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Volumn 10, Issue 7, 2014, Pages

Clonal Architecture of Secondary Acute Myeloid Leukemia Defined by Single-Cell Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

ACUTE GRANULOCYTIC LEUKEMIA; ADULT; AGED; ARTICLE; CELL POPULATION; CLONAL EVOLUTION; CLONAL VARIATION; CONTROLLED STUDY; EVOLUTIONARY ADAPTATION; FEMALE; GENE AMPLIFICATION; GENE MUTATION; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC VARIABILITY; HUMAN; MALE; SINGLE NUCLEOTIDE POLYMORPHISM; CELL CLONE; GENE FREQUENCY; GENETICS; HIGH THROUGHPUT SEQUENCING; MIDDLE AGED; MUTATION; MYELODYSPLASTIC SYNDROME; PATHOLOGY; SINGLE CELL ANALYSIS; TUMOR CELL LINE; TUMOR RECURRENCE;

EID: 84905455426     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004462     Document Type: Article
Times cited : (101)

References (34)
  • 1
    • 84864255882 scopus 로고    scopus 로고
    • The origin and evolution of mutations in acute myeloid leukemia
    • Welch JS, Ley TJ, Link DC, Miller CA, Larson DE, et al. (2012) The origin and evolution of mutations in acute myeloid leukemia. Cell 150: 264-278.
    • (2012) Cell , vol.150 , pp. 264-278
    • Welch, J.S.1    Ley, T.J.2    Link, D.C.3    Miller, C.A.4    Larson, D.E.5
  • 2
    • 84862776906 scopus 로고    scopus 로고
    • Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
    • Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, et al. (2012) Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature 481: 506-510.
    • (2012) Nature , vol.481 , pp. 506-510
    • Ding, L.1    Ley, T.J.2    Larson, D.E.3    Miller, C.A.4    Koboldt, D.C.5
  • 3
    • 77951139631 scopus 로고    scopus 로고
    • Genome remodelling in a basal-like breast cancer metastasis and xenograft
    • Ding L, Ellis MJ, Li S, Larson DE, Chen K, et al. (2010) Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 464: 999-1005.
    • (2010) Nature , vol.464 , pp. 999-1005
    • Ding, L.1    Ellis, M.J.2    Li, S.3    Larson, D.E.4    Chen, K.5
  • 4
    • 78049398107 scopus 로고    scopus 로고
    • Distant metastasis occurs late during the genetic evolution of pancreatic cancer
    • Yachida S, Jones S, Bozic I, Antal T, Leary R, et al. (2010) Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature 467: 1114-1117.
    • (2010) Nature , vol.467 , pp. 1114-1117
    • Yachida, S.1    Jones, S.2    Bozic, I.3    Antal, T.4    Leary, R.5
  • 5
    • 84983720414 scopus 로고    scopus 로고
    • Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data
    • Tao Y, Ruan J, Yeh SH, Lu X, Wang Y, et al. (2011) Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proc Natl Acad Sci U S A 108: 12042-12047.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 12042-12047
    • Tao, Y.1    Ruan, J.2    Yeh, S.H.3    Lu, X.4    Wang, Y.5
  • 6
    • 84863393080 scopus 로고    scopus 로고
    • Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
    • Gerlinger M, Rowan AJ, Horswell S, Larkin J, Endesfelder D, et al. (2012) Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N Engl J Med 366: 883-892.
    • (2012) N Engl J Med , vol.366 , pp. 883-892
    • Gerlinger, M.1    Rowan, A.J.2    Horswell, S.3    Larkin, J.4    Endesfelder, D.5
  • 7
    • 78751644099 scopus 로고    scopus 로고
    • Genetic variegation of clonal architecture and propagating cells in leukaemia
    • Anderson K, Lutz C, van Delft FW, Bateman CM, Guo Y, et al. (2011) Genetic variegation of clonal architecture and propagating cells in leukaemia. Nature 469: 356-361.
    • (2011) Nature , vol.469 , pp. 356-361
    • Anderson, K.1    Lutz, C.2    van Delft, F.W.3    Bateman, C.M.4    Guo, Y.5
  • 8
    • 84865827060 scopus 로고    scopus 로고
    • Clonal evolution of preleukemic hematopoietic stem cells precedes human acute myeloid leukemia
    • Jan M, Snyder TM, Corces-Zimmerman MR, Vyas P, Weissman IL, et al. (2012) Clonal evolution of preleukemic hematopoietic stem cells precedes human acute myeloid leukemia. Sci Transl Med 4: 149ra118.
    • (2012) Sci Transl Med , vol.4
    • Jan, M.1    Snyder, T.M.2    Corces-Zimmerman, M.R.3    Vyas, P.4    Weissman, I.L.5
  • 10
    • 84896081834 scopus 로고    scopus 로고
    • Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia
    • Klco JM, Spencer DH, Miller CA, Griffith M, Lamprecht TL, et al. (2014) Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia. Cancer Cell 25 (3) (): 379-92.
    • (2014) Cancer Cell , vol.25 , Issue.3 , pp. 379-392
    • Klco, J.M.1    Spencer, D.H.2    Miller, C.A.3    Griffith, M.4    Lamprecht, T.L.5
  • 11
    • 79953766940 scopus 로고    scopus 로고
    • Tumour evolution inferred by single-cell sequencing
    • Navin N, Kendall J, Troge J, Andrews P, Rodgers L, et al. (2011) Tumour evolution inferred by single-cell sequencing. Nature 472: 90-94.
    • (2011) Nature , vol.472 , pp. 90-94
    • Navin, N.1    Kendall, J.2    Troge, J.3    Andrews, P.4    Rodgers, L.5
  • 12
    • 84880213158 scopus 로고    scopus 로고
    • Single-cell paired-end genome sequencing reveals structural variation per cell cycle
    • Voet T, Kumar P, Van Loo P, Cooke SL, Marshall J, et al. (2013) Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Res 41: 6119-6138.
    • (2013) Nucleic Acids Res , vol.41 , pp. 6119-6138
    • Voet, T.1    Kumar, P.2    Van Loo, P.3    Cooke, S.L.4    Marshall, J.5
  • 13
    • 84878900540 scopus 로고    scopus 로고
    • Clonal diversity of recurrently mutated genes in myelodysplastic syndromes
    • Walter MJ, Shen D, Shao J, Ding L, White BS, et al. (2013) Clonal diversity of recurrently mutated genes in myelodysplastic syndromes. Leukemia 27: 1275-1282.
    • (2013) Leukemia , vol.27 , pp. 1275-1282
    • Walter, M.J.1    Shen, D.2    Shao, J.3    Ding, L.4    White, B.S.5
  • 14
    • 84863337617 scopus 로고    scopus 로고
    • Clonal architecture of secondary acute myeloid leukemia
    • Walter MJ, Shen D, Ding L, Shao J, Koboldt DC, et al. (2012) Clonal architecture of secondary acute myeloid leukemia. N Engl J Med 366: 1090-1098.
    • (2012) N Engl J Med , vol.366 , pp. 1090-1098
    • Walter, M.J.1    Shen, D.2    Ding, L.3    Shao, J.4    Koboldt, D.C.5
  • 15
    • 84862526929 scopus 로고    scopus 로고
    • The clonal and mutational evolution spectrum of primary triple-negative breast cancers
    • Shah SP, Roth A, Goya R, Oloumi A, Ha G, et al. (2012) The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature 486: 395-399.
    • (2012) Nature , vol.486 , pp. 395-399
    • Shah, S.P.1    Roth, A.2    Goya, R.3    Oloumi, A.4    Ha, G.5
  • 16
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
    • Zong C, Lu S, Chapman AR, Xie XS, (2012) Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338: 1622-1626.
    • (2012) Science , vol.338 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4
  • 18
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, et al. (2012) VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22: 568-576.
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3    Shen, D.4    McLellan, M.D.5
  • 19
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297-1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5
  • 20
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491-498.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • DePristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5
  • 21
    • 84952310964 scopus 로고    scopus 로고
    • SciClone: Inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
    • Miller CA, White BS, Dees ND, Griffith M, Welch JS, et al. (2014) SciClone: Inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution. PLoS Comput Biol (in press).
    • (2014) PLoS Comput Biol
    • Miller, C.A.1    White, B.S.2    Dees, N.D.3    Griffith, M.4    Welch, J.S.5
  • 22
    • 84886299367 scopus 로고    scopus 로고
    • Utility of peripheral blood for cytogenetic and mutation analysis in myelodysplastic syndrome
    • Mohamedali AM, Alkhatabi H, Kulasekararaj A, Shinde S, Mian S, et al. (2013) Utility of peripheral blood for cytogenetic and mutation analysis in myelodysplastic syndrome. Blood 122: 567-570.
    • (2013) Blood , vol.122 , pp. 567-570
    • Mohamedali, A.M.1    Alkhatabi, H.2    Kulasekararaj, A.3    Shinde, S.4    Mian, S.5
  • 23
    • 84878372012 scopus 로고    scopus 로고
    • Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
    • Cancer Genome Atlas Research N
    • Cancer Genome Atlas Research N (2013) Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N Engl J Med 368: 2059-2074.
    • (2013) N Engl J Med , vol.368 , pp. 2059-2074
  • 24
    • 0017167185 scopus 로고
    • The clonal evolution of tumor cell populations
    • Nowell PC, (1976) The clonal evolution of tumor cell populations. Science 194: 23-28.
    • (1976) Science , vol.194 , pp. 23-28
    • Nowell, P.C.1
  • 25
    • 84888219405 scopus 로고    scopus 로고
    • Clinical and biological implications of driver mutations in myelodysplastic syndromes
    • Papaemmanuil E, Gerstung M, Malcovati L, Tauro S, Gundem G, et al. (2013) Clinical and biological implications of driver mutations in myelodysplastic syndromes. Blood 122: 3616-3627 quiz 3699.
    • (2013) Blood , vol.122 , pp. 3616-3627
    • Papaemmanuil, E.1    Gerstung, M.2    Malcovati, L.3    Tauro, S.4    Gundem, G.5
  • 26
    • 84874102335 scopus 로고    scopus 로고
    • Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
    • Landau DA, Carter SL, Stojanov P, McKenna A, Stevenson K, et al. (2013) Evolution and impact of subclonal mutations in chronic lymphocytic leukemia. Cell 152: 714-726.
    • (2013) Cell , vol.152 , pp. 714-726
    • Landau, D.A.1    Carter, S.L.2    Stojanov, P.3    McKenna, A.4    Stevenson, K.5
  • 27
    • 84863229772 scopus 로고    scopus 로고
    • Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm
    • Hou Y, Song L, Zhu P, Zhang B, Tao Y, et al. (2012) Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 148: 873-885.
    • (2012) Cell , vol.148 , pp. 873-885
    • Hou, Y.1    Song, L.2    Zhu, P.3    Zhang, B.4    Tao, Y.5
  • 28
    • 84863230091 scopus 로고    scopus 로고
    • Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor
    • Xu X, Hou Y, Yin X, Bao L, Tang A, et al. (2012) Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell 148: 886-895.
    • (2012) Cell , vol.148 , pp. 886-895
    • Xu, X.1    Hou, Y.2    Yin, X.3    Bao, L.4    Tang, A.5
  • 29
    • 84877108149 scopus 로고    scopus 로고
    • Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation
    • Hiatt JB, Pritchard CC, Salipante SJ, O'Roak BJ, Shendure J, (2013) Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation. Genome Res 23: 843-854.
    • (2013) Genome Res , vol.23 , pp. 843-854
    • Hiatt, J.B.1    Pritchard, C.C.2    Salipante, S.J.3    O'Roak, B.J.4    Shendure, J.5
  • 31
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 32
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • Paradis E, Claude J, Strimmer K, (2004) APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 33
    • 79951548848 scopus 로고    scopus 로고
    • phangorn: phylogenetic analysis in R
    • Schliep KP, (2011) phangorn: phylogenetic analysis in R. Bioinformatics 27: 592-593.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1
  • 34
    • 0001464973 scopus 로고
    • Estimation of evolutionary distances between homologous nucleotide sequences
    • Kimura M, (1981) Estimation of evolutionary distances between homologous nucleotide sequences. Proc Natl Acad Sci U S A 78: 454-458.
    • (1981) Proc Natl Acad Sci U S A , vol.78 , pp. 454-458
    • Kimura, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.