Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

Genome Research

Volumn 125, Issue 5, 2015, Pages 714-724

  Baslan, Timour ^a,b,h   Kendall, Jude ^a   Ward, Brian ^c   Cox, Hilary ^a   Leotta, Anthony ^a   Rodgers, Linda ^a   Riggs, Michael ^a   D'Italia, Sean ^a   Sun, Guoli ^a   Yong, Mao ^d   Miskimen, Kristy ^e   Gilmore, Hannah ^e   Saborowski, Michael ^f   Dimitrova, Nevenka ^d   Krasnitz, Alexander ^a   Harris, Lyndsay ^e,g   Wigler, Michael ^a   Hicks, James ^a  

^a Simons Center for Quantitative Biology   (United States)

^b STONY BROOK UNIVERSITY   (United States)

^c Sigma Aldrich Co   (United States)

^d PHILIPS RESEARCH LABORATORIES   (Netherlands)

^e CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f HANNOVER MEDICAL SCHOOL   (Germany)

^g UNIVERSITY HOSPITALS OF CLEVELAND   (United States)

^h MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN D1; GENOMIC DNA; HOMEODOMAIN PROTEIN; DNA;

ALGORITHM; ARTICLE; AUTOSOME; BINDING SITE; CANCER CELL LINE; CANCER GENETICS; CELL CYCLE S PHASE; CHROMOSOME 11; CHROMOSOME 11Q; CHROMOSOME 13; CHROMOSOME 14; CHROMOSOME 17; CHROMOSOME 18; CHROMOSOME 19; CHROMOSOME 1Q; CHROMOSOME 2; CHROMOSOME 20; CHROMOSOME 5; CHROMOSOME 7; CHROMOSOME 8; CHROMOSOME 8Q; CHROMOSOME DELETION; COPY NUMBER VARIATION; DIPLOIDY; DNA CONTENT; FEASIBILITY STUDY; GENE EXPRESSION; GENE LOCUS; GENETIC HETEROGENEITY; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN CELL; HUMAN TISSUE; LYMPHOBLASTOID CELL LINE; MOLECULAR RECOGNITION; MOSAICISM; MULTIDIMENSIONAL SCALING; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROCESS OPTIMIZATION; SENSITIVITY AND SPECIFICITY; SEX CHROMOSOME; DNA SEQUENCE; GENETICS; HUMAN GENOME; MOLECULAR GENETICS; MULTIPLEX POLYMERASE CHAIN REACTION; NUCLEOTIDE SEQUENCE; PROCEDURES; SINGLE CELL ANALYSIS; TUMOR CELL LINE;

ALGORITHMS; BASE SEQUENCE; CELL LINE, TUMOR; DNA COPY NUMBER VARIATIONS; DNA, NEOPLASM; GENOME, HUMAN; HUMANS; MOLECULAR SEQUENCE DATA; MULTIPLEX POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SINGLE-CELL ANALYSIS;

EID: 84929658867     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.188060.114     Document Type: Article

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