메뉴 건너뛰기




Volumn 110, Issue 52, 2013, Pages 21083-21088

Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients

Author keywords

Cancer diagnostics; Personalized therapy

Indexed keywords

ARTICLE; CANCER PATIENT; CIRCULATING TUMOR CELL; CLINICAL ARTICLE; CONTROLLED STUDY; COPY NUMBER VARIATION; GENE MUTATION; HUMAN; HUMAN CELL; LUNG CANCER; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84891354380     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1320659110     Document Type: Article
Times cited : (377)

References (42)
  • 1
    • 84875490185 scopus 로고    scopus 로고
    • Cancer genome landscapes
    • Vogelstein B, et al. (2013) Cancer genome landscapes. Science 339(6127): 1546-1558.
    • (2013) Science , vol.339 , Issue.6127 , pp. 1546-1558
    • Vogelstein, B.1
  • 2
    • 80053157914 scopus 로고    scopus 로고
    • Unravelling the complexity of metastasis - Molecular understanding and targeted therapies
    • Sethi N, Kang Y (2011) Unravelling the complexity of metastasis - molecular understanding and targeted therapies. Nat Rev Cancer 11(10): 735-748.
    • (2011) Nat Rev Cancer , vol.11 , Issue.10 , pp. 735-748
    • Sethi, N.1    Kang, Y.2
  • 3
    • 77953006634 scopus 로고    scopus 로고
    • The mutation spectrum revealed by paired genome sequences from a lung cancer patient
    • Lee W, et al. (2010) The mutation spectrum revealed by paired genome sequences from a lung cancer patient. Nature 465(7297): 473-477.
    • (2010) Nature , vol.465 , Issue.7297 , pp. 473-477
    • Lee, W.1
  • 4
    • 0028241030 scopus 로고
    • Point mutations of the N-ras gene in the blood plasma DNA of patients with myelodysplastic syndrome or acute myelogenous leukaemia
    • Vasioukhin V, et al. (1994) Point mutations of the N-ras gene in the blood plasma DNA of patients with myelodysplastic syndrome or acute myelogenous leukaemia. Br J Haematol 86(4): 774-779.
    • (1994) Br J Haematol , vol.86 , Issue.4 , pp. 774-779
    • Vasioukhin, V.1
  • 5
    • 66849091226 scopus 로고    scopus 로고
    • Epidermal growth factor receptor mutations in plasma DNA samples predict tumor response in Chinese patients with stages IIIB to IV non-smallcell lung cancer
    • Bai H, et al. (2009) Epidermal growth factor receptor mutations in plasma DNA samples predict tumor response in Chinese patients with stages IIIB to IV non-smallcell lung cancer. J Clin Oncol 27(16): 2653-2659.
    • (2009) J Clin Oncol , vol.27 , Issue.16 , pp. 2653-2659
    • Bai, H.1
  • 6
    • 84861746437 scopus 로고    scopus 로고
    • Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA
    • Forshew T, et al. (2012) Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA. Sci Transl Med 4(136):136ra68.
    • (2012) Sci Transl Med , vol.4 , Issue.136
    • Forshew, T.1
  • 7
    • 84875520648 scopus 로고    scopus 로고
    • Analysis of circulating tumor DNA to monitor metastatic breast cancer
    • Dawson SJ, et al. (2013) Analysis of circulating tumor DNA to monitor metastatic breast cancer. N Engl J Med 368(13): 1199-1209.
    • (2013) N Engl J Med , vol.368 , Issue.13 , pp. 1199-1209
    • Dawson, S.J.1
  • 8
    • 84870312106 scopus 로고    scopus 로고
    • Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing
    • Leary RJ, et al. (2012) Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci Transl Med 4(162):162ra154.
    • (2012) Sci Transl Med , vol.4 , Issue.162
    • Leary, R.J.1
  • 9
    • 84877579861 scopus 로고    scopus 로고
    • Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
    • Murtaza M, et al. (2013) Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497(7447): 108-112.
    • (2013) Nature , vol.497 , Issue.7447 , pp. 108-112
    • Murtaza, M.1
  • 10
    • 47949114668 scopus 로고    scopus 로고
    • Detection of mutations in EGFR in circulating lung-cancer cells
    • Maheswaran S, et al. (2008) Detection of mutations in EGFR in circulating lung-cancer cells. N Engl J Med 359(4): 366-377.
    • (2008) N Engl J Med , vol.359 , Issue.4 , pp. 366-377
    • Maheswaran, S.1
  • 11
    • 4143094988 scopus 로고    scopus 로고
    • Circulating tumor cells, disease progression, and survival in metastatic breast cancer
    • Cristofanilli M, et al. (2004) Circulating tumor cells, disease progression, and survival in metastatic breast cancer. N Engl J Med 351(8): 781-791.
    • (2004) N Engl J Med , vol.351 , Issue.8 , pp. 781-791
    • Cristofanilli, M.1
  • 12
    • 79955045007 scopus 로고    scopus 로고
    • Evaluation and prognostic significance of circulating tumor cells in patients with non-small-cell lung cancer
    • Krebs MG, et al. (2011) Evaluation and prognostic significance of circulating tumor cells in patients with non-small-cell lung cancer. J Clin Oncol 29(12): 1556-1563.
    • (2011) J Clin Oncol , vol.29 , Issue.12 , pp. 1556-1563
    • Krebs, M.G.1
  • 13
    • 84862782971 scopus 로고    scopus 로고
    • Isolation and genomic analysis of circulating tumor cells from castration resistant metastatic prostate cancer
    • Magbanua MJ, et al. (2012) Isolation and genomic analysis of circulating tumor cells from castration resistant metastatic prostate cancer. BMC Cancer 12:78.
    • (2012) BMC Cancer , vol.12 , pp. 78
    • Magbanua, M.J.1
  • 14
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
    • Zong C, Lu S, Chapman AR, Xie XS (2012) Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338(6114): 1622-1626.
    • (2012) Science , vol.338 , Issue.6114 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4
  • 15
    • 79953766940 scopus 로고    scopus 로고
    • Tumour evolution inferred by single-cell sequencing
    • Navin N, et al. (2011) Tumour evolution inferred by single-cell sequencing. Nature 472(7341): 90-94.
    • (2011) Nature , vol.472 , Issue.7341 , pp. 90-94
    • Navin, N.1
  • 16
    • 84863230091 scopus 로고    scopus 로고
    • Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor
    • Xu X, et al. (2012) Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell 148(5): 886-895.
    • (2012) Cell , vol.148 , Issue.5 , pp. 886-895
    • Xu, X.1
  • 17
    • 84863393080 scopus 로고    scopus 로고
    • Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
    • Gerlinger M, et al. (2012) Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N Engl J Med 366(10): 883-892.
    • (2012) N Engl J Med , vol.366 , Issue.10 , pp. 883-892
    • Gerlinger, M.1
  • 18
    • 78651330430 scopus 로고    scopus 로고
    • COSMIC: Mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
    • Forbes SA, et al. (2011) COSMIC: Mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res 39(Database issue): D945-D950.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISSUE
    • Forbes, S.A.1
  • 19
    • 2342471392 scopus 로고    scopus 로고
    • Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib
    • Lynch TJ, et al. (2004) Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med 350(21): 2129-2139.
    • (2004) N Engl J Med , vol.350 , Issue.21 , pp. 2129-2139
    • Lynch, T.J.1
  • 20
    • 79953118839 scopus 로고    scopus 로고
    • Genotypic and histological evolution of lung cancers acquiring resistance to EGFR inhibitors
    • Sequist LV, et al. (2011) Genotypic and histological evolution of lung cancers acquiring resistance to EGFR inhibitors. Sci Transl Med 3(75):75ra26.
    • (2011) Sci Transl Med , vol.3 , Issue.75
    • Sequist, L.V.1
  • 21
    • 84866851740 scopus 로고    scopus 로고
    • Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer
    • Peifer M, et al. (2012) Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer. Nat Genet 44(10): 1104-1110.
    • (2012) Nat Genet , vol.44 , Issue.10 , pp. 1104-1110
    • Peifer, M.1
  • 22
    • 79958761641 scopus 로고    scopus 로고
    • Cell of origin of small cell lung cancer: Inactivation of Trp53 and Rb1 in distinct cell types of adult mouse lung
    • Sutherland KD, et al. (2011) Cell of origin of small cell lung cancer: Inactivation of Trp53 and Rb1 in distinct cell types of adult mouse lung. Cancer Cell 19(6): 754-764.
    • (2011) Cancer Cell , vol.19 , Issue.6 , pp. 754-764
    • Sutherland, K.D.1
  • 23
    • 4444291843 scopus 로고    scopus 로고
    • Detection of large-scale variation in the human genome
    • Iafrate AJ, et al. (2004) Detection of large-scale variation in the human genome. Nat Genet 36(9): 949-951.
    • (2004) Nat Genet , vol.36 , Issue.9 , pp. 949-951
    • Iafrate, A.J.1
  • 24
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • Sebat J, et al. (2004) Large-scale copy number polymorphism in the human genome. Science 305(5683): 525-528.
    • (2004) Science , vol.305 , Issue.5683 , pp. 525-528
    • Sebat, J.1
  • 25
    • 36248980204 scopus 로고    scopus 로고
    • Characterizing the cancer genome in lung adenocarcinoma
    • Weir BA, et al. (2007) Characterizing the cancer genome in lung adenocarcinoma. Nature 450(7171): 893-898.
    • (2007) Nature , vol.450 , Issue.7171 , pp. 893-898
    • Weir, B.A.1
  • 26
    • 84873314664 scopus 로고    scopus 로고
    • Gene copy-number alterations: A cost-benefit analysis
    • Tang YC, Amon A (2013) Gene copy-number alterations: A cost-benefit analysis. Cell 152(3): 394-405.
    • (2013) Cell , vol.152 , Issue.3 , pp. 394-405
    • Tang, Y.C.1    Amon, A.2
  • 27
    • 1542515338 scopus 로고    scopus 로고
    • A census of human cancer genes
    • Futreal PA, et al. (2004) A census of human cancer genes. Nat Rev Cancer 4(3): 177-183.
    • (2004) Nat Rev Cancer , vol.4 , Issue.3 , pp. 177-183
    • Futreal, P.A.1
  • 29
    • 84864494098 scopus 로고    scopus 로고
    • GeneCodis3: A nonredundant and modular enrichment analysis tool for functional genomics
    • Tabas-Madrid D, Nogales-Cadenas R, Pascual-Montano A (2012) GeneCodis3: A nonredundant and modular enrichment analysis tool for functional genomics. Nucleic Acids Res 40(Web Server issue):W478-W483.
    • (2012) Nucleic Acids Res , vol.40 , Issue.WEB SERVER ISSUE
    • Tabas-Madrid, D.1    Nogales-Cadenas, R.2    Pascual-Montano, A.3
  • 30
    • 84856536814 scopus 로고    scopus 로고
    • Primary colorectal cancers and their subsequent hepatic metastases are genetically different: Implications for selection of patients for targeted treatment
    • Vermaat JS, et al. (2012) Primary colorectal cancers and their subsequent hepatic metastases are genetically different: Implications for selection of patients for targeted treatment. Clin Cancer Res 18(3): 688-699.
    • (2012) Clin Cancer Res , vol.18 , Issue.3 , pp. 688-699
    • Vermaat, J.S.1
  • 31
    • 84877816994 scopus 로고    scopus 로고
    • Tumor cell dissemination: Emerging biological insights from animal models and cancer patients
    • Kang Y, Pantel K (2013) Tumor cell dissemination: Emerging biological insights from animal models and cancer patients. Cancer Cell 23(5): 573-581.
    • (2013) Cancer Cell , vol.23 , Issue.5 , pp. 573-581
    • Kang, Y.1    Pantel, K.2
  • 32
    • 84872048462 scopus 로고    scopus 로고
    • Heterogeneity of epidermal growth factor receptor status and mutations of KRAS/PIK3CA in circulating tumor cells of patients with colorectal cancer
    • Gasch C, et al. (2013) Heterogeneity of epidermal growth factor receptor status and mutations of KRAS/PIK3CA in circulating tumor cells of patients with colorectal cancer. Clin Chem 59(1): 252-260.
    • (2013) Clin Chem , vol.59 , Issue.1 , pp. 252-260
    • Gasch, C.1
  • 33
    • 0036831613 scopus 로고    scopus 로고
    • New aspects of natural-killer-cell surveillance and therapy of cancer
    • Smyth MJ, Hayakawa Y, Takeda K, Yagita H (2002) New aspects of natural-killer-cell surveillance and therapy of cancer. Nat Rev Cancer 2(11): 850-861.
    • (2002) Nat Rev Cancer , vol.2 , Issue.11 , pp. 850-861
    • Smyth, M.J.1    Hayakawa, Y.2    Takeda, K.3    Yagita, H.4
  • 34
    • 84860595791 scopus 로고    scopus 로고
    • Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
    • Rohland N, Reich D (2012) Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Res 22(5): 939-946.
    • (2012) Genome Res , vol.22 , Issue.5 , pp. 939-946
    • Rohland, N.1    Reich, D.2
  • 35
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14): 1754-1760.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 36
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li H, et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25(16): 2078-2079.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1
  • 37
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, et al. (2010) The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20(9): 1297-1303.
    • (2010) Genome Res , vol.20 , Issue.9 , pp. 1297-1303
    • McKenna, A.1
  • 38
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
    • Cingolani P, et al. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 6(2): 80-92.
    • (2012) Fly (Austin) , vol.6 , Issue.2 , pp. 80-92
    • Cingolani, P.1
  • 39
    • 38049100456 scopus 로고    scopus 로고
    • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    • Beroukhim R, et al. (2007) Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma. Proc Natl Acad Sci USA 104(50): 20007-20012.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.50 , pp. 20007-20012
    • Beroukhim, R.1
  • 40
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey JD (2002) A direct approach to false discovery rates. J R Stat Soc B 64(3): 479-498.
    • (2002) J R Stat Soc B , vol.64 , Issue.3 , pp. 479-498
    • Storey, J.D.1
  • 41
    • 84944178665 scopus 로고
    • Hierarchical grouping to optimize an objective function
    • Ward JH (1963) Hierarchical grouping to optimize an objective function. J Am Stat Assoc 58(301): 236-244.
    • (1963) J Am Stat Assoc , vol.58 , Issue.301 , pp. 236-244
    • Ward, J.H.1
  • 42
    • 0001179368 scopus 로고
    • Similarity analysis by reciprocal pairs for discrete and continuous data
    • McQuitty LL (1966) Similarity analysis by reciprocal pairs for discrete and continuous data. Educ Psychol Meas 26: 825-831.
    • (1966) Educ Psychol Meas , vol.26 , pp. 825-831
    • McQuitty, L.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.