. Calderwood, G.K. Schoolnik, and A. Camilli Host-induced epidemic spread of the cholera bacterium Nature 417 2002 642 645
27. Y. Oppenheimer-Shaanan, E. Wexselblatt, J. Katzhendler, E. Yavin, and S. Ben-Yehuda c-di-AMP reports DNA integrity during sporulation in Bacillus subtilis EMBO Rep. 12 2011 594 601
28. A. Paauw, M.A. Leverstein-van Hall, J. Verhoef, and A.C. Fluit Evolution in quantum leaps: multiple combinatorial transfers of HPI and other genetic modules in Enterobacteriaceae PLoS One 5 2010 e8662
29. R. Pollitzer Cholera 1959 World health Organization Geneva
30. M.H. Rahman, K. Biswas, M.A. Hossain, R.B. Sack, J.J. Mekalanos, and S.M. Faruque Distribution of genes for virulence and ecological fitness among diverse Vibrio cholerae population in a cholera endemic area: tracking the evolution of pathogenic strains DNA Cell Biol. 27 2008 347 355
31. A.L. Richard, J.H. Withey, S. Beyhan, F. Yildiz, and V.J. DiRita The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA Mol. Microbiol. 78 2010 1171 1181
32. J.M. Ritchie, and M.K. Waldor Vibrio cholerae interactions with the gastrointestinal tract: lessons from animal studies Curr. Top. Microbiol. Immunol. 337 2009 37 59
33. U. Römling Great times for small molecules: c-di-AMP, a second messenger candidate in Bacteria and Archaea Sci. Signal. 1 2008 pe39
34. D.A. Ryjenkov, M. Tarutina, O.V. Moskvin, and M. Gomelsky Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain J. Bacteriol. 187 2005 1792 1798
35. S. Schubert, S. Dufke, J. Sorsa, and J. Heesemann A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island Mol. Microbiol. 51 2004 837 848
36. D. Srivastava, R.C. Harris, and C.M. Waters Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae J. Bacteriol. 193 2011 6331 6341
37. A. Stock, J. Mottonen, T. Chen, and J. Stock Identification of a possible nucleotide binding site in CheW, a protein required for sensory transduction in bacterial chemotaxis J. Biol. Chem. 262 1987 535 537
38. E. Taviani, C.J. Grim, J. Choi, J. Chun, B. Haley, N.A. Hasan, A. Huq, and R.R. Colwell Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis FEMS Microbiol. Lett. 308 2010 130 137
39. A.D. Tischler, and A. Camilli Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation Mol. Microbiol. 53 2004 857 869
40. G.G. Weber, and K.E. Klose The complexity of ToxT-dependent transcription in Vibrio cholerae Indian J. Med. Res. 133 2011 201 206
41. J.H. Withey, and V.J. DiRita Activation of both acfA and acfD transcription by Vibrio cholerae ToxT requires binding to two centrally located DNA sites in an inverted repeat conformation Mol. Microbiol. 56 2005 1062 1077
42. J.H. Withey, and V.J. Dirita Vibrio cholerae ToxT independently activates the divergently transcribed aldA and tagA genes J. Bacteriol. 187 2005 7890 7900
43. J.H. Withey, and V.J. DiRita The toxbox: specific DNA sequence requirements for activation of Vibrio cholerae virulence genes by ToxT Mol. Microbiol. 59 2006 1779 1789
44. G. Witte, S. Hartung, K. Büttner, and K.P. Hopfner Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates Mol. Cell 30 2008 167 178
45. J.J. Woodward, A.T. Iavarone, and D.A. Portnoy c-di-AMP secreted by intracellular Listeria monocytogenes activates a host type I interferon response Science 328 2010 1703 1705
46. Q. Xu, M. Dziejman, and J.J. Mekalanos Determination of the transcriptome of Vibrio cholerae during intraintestinal growth and midexponential phase in vitro Proc. Natl. Acad. Sci. USA 100 2003 1286 1291
47. Baselski, V.S.; and Parker, C.D. (1978). Intestinal distribution of Vibrio cholerae in orally infected infant mice: kinetics of recovery of radiolabel and viable cells. Infect. Immun. 21, 518-525.
48. Davies, B.W.; Bogard, R.W.; and Mekalanos, J.J. (2011). Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation. Proc. Natl. Acad. Sci. USA 108, 12467-12472.
49. Livak, K.J.; and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25, 402-408.
50. Oppenheimer-Shaanan, Y.; Wexselblatt, E.; Katzhendler, J.; Yavin, E.; and Ben-Yehuda, S. (2011). c-di-AMP reports DNA integrity during sporulation in Bacillus subtilis. EMBO Rep. 12, 594-601.